NB-ARC domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 85 | 7.2e-08 | TIR domain |
| NB-ARC | PF00931 | 87 - 232 | 2.8e-11 | NB-ARC domain |
| TIR | PF01582 | 262 - 396 | 1.2e-15 | TIR domain |
| NB-ARC | PF00931 | 419 - 570 | 2.9e-15 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 637 - 703 | 1.5e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 825 - 844 | 2.1e-06 | Leucine Rich Repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 4380 |
| AccB1I | GGYRCC | 2 cut(s) | 2855, 4495 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1295, 1540, 2567 |
| AccBSI | CCGCTC | 1 cut(s) | 3748 |
| AccI | GTMKAC | 2 cut(s) | 1314, 3476 |
| AccII | CGCG | 4 cut(s) | 296, 708, 3848, 3987 |
| AclI | AACGTT | 2 cut(s) | 922, 4730 |
| AcoI | YGGCCR | 4 cut(s) | 681, 1531, 2650, 3459 |
| AcuI | CTGAAG | 6 cut(s) | 151, 2488, 2817, 2909, 3047, 3122 |
| AcyI | GRCGYC | 1 cut(s) | 2692 |
| AdeI | CACNNNGTG | 1 cut(s) | 154 |
| AfaI | GTAC | 7 cut(s) | 61, 183, 961, 1131, 2679, 2785, 4593 |
| AfeI | AGCGCT | 1 cut(s) | 1441 |
| AflII | CTTAAG | 4 cut(s) | 2357, 2945, 4607, 4648 |
| AflIII | ACRYGT | 2 cut(s) | 2563, 4149 |
| AhlI | ACTAGT | 1 cut(s) | 4331 |
| AjiI | CACGTC | 1 cut(s) | 3474 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 924, 956 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1242, 1274, 3300, 3332 |
| Alw21I | GWGCWC | 4 cut(s) | 288, 330, 1593, 2079 |
| Alw44I | GTGCAC | 1 cut(s) | 2075 |
| Ama87I | CYCGRG | 7 cut(s) | 160, 307, 1756, 2128, 3092, 4363, 4741 |
| Aor51HI | AGCGCT | 1 cut(s) | 1441 |
| AoxI | GGCC | 6 cut(s) | 681, 1531, 1654, 2125, 2650, 3459 |
| ApaLI | GTGCAC | 1 cut(s) | 2075 |
| AseI | ATTAAT | 1 cut(s) | 4785 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2112, 4134 |
| AspA2I | CCTAGG | 1 cut(s) | 3755 |
| AspLEI | GCGC | 2 cut(s) | 1442, 1628 |
| AspS9I | GGNCC | 4 cut(s) | 278, 1199, 1603, 2126 |
| AsuC2I | CCSGG | 3 cut(s) | 1833, 2129, 2130 |
| AsuHPI | GGTGA | 6 cut(s) | 427, 1088, 1937, 2611, 3285, 3894 |
| AsuII | TTCGAA | 3 cut(s) | 951, 3366, 3558 |
| AsuNHI | GCTAGC | 1 cut(s) | 4508 |
| AvaI | CYCGRG | 7 cut(s) | 160, 307, 1756, 2128, 3092, 4363, 4741 |
| AvaII | GGWCC | 3 cut(s) | 278, 1199, 1603 |
| AvrII | CCTAGG | 1 cut(s) | 3755 |
| AxyI | CCTNAGG | 1 cut(s) | 26 |
| BaeGI | GKGCMC | 2 cut(s) | 2079, 2795 |
| BalI | TGGCCA | 2 cut(s) | 683, 3461 |
| BamHI | GGATCC | 2 cut(s) | 436, 1257 |
| BanI | GGYRCC | 2 cut(s) | 2855, 4495 |
