NB-ARC domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 7 - 164 | 1.7e-26 | TIR domain |
| TIR_2 | PF13676 | 7 - 113 | 1.1e-08 | TIR domain |
| NB-ARC | PF00931 | 192 - 335 | 4.1e-13 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 402 - 472 | 1.5e-13 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 581 - 600 | 1.1e-08 | Leucine Rich Repeat |
| LRR_14 | PF23598 | 869 - 967 | 2.4e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 896 - 1072 | 1e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 993 - 1061 | 5.4e-06 | Leucine-rich repeat region |
| WHD_ROQ1 | PF23282 | 1311 - 1378 | 9.8e-06 | Disease resistance protein Roq1-like, winged-helix domain |
| TIR | PF01582 | 1402 - 1564 | 1.6e-42 | TIR domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2988, 4340 |
| Acc16I | TGCGCA | 2 cut(s) | 818, 3186 |
| Acc36I | ACCTGC | 1 cut(s) | 4047 |
| AccB1I | GGYRCC | 3 cut(s) | 2002, 2498, 3076 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1307, 4790 |
| AccBSI | CCGCTC | 2 cut(s) | 4320, 4768 |
| AccII | CGCG | 2 cut(s) | 1568, 2504 |
| AccIII | TCCGGA | 1 cut(s) | 3217 |
| AclI | AACGTT | 1 cut(s) | 1854 |
| AclWI | GGATC | 8 cut(s) | 1625, 1638, 1829, 1971, 2748, 3057, 3427, 4303 |
| AcoI | YGGCCR | 1 cut(s) | 5137 |
| AcsI | RAATTY | 9 cut(s) | 208, 310, 792, 851, 1040, 2615, 4114, 4284, 4704 |
| AcuI | CTGAAG | 7 cut(s) | 1118, 2015, 2565, 2567, 2789, 3033, 3893 |
| AcyI | GRCGYC | 1 cut(s) | 102 |
| AdeI | CACNNNGTG | 2 cut(s) | 830, 1202 |
| AfaI | GTAC | 4 cut(s) | 909, 1008, 3460, 4015 |
| AflII | CTTAAG | 1 cut(s) | 1775 |
| AflIII | ACRYGT | 4 cut(s) | 418, 1697, 3246, 3642 |
| AjiI | CACGTC | 1 cut(s) | 475 |
| AjnI | CCWGG | 6 cut(s) | 556, 868, 1023, 1648, 3415, 3607 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 317, 349 |
| AleI | CACNNNNGTG | 2 cut(s) | 3074, 5052 |
| Alw21I | GWGCWC | 1 cut(s) | 5203 |
| Alw26I | GTCTC | 7 cut(s) | 109, 972, 2208, 2373, 2528, 2985, 4736 |
| AlwI | GGATC | 8 cut(s) | 1625, 1638, 1829, 1971, 2748, 3057, 3427, 4303 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2590, 3369, 4855 |
| Aor13HI | TCCGGA | 1 cut(s) | 3217 |
| AoxI | GGCC | 5 cut(s) | 274, 1390, 3265, 3565, 5137 |
| ApoI | RAATTY | 9 cut(s) | 208, 310, 792, 851, 1040, 2615, 4114, 4284, 4704 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1151, 1183, 1319, 1351, 4555, 4587 |
| AseI | ATTAAT | 3 cut(s) | 1617, 3209, 3807 |
| AspA2I | CCTAGG | 1 cut(s) | 3236 |
| AspLEI | GCGC | 2 cut(s) | 819, 3187 |