| BanII | GRGCYC | 1 cut(s) | 288 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1320, 1352 |
| BauI | CACGAG | 2 cut(s) | 1499, 1992 |
| BbsI | GAAGAC | 4 cut(s) | 519, 881, 3936, 4150 |
| Bbv12I | GWGCWC | 4 cut(s) | 288, 330, 1593, 2079 |
| BccI | CCATC | 9 cut(s) | 651, 686, 805, 920, 1765, 2660, 4059, 4265, 4415 |
| BceAI | ACGGC | 3 cut(s) | 141, 615, 4610 |
| BclI | TGATCA | 1 cut(s) | 3951 |
| BcnI | CCSGG | 3 cut(s) | 1833, 2129, 2130 |
| BcuI | ACTAGT | 1 cut(s) | 4331 |
| BfmI | CTRYAG | 7 cut(s) | 174, 1025, 2231, 2347, 3193, 4373, 4633 |
| BfoI | RGCGCY | 1 cut(s) | 1443 |
| BfrI | CTTAAG | 4 cut(s) | 2357, 2945, 4607, 4648 |
| BfuAI | ACCTGC | 1 cut(s) | 4380 |
| BglII | AGATCT | 1 cut(s) | 3595 |
| BlnI | CCTAGG | 1 cut(s) | 3755 |
| BlpI | GCTNAGC | 1 cut(s) | 2873 |
| BmcAI | AGTACT | 1 cut(s) | 961 |
| Bme18I | GGWCC | 3 cut(s) | 278, 1199, 1603 |
| BmeT110I | CYCGRG | 7 cut(s) | 160, 307, 1756, 2128, 3092, 4363, 4741 |
| BmgBI | CACGTC | 1 cut(s) | 3474 |
| BmgT120I | GGNCC | 4 cut(s) | 278, 1199, 1603, 2126 |
| BmiI | GGNNCC | 6 cut(s) | 438, 1259, 1545, 2857, 3082, 4497 |
| BmrI | ACTGGG | 3 cut(s) | 721, 2989, 3971 |
| BmsI | GCATC | 7 cut(s) | 974, 1159, 2520, 2727, 3087, 3578, 4186 |
| BmtI | GCTAGC | 1 cut(s) | 4512 |
| BmuI | ACTGGG | 3 cut(s) | 721, 2989, 3971 |
| BpiI | GAAGAC | 4 cut(s) | 519, 881, 3936, 4150 |
| BpmI | CTGGAG | 5 cut(s) | 483, 1787, 1976, 3302, 4189 |
| Bpu10I | CCTNAGC | 1 cut(s) | 282 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2873 |
| Bpu14I | TTCGAA | 3 cut(s) | 951, 3366, 3558 |
| BpuEI | CTTGAG | 2 cut(s) | 316, 2561 |
| BpuMI | CCSGG | 3 cut(s) | 1833, 2129, 2130 |
| Bsa29I | ATCGAT | 3 cut(s) | 246, 690, 2664 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1217, 4176 |
| BsaHI | GRCGYC | 1 cut(s) | 2692 |
| BsaI | GGTCTC | 1 cut(s) | 2008 |
| BsaWI | WCCGGW | 1 cut(s) | 1605 |
| Bse118I | RCCGGY | 1 cut(s) | 1529 |
| Bse1I | ACTGG | 9 cut(s) | 466, 716, 1078, 2904, 2984, 3331, 3966, 4206, 4519 |
| Bse21I | CCTNAGG | 1 cut(s) | 26 |
| Bse3DI | GCAATG | 1 cut(s) | 2490 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1217, 4176 |
| BseCI | ATCGAT | 3 cut(s) | 246, 690, 2664 |
| BseGI | GGATG | 5 cut(s) | 721, 816, 989, 1426, 3593 |
| BseJI | GATNNNNATC | 2 cut(s) | 1217, 4176 |
| BseMI | GCAATG | 1 cut(s) | 2490 |
| BseMII | CTCAG | 9 cut(s) | 211, 273, 301, 1631, 2258, 2350, 3270, 3429, 3606 |
| BseNI | ACTGG | 9 cut(s) | 466, 716, 1078, 2904, 2984, 3331, 3966, 4206, 4519 |
| BseRI | GAGGAG | 2 cut(s) | 1465, 2963 |
| BseSI | GKGCMC | 2 cut(s) | 2079, 2795 |
| BsgI | GTGCAG | 3 cut(s) | 1083, 1604, 4302 |
| Bsh1236I | CGCG | 4 cut(s) | 296, 708, 3848, 3987 |
| Bsh1285I | CGRYCG | 1 cut(s) | 276 |
| BshFI | GGCC | 6 cut(s) | 683, 1533, 1656, 2127, 2652, 3461 |
| BshNI | GGYRCC | 2 cut(s) | 2855, 4495 |
| BshVI | ATCGAT | 3 cut(s) | 246, 690, 2664 |
| BsiEI | CGRYCG | 1 cut(s) | 276 |
| BsiHKAI | GWGCWC | 4 cut(s) | 288, 330, 1593, 2079 |
| BsiHKCI | CYCGRG | 7 cut(s) | 160, 307, 1756, 2128, 3092, 4363, 4741 |
| BsiSI | CCGG | 5 cut(s) | 1378, 1530, 1606, 1833, 2129 |
| BslFI | GGGAC | 3 cut(s) | 2045, 3343, 4724 |
| BsmBI | CGTCTC | 2 cut(s) | 138, 1477 |
| BsmFI | GGGAC | 3 cut(s) | 2045, 3343, 4724 |
| BsmI | GAATGC | 2 cut(s) | 1679, 3706 |
| BsnI | GGCC | 6 cut(s) | 683, 1533, 1656, 2127, 2652, 3461 |
| Bso31I | GGTCTC | 1 cut(s) | 2008 |
| BsoBI | CYCGRG | 7 cut(s) | 160, 307, 1756, 2128, 3092, 4363, 4741 |
| Bsp119I | TTCGAA | 3 cut(s) | 951, 3366, 3558 |
| Bsp1286I | GDGCHC | 5 cut(s) | 288, 330, 1593, 2079, 2795 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2873 |
| Bsp19I | CCATGG | 2 cut(s) | 1365, 1796 |
| Bsp68I | TCGCGA | 1 cut(s) | 3848 |
| BspANI | GGCC | 6 cut(s) | 683, 1533, 1656, 2127, 2652, 3461 |
| BspCNI | CTCAG | 9 cut(s) | 210, 274, 300, 1632, 2257, 2349, 3269, 3428, 3605 |
| BspDI | ATCGAT | 3 cut(s) | 246, 690, 2664 |
| BspFNI | CGCG | 4 cut(s) | 296, 708, 3848, 3987 |
| BspLI | GGNNCC | 6 cut(s) | 438, 1259, 1545, 2857, 3082, 4497 |
| BspMAI | CTGCAG | 4 cut(s) | 1029, 2235, 2351, 4377 |
| BspMI | ACCTGC | 1 cut(s) | 4380 |
| BspOI | GCTAGC | 1 cut(s) | 4512 |
| BspT104I | TTCGAA | 3 cut(s) | 951, 3366, 3558 |
| BspT107I | GGYRCC | 2 cut(s) | 2855, 4495 |
| BspTI | CTTAAG | 4 cut(s) | 2357, 2945, 4607, 4648 |
| BspTNI | GGTCTC | 1 cut(s) | 2008 |
| BsrBI | CCGCTC | 1 cut(s) | 3748 |
| BsrDI | GCAATG | 1 cut(s) | 2490 |
| BsrFI | RCCGGY | 1 cut(s) | 1529 |
| BsrI | ACTGG | 9 cut(s) | 466, 716, 1078, 2904, 2984, 3331, 3966, 4206, 4519 |
| BssAI | RCCGGY | 1 cut(s) | 1529 |
| BssNI | GRCGYC | 1 cut(s) | 2692 |
| BssSI | CACGAG | 2 cut(s) | 1499, 1992 |
| BssT1I | CCWWGG | 8 cut(s) | 796, 1173, 1365, 1796, 2711, 3187, 3755, 4140 |
| Bst2BI | CACGAG | 2 cut(s) | 1499, 1992 |
| Bst6I | CTCTTC | 5 cut(s) | 390, 1692, 2042, 2254, 3368 |
| BstACI | GRCGYC | 1 cut(s) | 2692 |
| BstAFI | CTTAAG | 4 cut(s) | 2357, 2945, 4607, 4648 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3004 |
| BstBI | TTCGAA | 3 cut(s) | 951, 3366, 3558 |