| AspS9I | GGNCC | 3 cut(s) | 274, 866, 1654 |
| AsuC2I | CCSGG | 2 cut(s) | 3740, 5162 |
| AsuHPI | GGTGA | 6 cut(s) | 205, 2123, 3372, 3989, 4176, 4313 |
| AsuNHI | GCTAGC | 2 cut(s) | 3994, 4148 |
| AvaII | GGWCC | 2 cut(s) | 866, 1654 |
| AvrII | CCTAGG | 1 cut(s) | 3236 |
| BamHI | GGATCC | 1 cut(s) | 1630 |
| BanI | GGYRCC | 3 cut(s) | 2002, 2498, 3076 |
| BanII | GRGCYC | 3 cut(s) | 3607, 4184, 5203 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 521, 553, 4259, 4291 |
| BauI | CACGAG | 3 cut(s) | 962, 1302, 3464 |
| BbsI | GAAGAC | 6 cut(s) | 129, 681, 3691, 4050, 4547, 4962 |
| Bbv12I | GWGCWC | 1 cut(s) | 5203 |
| BceAI | ACGGC | 2 cut(s) | 71, 2402 |
| BciT130I | CCWGG | 6 cut(s) | 558, 870, 1025, 1650, 3417, 3609 |
| BciVI | GTATCC | 2 cut(s) | 40, 363 |
| BclI | TGATCA | 2 cut(s) | 1408, 4326 |
| BcnI | CCSGG | 2 cut(s) | 3740, 5162 |
| BcoDI | GTCTC | 7 cut(s) | 109, 972, 2208, 2373, 2528, 2985, 4736 |
| BfmI | CTRYAG | 5 cut(s) | 81, 168, 971, 1765, 2910 |
| BfrI | CTTAAG | 1 cut(s) | 1775 |
| BfuAI | ACCTGC | 1 cut(s) | 4047 |
| BfuI | GTATCC | 2 cut(s) | 40, 363 |
| BglII | AGATCT | 2 cut(s) | 2050, 2764 |
| BlnI | CCTAGG | 1 cut(s) | 3236 |
| BlpI | GCTNAGC | 1 cut(s) | 1829 |
| BmcAI | AGTACT | 2 cut(s) | 909, 4015 |
| Bme1390I | CCNGG | 8 cut(s) | 558, 870, 1025, 1650, 3417, 3609, 3740, 5162 |
| Bme18I | GGWCC | 2 cut(s) | 866, 1654 |
| BmgBI | CACGTC | 1 cut(s) | 475 |
| BmgT120I | GGNCC | 3 cut(s) | 274, 866, 1654 |
| BmiI | GGNNCC | 9 cut(s) | 288, 1632, 1655, 1656, 1795, 2004, 2500, 3078, 3606 |
| BmrFI | CCNGG | 8 cut(s) | 558, 870, 1025, 1650, 3417, 3609, 3740, 5162 |
| BmrI | ACTGGG | 1 cut(s) | 836 |
| BmtI | GCTAGC | 2 cut(s) | 3998, 4152 |
| BmuI | ACTGGG | 1 cut(s) | 836 |
| BoxI | GACNNNNGTC | 2 cut(s) | 477, 1935 |
| BpiI | GAAGAC | 6 cut(s) | 129, 681, 3691, 4050, 4547, 4962 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2525, 2557 |
| BpmI | CTGGAG | 5 cut(s) | 502, 967, 1046, 3591, 5217 |
| Bpu10I | CCTNAGC | 3 cut(s) | 577, 1674, 4313 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1829 |
| BpuMI | CCSGG | 2 cut(s) | 3740, 5162 |
| BsaAI | YACGTR | 1 cut(s) | 421 |
| BsaBI | GATNNNNATC | 2 cut(s) | 4418, 4794 |
| BsaHI | GRCGYC | 1 cut(s) | 102 |
| BsaI | GGTCTC | 1 cut(s) | 4736 |
| BsaJI | CCNNGG | 5 cut(s) | 1649, 2502, 3236, 4222, 4736 |
| BsaWI | WCCGGW | 1 cut(s) | 3217 |
| Bse118I | RCCGGY | 3 cut(s) | 1283, 2495, 3307 |
| Bse1I | ACTGG | 7 cut(s) | 117, 290, 831, 863, 1697, 2044, 3080 |