| BstC8I | GCNNGC | 6 cut(s) | 1354, 1535, 1790, 3796, 4510, 4701 |
| BstDSI | CCRYGG | 5 cut(s) | 353, 1365, 1734, 1796, 3219 |
| BstEII | GGTNACC | 2 cut(s) | 695, 4367 |
| BstF5I | GGATG | 5 cut(s) | 721, 816, 989, 1426, 3593 |
| BstFNI | CGCG | 4 cut(s) | 296, 708, 3848, 3987 |
| BstH2I | RGCGCY | 1 cut(s) | 1443 |
| BstHHI | GCGC | 2 cut(s) | 1442, 1628 |
| BstMCI | CGRYCG | 1 cut(s) | 276 |
| BstNSI | RCATGY | 3 cut(s) | 1498, 2567, 4153 |
| BstPI | GGTNACC | 2 cut(s) | 695, 4367 |
| BstSFI | CTRYAG | 7 cut(s) | 174, 1025, 2231, 2347, 3193, 4373, 4633 |
| BstSLI | GKGCMC | 2 cut(s) | 2079, 2795 |
| BstUI | CGCG | 4 cut(s) | 296, 708, 3848, 3987 |
| BstV2I | GAAGAC | 4 cut(s) | 519, 881, 3936, 4150 |
| BstX2I | RGATCY | 7 cut(s) | 30, 95, 436, 1257, 2707, 2761, 3595 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1880, 2648, 3326, 4213 |
| BstYI | RGATCY | 7 cut(s) | 30, 95, 436, 1257, 2707, 2761, 3595 |
| Bsu15I | ATCGAT | 3 cut(s) | 246, 690, 2664 |
| Bsu36I | CCTNAGG | 1 cut(s) | 26 |
| BsuRI | GGCC | 6 cut(s) | 683, 1533, 1656, 2127, 2652, 3461 |
| BsuTUI | ATCGAT | 3 cut(s) | 246, 690, 2664 |
| BtgI | CCRYGG | 5 cut(s) | 353, 1365, 1734, 1796, 3219 |
| BtgZI | GCGATG | 2 cut(s) | 898, 3829 |
| BtrI | CACGTC | 1 cut(s) | 3474 |
| BtsCI | GGATG | 5 cut(s) | 721, 816, 989, 1426, 3593 |
| BtsI | GCAGTG | 3 cut(s) | 1684, 3651, 4290 |
| BtuMI | TCGCGA | 1 cut(s) | 3848 |
| BveI | ACCTGC | 1 cut(s) | 4380 |
| Cac8I | GCNNGC | 6 cut(s) | 1354, 1535, 1790, 3796, 4510, 4701 |
| CfoI | GCGC | 2 cut(s) | 1442, 1628 |
| Cfr10I | RCCGGY | 1 cut(s) | 1529 |
| Cfr13I | GGNCC | 4 cut(s) | 278, 1199, 1603, 2126 |
| Cfr9I | CCCGGG | 1 cut(s) | 2128 |
| ClaI | ATCGAT | 3 cut(s) | 246, 690, 2664 |
| CseI | GACGC | 2 cut(s) | 1459, 2681 |
| Csp6I | GTAC | 7 cut(s) | 60, 182, 960, 1130, 2678, 2784, 4592 |
| CviQI | GTAC | 7 cut(s) | 60, 182, 960, 1130, 2678, 2784, 4592 |
| DraI | TTTAAA | 2 cut(s) | 3156, 4735 |
| DraIII | CACNNNGTG | 1 cut(s) | 154 |
| EaeI | YGGCCR | 4 cut(s) | 681, 1531, 2650, 3459 |
| Eam1104I | CTCTTC | 5 cut(s) | 390, 1692, 2042, 2254, 3368 |
| EarI | CTCTTC | 5 cut(s) | 390, 1692, 2042, 2254, 3368 |
| EciI | GGCGGA | 4 cut(s) | 557, 1275, 2162, 2918 |
| Ecl136II | GAGCTC | 1 cut(s) | 286 |
| Eco130I | CCWWGG | 8 cut(s) | 796, 1173, 1365, 1796, 2711, 3187, 3755, 4140 |
| Eco24I | GRGCYC | 1 cut(s) | 288 |
| Eco31I | GGTCTC | 1 cut(s) | 2008 |
| Eco32I | GATATC | 2 cut(s) | 976, 2803 |
| Eco47I | GGWCC | 3 cut(s) | 278, 1199, 1603 |
| Eco47III | AGCGCT | 1 cut(s) | 1441 |