| Bse3DI | GCAATG | 4 cut(s) | 328, 3595, 4353, 4596 |
| Bse8I | GATNNNNATC | 2 cut(s) | 4418, 4794 |
| BseAI | TCCGGA | 1 cut(s) | 3217 |
| BseBI | CCWGG | 6 cut(s) | 558, 870, 1025, 1650, 3417, 3609 |
| BseDI | CCNNGG | 5 cut(s) | 1649, 2502, 3236, 4222, 4736 |
| BseGI | GGATG | 9 cut(s) | 233, 567, 1434, 1453, 1910, 3033, 3670, 4636, 5096 |
| BseJI | GATNNNNATC | 2 cut(s) | 4418, 4794 |
| BseMI | GCAATG | 4 cut(s) | 328, 3595, 4353, 4596 |
| BseNI | ACTGG | 7 cut(s) | 117, 290, 831, 863, 1697, 2044, 3080 |
| BseRI | GAGGAG | 4 cut(s) | 167, 426, 4092, 4378 |
| BseYI | CCCAGC | 2 cut(s) | 3600, 4431 |
| BsgI | GTGCAG | 2 cut(s) | 1694, 5151 |
| Bsh1236I | CGCG | 2 cut(s) | 1568, 2504 |
| BshFI | GGCC | 5 cut(s) | 276, 1392, 3267, 3567, 5139 |
| BshNI | GGYRCC | 3 cut(s) | 2002, 2498, 3076 |
| BsiHKAI | GWGCWC | 1 cut(s) | 5203 |
| BsiSI | CCGG | 7 cut(s) | 1284, 2496, 3218, 3308, 3740, 5140, 5162 |
| BslFI | GGGAC | 3 cut(s) | 407, 1667, 3354 |
| BsmAI | GTCTC | 7 cut(s) | 109, 972, 2208, 2373, 2528, 2985, 4736 |
| BsmBI | CGTCTC | 1 cut(s) | 109 |
| BsmFI | GGGAC | 3 cut(s) | 407, 1667, 3354 |
| BsmI | GAATGC | 4 cut(s) | 762, 3187, 3307, 3326 |
| BsnI | GGCC | 5 cut(s) | 276, 1392, 3267, 3567, 5139 |
| Bso31I | GGTCTC | 1 cut(s) | 4736 |
| Bsp1286I | GDGCHC | 3 cut(s) | 3607, 4184, 5203 |
| Bsp13I | TCCGGA | 1 cut(s) | 3217 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1829 |
| Bsp19I | CCATGG | 2 cut(s) | 4222, 4736 |
| BspANI | GGCC | 5 cut(s) | 276, 1392, 3267, 3567, 5139 |
| BspEI | TCCGGA | 1 cut(s) | 3217 |
| BspFNI | CGCG | 2 cut(s) | 1568, 2504 |
| BspHI | TCATGA | 3 cut(s) | 3511, 4422, 4798 |
| BspLI | GGNNCC | 9 cut(s) | 288, 1632, 1655, 1656, 1795, 2004, 2500, 3078, 3606 |
| BspMAI | CTGCAG | 3 cut(s) | 85, 975, 1769 |
| BspMI | ACCTGC | 1 cut(s) | 4047 |
| BspOI | GCTAGC | 2 cut(s) | 3998, 4152 |
| BspPI | GGATC | 8 cut(s) | 1625, 1638, 1829, 1971, 2748, 3057, 3427, 4303 |
| BspQI | GCTCTTC | 1 cut(s) | 2122 |
| BspT107I | GGYRCC | 3 cut(s) | 2002, 2498, 3076 |
| BspTI | CTTAAG | 1 cut(s) | 1775 |
| BspTNI | GGTCTC | 1 cut(s) | 4736 |
| BsrBI | CCGCTC | 2 cut(s) | 4320, 4768 |
| BsrDI | GCAATG | 4 cut(s) | 328, 3595, 4353, 4596 |
| BsrFI | RCCGGY | 3 cut(s) | 1283, 2495, 3307 |
| BsrI | ACTGG | 7 cut(s) | 117, 290, 831, 863, 1697, 2044, 3080 |
| BssAI | RCCGGY | 3 cut(s) | 1283, 2495, 3307 |
| BssECI | CCNNGG | 5 cut(s) | 1649, 2502, 3236, 4222, 4736 |
| BssNAI | GTATAC | 3 cut(s) | 4276, 5015, 5029 |
| BssNI | GRCGYC | 1 cut(s) | 102 |
| BssSI | CACGAG | 3 cut(s) | 962, 1302, 3464 |
| BssT1I | CCWWGG | 3 cut(s) | 3236, 4222, 4736 |
| Bst1107I | GTATAC | 3 cut(s) | 4276, 5015, 5029 |
| Bst2BI | CACGAG | 3 cut(s) | 962, 1302, 3464 |
| Bst2UI | CCWGG | 6 cut(s) | 558, 870, 1025, 1650, 3417, 3609 |
| Bst6I | CTCTTC | 6 cut(s) | 1118, 2122, 3009, 4431, 4956, 5055 |
| BstACI | GRCGYC | 1 cut(s) | 102 |
| BstAFI | CTTAAG | 1 cut(s) | 1775 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 3757, 4598, 4631 |
| BstBAI | YACGTR | 1 cut(s) | 421 |
| BstDSI | CCRYGG | 3 cut(s) | 2502, 4222, 4736 |
| BstF5I | GGATG | 9 cut(s) | 233, 567, 1434, 1453, 1910, 3033, 3670, 4636, 5096 |
| BstFNI | CGCG | 2 cut(s) | 1568, 2504 |
| BstHHI | GCGC | 2 cut(s) | 819, 3187 |
| BstMAI | GTCTC | 7 cut(s) | 109, 972, 2208, 2373, 2528, 2985, 4736 |
| BstNI | CCWGG | 6 cut(s) | 558, 870, 1025, 1650, 3417, 3609 |
| BstNSI | RCATGY | 4 cut(s) | 1701, 3646, 3764, 3966 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 477, 1935 |
| BstSCI | CCNGG | 8 cut(s) | 556, 868, 1023, 1648, 3415, 3607, 3738, 5160 |
| BstSFI | CTRYAG | 5 cut(s) | 81, 168, 971, 1765, 2910 |
| BstUI | CGCG | 2 cut(s) | 1568, 2504 |
| BstV2I | GAAGAC | 6 cut(s) | 129, 681, 3691, 4050, 4547, 4962 |
| BstX2I | RGATCY | 8 cut(s) | 1630, 1963, 2050, 2740, 2764, 3049, 3419, 4308 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1531 |
| BstYI | RGATCY | 8 cut(s) | 1630, 1963, 2050, 2740, 2764, 3049, 3419, 4308 |
| BstZ17I | GTATAC | 3 cut(s) | 4276, 5015, 5029 |
| BsuI | GTATCC | 2 cut(s) | 40, 363 |
| BsuRI | GGCC | 5 cut(s) | 276, 1392, 3267, 3567, 5139 |
| BtgI | CCRYGG | 3 cut(s) | 2502, 4222, 4736 |
| BtgZI | GCGATG | 3 cut(s) | 150, 382, 1431 |
| BtrI | CACGTC | 1 cut(s) | 475 |
| BtsCI | GGATG | 9 cut(s) | 233, 567, 1434, 1453, 1910, 3033, 3670, 4636, 5096 |
| BtsI | GCAGTG | 3 cut(s) | 2525, 2706, 3200 |
| BveI | ACCTGC | 1 cut(s) | 4047 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2590, 3369, 4855 |
| CciI | TCATGA | 3 cut(s) | 3511, 4422, 4798 |
| CfoI | GCGC | 2 cut(s) | 819, 3187 |
| Cfr10I | RCCGGY | 3 cut(s) | 1283, 2495, 3307 |
| Cfr13I | GGNCC | 3 cut(s) | 274, 866, 1654 |
| Cfr42I | CCGCGG | 1 cut(s) | 2505 |
| CseI | GACGC | 3 cut(s) | 91, 467, 4861 |
| Csp6I | GTAC | 4 cut(s) | 908, 1007, 3459, 4014 |
| CviQI | GTAC | 4 cut(s) | 908, 1007, 3459, 4014 |
| DraI | TTTAAA | 2 cut(s) | 771, 3927 |
| DraIII | CACNNNGTG | 2 cut(s) | 830, 1202 |
| EaeI | YGGCCR | 1 cut(s) | 5137 |