| Eco53kI | GAGCTC | 1 cut(s) | 286 |
| Eco57I | CTGAAG | 6 cut(s) | 151, 2488, 2817, 2909, 3047, 3122 |
| Eco81I | CCTNAGG | 1 cut(s) | 26 |
| Eco88I | CYCGRG | 7 cut(s) | 160, 307, 1756, 2128, 3092, 4363, 4741 |
| Eco91I | GGTNACC | 2 cut(s) | 695, 4367 |
| EcoICRI | GAGCTC | 1 cut(s) | 286 |
| EcoO65I | GGTNACC | 2 cut(s) | 695, 4367 |
| EcoRI | GAATTC | 2 cut(s) | 3410, 4235 |
| EcoRV | GATATC | 2 cut(s) | 976, 2803 |
| EcoT14I | CCWWGG | 8 cut(s) | 796, 1173, 1365, 1796, 2711, 3187, 3755, 4140 |
| EcoT22I | ATGCAT | 2 cut(s) | 2631, 4179 |
| EcoT38I | GRGCYC | 1 cut(s) | 288 |
| ErhI | CCWWGG | 8 cut(s) | 796, 1173, 1365, 1796, 2711, 3187, 3755, 4140 |
| Esp3I | CGTCTC | 2 cut(s) | 138, 1477 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1116, 1148, 2799, 2831, 4590, 4622 |
| FaqI | GGGAC | 3 cut(s) | 2045, 3343, 4724 |
| FauI | CCCGC | 1 cut(s) | 3627 |
| FauNDI | CATATG | 1 cut(s) | 822 |
| FbaI | TGATCA | 1 cut(s) | 3951 |
| FblI | GTMKAC | 2 cut(s) | 1314, 3476 |
| FokI | GGATG | 5 cut(s) | 728, 823, 996, 1433, 3600 |
| FriOI | GRGCYC | 1 cut(s) | 288 |
| GlaI | GCGC | 2 cut(s) | 1441, 1627 |
| GsuI | CTGGAG | 5 cut(s) | 483, 1787, 1976, 3302, 4189 |
| HaeII | RGCGCY | 1 cut(s) | 1443 |
| HaeIII | GGCC | 6 cut(s) | 683, 1533, 1656, 2127, 2652, 3461 |
| HapII | CCGG | 5 cut(s) | 1378, 1530, 1606, 1833, 2129 |
| HgaI | GACGC | 2 cut(s) | 1459, 2681 |
| HhaI | GCGC | 2 cut(s) | 1442, 1628 |
| Hin1I | GRCGYC | 1 cut(s) | 2692 |
| Hin6I | GCGC | 2 cut(s) | 1440, 1626 |
| HinP1I | GCGC | 2 cut(s) | 1440, 1626 |
| HincII | GTYRAC | 1 cut(s) | 2521 |
| HindII | GTYRAC | 1 cut(s) | 2521 |
| HindIII | AAGCTT | 4 cut(s) | 666, 1893, 3113, 4262 |
| HpaII | CCGG | 5 cut(s) | 1378, 1530, 1606, 1833, 2129 |
| HphI | GGTGA | 6 cut(s) | 427, 1088, 1937, 2611, 3285, 3894 |
| Hpy99I | CGWCG | 4 cut(s) | 368, 1812, 2697, 3605 |
| HpyCH4IV | ACGT | 5 cut(s) | 922, 1275, 2150, 3473, 4730 |
| HpySE526I | ACGT | 5 cut(s) | 922, 1275, 2150, 3473, 4730 |
| Hsp92I | GRCGYC | 1 cut(s) | 2692 |
| HspAI | GCGC | 2 cut(s) | 1440, 1626 |
| Ksp22I | TGATCA | 1 cut(s) | 3951 |
| LmnI | GCTCC | 3 cut(s) | 673, 1588, 2715 |
| LweI | GCATC | 7 cut(s) | 974, 1159, 2520, 2727, 3087, 3578, 4186 |
| MaeII | ACGT | 5 cut(s) | 922, 1275, 2150, 3473, 4730 |
| MaeIII | GTNAC | 8 cut(s) | 415, 695, 1029, 2599, 3469, 4285, 4367, 4723 |
| MbiI | CCGCTC | 1 cut(s) | 3748 |
| MfeI | CAATTG | 3 cut(s) | 139, 441, 1088 |
| MflI | RGATCY | 7 cut(s) | 30, 95, 436, 1257, 2707, 2761, 3595 |