| Eam1104I | CTCTTC | 6 cut(s) | 1118, 2122, 3009, 4431, 4956, 5055 |
| EarI | CTCTTC | 6 cut(s) | 1118, 2122, 3009, 4431, 4956, 5055 |
| EciI | GGCGGA | 1 cut(s) | 394 |
| Ecl136II | GAGCTC | 1 cut(s) | 5201 |
| Eco130I | CCWWGG | 3 cut(s) | 3236, 4222, 4736 |
| Eco24I | GRGCYC | 3 cut(s) | 3607, 4184, 5203 |
| Eco31I | GGTCTC | 1 cut(s) | 4736 |
| Eco32I | GATATC | 1 cut(s) | 1595 |
| Eco47I | GGWCC | 2 cut(s) | 866, 1654 |
| Eco53kI | GAGCTC | 1 cut(s) | 5201 |
| Eco57I | CTGAAG | 7 cut(s) | 1118, 2015, 2565, 2567, 2789, 3033, 3893 |
| EcoICRI | GAGCTC | 1 cut(s) | 5201 |
| EcoO109I | RGGNCCY | 2 cut(s) | 274, 1654 |
| EcoRI | GAATTC | 2 cut(s) | 792, 4284 |
| EcoRII | CCWGG | 6 cut(s) | 556, 868, 1023, 1648, 3415, 3607 |
| EcoRV | GATATC | 1 cut(s) | 1595 |
| EcoT14I | CCWWGG | 3 cut(s) | 3236, 4222, 4736 |
| EcoT22I | ATGCAT | 4 cut(s) | 3672, 3762, 4298, 4941 |
| EcoT38I | GRGCYC | 3 cut(s) | 3607, 4184, 5203 |
| ErhI | CCWWGG | 3 cut(s) | 3236, 4222, 4736 |
| Esp3I | CGTCTC | 1 cut(s) | 109 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 692, 724, 1205, 1237, 2129, 2161 |
| FaqI | GGGAC | 3 cut(s) | 407, 1667, 3354 |
| FauNDI | CATATG | 3 cut(s) | 1578, 4137, 4786 |
| FbaI | TGATCA | 2 cut(s) | 1408, 4326 |
| FokI | GGATG | 9 cut(s) | 240, 554, 1441, 1460, 1917, 3040, 3657, 4643, 5103 |
| FriOI | GRGCYC | 3 cut(s) | 3607, 4184, 5203 |
| FspAI | RTGCGCAY | 1 cut(s) | 3186 |
| FspI | TGCGCA | 2 cut(s) | 818, 3186 |
| GlaI | GCGC | 2 cut(s) | 818, 3186 |
| GsaI | CCCAGC | 2 cut(s) | 3604, 4435 |
| GsuI | CTGGAG | 5 cut(s) | 502, 967, 1046, 3591, 5217 |
| HaeIII | GGCC | 5 cut(s) | 276, 1392, 3267, 3567, 5139 |
| HapII | CCGG | 7 cut(s) | 1284, 2496, 3218, 3308, 3740, 5140, 5162 |
| HgaI | GACGC | 3 cut(s) | 91, 467, 4861 |
| HhaI | GCGC | 2 cut(s) | 819, 3187 |
| Hin1I | GRCGYC | 1 cut(s) | 102 |
| Hin6I | GCGC | 2 cut(s) | 817, 3185 |
| HinP1I | GCGC | 2 cut(s) | 817, 3185 |
| HincII | GTYRAC | 5 cut(s) | 7, 928, 1048, 3745, 3913 |
| HindII | GTYRAC | 5 cut(s) | 7, 928, 1048, 3745, 3913 |
| HindIII | AAGCTT | 5 cut(s) | 657, 874, 2579, 3875, 3942 |
| HpaI | GTTAAC | 1 cut(s) | 3913 |
| HpaII | CCGG | 7 cut(s) | 1284, 2496, 3218, 3308, 3740, 5140, 5162 |
| HphI | GGTGA | 6 cut(s) | 205, 2123, 3372, 3989, 4176, 4313 |
| Hpy99I | CGWCG | 4 cut(s) | 11, 267, 476, 3638 |
| Hsp92I | GRCGYC | 1 cut(s) | 102 |
| HspAI | GCGC | 2 cut(s) | 817, 3185 |
| KflI | GGGWCCC | 1 cut(s) | 1654 |
| Kpn2I | TCCGGA | 1 cut(s) | 3217 |
| KroI | GCCGGC | 1 cut(s) | 2495 |
| KroNI | GCCGGC | 1 cut(s) | 2497 |
| Ksp22I | TGATCA | 2 cut(s) | 1408, 4326 |
| KspAI | GTTAAC | 1 cut(s) | 3913 |
| KspI | CCGCGG | 1 cut(s) | 2505 |
| LguI | GCTCTTC | 1 cut(s) | 2122 |
| LmnI | GCTCC | 5 cut(s) | 1250, 1616, 2911, 3610, 5198 |
| MaeIII | GTNAC | 9 cut(s) | 647, 748, 886, 1339, 2399, 2971, 3120, 4253, 5186 |
| MbiI | CCGCTC | 2 cut(s) | 4320, 4768 |
| MfeI | CAATTG | 2 cut(s) | 4409, 4778 |
| MflI | RGATCY | 8 cut(s) | 1630, 1963, 2050, 2740, 2764, 3049, 3419, 4308 |
| MhlI | GDGCHC | 3 cut(s) | 3607, 4184, 5203 |
| MmeI | TCCRAC | 8 cut(s) | 699, 1182, 1288, 1479, 2082, 2812, 3005, 4885 |
| Mph1103I | ATGCAT | 4 cut(s) | 3672, 3762, 4298, 4941 |
| MroI | TCCGGA | 1 cut(s) | 3217 |
| MroNI | GCCGGC | 1 cut(s) | 2495 |
| MslI | CAYNNNNRTG | 5 cut(s) | 2320, 3074, 3579, 4136, 5052 |
| MspA1I | CMGCKG | 4 cut(s) | 976, 1833, 2504, 3818 |
| MspCI | CTTAAG | 1 cut(s) | 1775 |
| MspI | CCGG | 7 cut(s) | 1284, 2496, 3218, 3308, 3740, 5140, 5162 |
| MspR9I | CCNGG | 8 cut(s) | 558, 870, 1025, 1650, 3417, 3609, 3740, 5162 |
| MunI | CAATTG | 2 cut(s) | 4409, 4778 |
| Mva1269I | GAATGC | 4 cut(s) | 762, 3187, 3307, 3326 |
| MvaI | CCWGG | 6 cut(s) | 558, 870, 1025, 1650, 3417, 3609 |
| MvnI | CGCG | 2 cut(s) | 1568, 2504 |
| NaeI | GCCGGC | 1 cut(s) | 2497 |
| NciI | CCSGG | 2 cut(s) | 3740, 5162 |
| NcoI | CCATGG | 2 cut(s) | 4222, 4736 |
| NdeI | CATATG | 3 cut(s) | 1578, 4137, 4786 |
| NgoMIV | GCCGGC | 1 cut(s) | 2495 |
| NheI | GCTAGC | 2 cut(s) | 3994, 4148 |
| NlaIV | GGNNCC | 9 cut(s) | 288, 1632, 1655, 1656, 1795, 2004, 2500, 3078, 3606 |
| NmuCI | GTSAC | 2 cut(s) | 647, 4253 |
| NsbI | TGCGCA | 2 cut(s) | 818, 3186 |
| NsiI | ATGCAT | 4 cut(s) | 3672, 3762, 4298, 4941 |
| NspI | RCATGY | 4 cut(s) | 1701, 3646, 3764, 3966 |
| OliI | CACNNNNGTG | 2 cut(s) | 3074, 5052 |
| PagI | TCATGA | 3 cut(s) | 3511, 4422, 4798 |
| PciI | ACATGT | 2 cut(s) | 1697, 3642 |
| PciSI | GCTCTTC | 1 cut(s) | 2122 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 678 |
| PctI | GAATGC | 4 cut(s) | 762, 3187, 3307, 3326 |
| PdiI | GCCGGC | 1 cut(s) | 2497 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1307, 4790 |
| PfoI | TCCNGGA | 2 cut(s) | 868, 1023 |
| Ppu21I | YACGTR | 1 cut(s) | 421 |
| PpuMI | RGGWCCY | 1 cut(s) | 1654 |
| PscI | ACATGT | 2 cut(s) | 1697, 3642 |
| PshAI | GACNNNNGTC | 2 cut(s) | 477, 1935 |
| PshBI | ATTAAT | 3 cut(s) | 1617, 3209, 3807 |
| PsiI | TTATAA | 2 cut(s) | 2988, 4340 |
| Psp124BI | GAGCTC | 1 cut(s) | 5203 |