| MhlI | GDGCHC | 5 cut(s) | 288, 330, 1593, 2079, 2795 |
| MlsI | TGGCCA | 2 cut(s) | 683, 3461 |
| MluNI | TGGCCA | 2 cut(s) | 683, 3461 |
| MlyI | GAGTC | 8 cut(s) | 564, 848, 1408, 2105, 2964, 3972, 4196, 4308 |
| MmeI | TCCRAC | 3 cut(s) | 1190, 1499, 4097 |
| Mox20I | TGGCCA | 2 cut(s) | 683, 3461 |
| Mph1103I | ATGCAT | 2 cut(s) | 2631, 4179 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2112, 4134 |
| MscI | TGGCCA | 2 cut(s) | 683, 3461 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1499, 2196, 3711 |
| Msp20I | TGGCCA | 2 cut(s) | 683, 3461 |
| MspA1I | CMGCKG | 2 cut(s) | 1537, 2236 |
| MspCI | CTTAAG | 4 cut(s) | 2357, 2945, 4607, 4648 |
| MspI | CCGG | 5 cut(s) | 1378, 1530, 1606, 1833, 2129 |
| MunI | CAATTG | 3 cut(s) | 139, 441, 1088 |
| Mva1269I | GAATGC | 2 cut(s) | 1679, 3706 |
| MvnI | CGCG | 4 cut(s) | 296, 708, 3848, 3987 |
| NciI | CCSGG | 3 cut(s) | 1833, 2129, 2130 |
| NcoI | CCATGG | 2 cut(s) | 1365, 1796 |
| NdeI | CATATG | 1 cut(s) | 822 |
| NheI | GCTAGC | 1 cut(s) | 4508 |
| NlaIV | GGNNCC | 6 cut(s) | 438, 1259, 1545, 2857, 3082, 4497 |
| NmeAIII | GCCGAG | 2 cut(s) | 2119, 2678 |
| NmuCI | GTSAC | 4 cut(s) | 415, 2599, 3469, 4285 |
| NruI | TCGCGA | 1 cut(s) | 3848 |
| NsiI | ATGCAT | 2 cut(s) | 2631, 4179 |
| NspI | RCATGY | 3 cut(s) | 1498, 2567, 4153 |
| NspV | TTCGAA | 3 cut(s) | 951, 3366, 3558 |
| PaeR7I | CTCGAG | 4 cut(s) | 160, 307, 1756, 3092 |
| PasI | CCCWGGG | 1 cut(s) | 2028 |
| PciI | ACATGT | 2 cut(s) | 2563, 4149 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 321 |
| PctI | GAATGC | 2 cut(s) | 1679, 3706 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2112, 4134 |
| PfeI | GAWTC | 7 cut(s) | 312, 1081, 1749, 2883, 3382, 3560, 4120 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1295, 1540, 2567 |
| PfoI | TCCNGGA | 1 cut(s) | 1201 |
| Ple19I | CGATCG | 1 cut(s) | 276 |
| PleI | GAGTC | 8 cut(s) | 563, 848, 1408, 2104, 2964, 3972, 4196, 4307 |
| PpsI | GAGTC | 8 cut(s) | 563, 848, 1408, 2104, 2964, 3972, 4196, 4307 |
| PscI | ACATGT | 2 cut(s) | 2563, 4149 |
| PshBI | ATTAAT | 1 cut(s) | 4785 |
| Psp124BI | GAGCTC | 1 cut(s) | 288 |
| Psp1406I | AACGTT | 2 cut(s) | 922, 4730 |
| PspEI | GGTNACC | 2 cut(s) | 695, 4367 |
| PspN4I | GGNNCC | 6 cut(s) | 438, 1259, 1545, 2857, 3082, 4497 |
| PspPI | GGNCC | 4 cut(s) | 278, 1199, 1603, 2126 |
| PspXI | VCTCGAGB | 1 cut(s) | 1756 |
| PstI | CTGCAG | 4 cut(s) | 1029, 2235, 2351, 4377 |
| PsuI | RGATCY | 7 cut(s) | 30, 95, 436, 1257, 2707, 2761, 3595 |