| Psp1406I | AACGTT | 1 cut(s) | 1854 |
| Psp5II | RGGWCCY | 1 cut(s) | 1654 |
| Psp6I | CCWGG | 6 cut(s) | 556, 868, 1023, 1648, 3415, 3607 |
| PspFI | CCCAGC | 2 cut(s) | 3600, 4431 |
| PspGI | CCWGG | 6 cut(s) | 556, 868, 1023, 1648, 3415, 3607 |
| PspN4I | GGNNCC | 9 cut(s) | 288, 1632, 1655, 1656, 1795, 2004, 2500, 3078, 3606 |
| PspPI | GGNCC | 3 cut(s) | 274, 866, 1654 |
| PspPPI | RGGWCCY | 1 cut(s) | 1654 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3233, 3265 |
| PstI | CTGCAG | 3 cut(s) | 85, 975, 1769 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2590, 3369, 4855 |
| PsuI | RGATCY | 8 cut(s) | 1630, 1963, 2050, 2740, 2764, 3049, 3419, 4308 |
| PvuII | CAGCTG | 3 cut(s) | 976, 1833, 3818 |
| RsaI | GTAC | 4 cut(s) | 909, 1008, 3460, 4015 |
| RsaNI | GTAC | 4 cut(s) | 908, 1007, 3459, 4014 |
| RseI | CAYNNNNRTG | 5 cut(s) | 2320, 3074, 3579, 4136, 5052 |
| SacI | GAGCTC | 1 cut(s) | 5203 |
| SacII | CCGCGG | 1 cut(s) | 2505 |
| SalI | GTCGAC | 1 cut(s) | 5 |
| SapI | GCTCTTC | 1 cut(s) | 2122 |
| Sau96I | GGNCC | 3 cut(s) | 274, 866, 1654 |
| ScaI | AGTACT | 2 cut(s) | 909, 4015 |
| ScrFI | CCNGG | 8 cut(s) | 558, 870, 1025, 1650, 3417, 3609, 3740, 5162 |
| SduI | GDGCHC | 3 cut(s) | 3607, 4184, 5203 |
| SfcI | CTRYAG | 5 cut(s) | 81, 168, 971, 1765, 2910 |
| Sfr303I | CCGCGG | 1 cut(s) | 2505 |
| SgrBI | CCGCGG | 1 cut(s) | 2505 |
| SinI | GGWCC | 2 cut(s) | 866, 1654 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 2320, 3074, 3579, 4136, 5052 |
| SspI | AATATT | 5 cut(s) | 1871, 2455, 3480, 3589, 3735 |
| SstI | GAGCTC | 1 cut(s) | 5203 |
| StyD4I | CCNGG | 8 cut(s) | 556, 868, 1023, 1648, 3415, 3607, 3738, 5160 |
| StyI | CCWWGG | 3 cut(s) | 3236, 4222, 4736 |
| TaqII | GACCGA | 1 cut(s) | 4760 |
| TatI | WGTACW | 2 cut(s) | 907, 4013 |
| TauI | GCSGC | 3 cut(s) | 1672, 4320, 4915 |
| TseFI | GTSAC | 2 cut(s) | 647, 4253 |
| Tsp45I | GTSAC | 2 cut(s) | 647, 4253 |
| TspGWI | ACGGA | 5 cut(s) | 315, 1074, 1828, 1943, 4841 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1307, 4790 |
| Vha464I | CTTAAG | 1 cut(s) | 1775 |
| VpaK11BI | GGWCC | 2 cut(s) | 866, 1654 |
| VspI | ATTAAT | 3 cut(s) | 1617, 3209, 3807 |
| XapI | RAATTY | 9 cut(s) | 208, 310, 792, 851, 1040, 2615, 4114, 4284, 4704 |
| XbaI | TCTAGA | 1 cut(s) | 4121 |
| XceI | RCATGY | 4 cut(s) | 1701, 3646, 3764, 3966 |
| XmaJI | CCTAGG | 1 cut(s) | 3236 |
| ZrmI | AGTACT | 2 cut(s) | 909, 4015 |
| Zsp2I | ATGCAT | 4 cut(s) | 3672, 3762, 4298, 4941 |