| PvuI | CGATCG | 1 cut(s) | 276 |
| PvuII | CAGCTG | 2 cut(s) | 1537, 2236 |
| RruI | TCGCGA | 1 cut(s) | 3848 |
| RsaI | GTAC | 7 cut(s) | 61, 183, 961, 1131, 2679, 2785, 4593 |
| RsaNI | GTAC | 7 cut(s) | 60, 182, 960, 1130, 2678, 2784, 4592 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1499, 2196, 3711 |
| SacI | GAGCTC | 1 cut(s) | 288 |
| Sau96I | GGNCC | 4 cut(s) | 278, 1199, 1603, 2126 |
| SbfI | CCTGCAGG | 1 cut(s) | 4377 |
| ScaI | AGTACT | 1 cut(s) | 961 |
| SchI | GAGTC | 8 cut(s) | 564, 848, 1408, 2105, 2964, 3972, 4196, 4308 |
| SdaI | CCTGCAGG | 1 cut(s) | 4377 |
| SduI | GDGCHC | 5 cut(s) | 288, 330, 1593, 2079, 2795 |
| SfaNI | GCATC | 7 cut(s) | 974, 1159, 2520, 2727, 3087, 3578, 4186 |
| SfcI | CTRYAG | 7 cut(s) | 174, 1025, 2231, 2347, 3193, 4373, 4633 |
| Sfr274I | CTCGAG | 4 cut(s) | 160, 307, 1756, 3092 |
| SfuI | TTCGAA | 3 cut(s) | 951, 3366, 3558 |
| SinI | GGWCC | 3 cut(s) | 278, 1199, 1603 |
| SlaI | CTCGAG | 4 cut(s) | 160, 307, 1756, 3092 |
| SmaI | CCCGGG | 1 cut(s) | 2130 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1499, 2196, 3711 |
| SpeI | ACTAGT | 1 cut(s) | 4331 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 4377 |
| SspI | AATATT | 1 cut(s) | 3301 |
| SstI | GAGCTC | 1 cut(s) | 288 |
| StyI | CCWWGG | 8 cut(s) | 796, 1173, 1365, 1796, 2711, 3187, 3755, 4140 |
| TaiI | ACGT | 5 cut(s) | 925, 1278, 2153, 3476, 4733 |
| TatI | WGTACW | 2 cut(s) | 959, 2677 |
| TauI | GCSGC | 3 cut(s) | 41, 576, 3751 |
| TfiI | GAWTC | 7 cut(s) | 312, 1081, 1749, 2883, 3382, 3560, 4120 |
| TseFI | GTSAC | 4 cut(s) | 415, 2599, 3469, 4285 |
| Tsp45I | GTSAC | 4 cut(s) | 415, 2599, 3469, 4285 |
| TspGWI | ACGGA | 6 cut(s) | 342, 1435, 1751, 1796, 3937, 4566 |
| TspMI | CCCGGG | 1 cut(s) | 2128 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1295, 1540, 2567 |
| Vha464I | CTTAAG | 4 cut(s) | 2357, 2945, 4607, 4648 |
| VneI | GTGCAC | 1 cut(s) | 2075 |
| VpaK11BI | GGWCC | 3 cut(s) | 278, 1199, 1603 |
| VspI | ATTAAT | 1 cut(s) | 4785 |
| XbaI | TCTAGA | 2 cut(s) | 3688, 4267 |
| XceI | RCATGY | 3 cut(s) | 1498, 2567, 4153 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 803, 1486, 1880 |
| XhoI | CTCGAG | 4 cut(s) | 160, 307, 1756, 3092 |
| XmaI | CCCGGG | 1 cut(s) | 2128 |
| XmaJI | CCTAGG | 1 cut(s) | 3755 |
| XmiI | GTMKAC | 2 cut(s) | 1314, 3476 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2112, 4134 |
| ZrmI | AGTACT | 1 cut(s) | 961 |
| Zsp2I | ATGCAT | 2 cut(s) | 2631, 4179 |