AT3G51760

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015801
Physical Location & Seq
Reverse (-)
19197337 .. 19199516
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51760.3

Sequence Viewer

Length: 780 bp
ATGATTTTGTATCTTACGGTTGAAGAAATGATGGATATTAACCGATCCCGAAGATTGAACTTCAATGCTCCATTCTTGTCGACGAAGCGCCATGTCACCCAAGAGAAGCTTCCGGGCCAGTTTCCGGAAGCTTCTGTTCCATTTTGCTGGGAAACCGCTCCCGGGATGCCCAAGAACTCGTCTCATTTGAAAAATGACGCTGAATCTGAAACGCCCCGGCTCAAACTACCTCCTGGAAGACTGAAGGTGCAAGTTACTGGTAAAAATGATGATCTTGATGACGCAAGTGAGAGTTTAACACCAGCTAAATTGTTGCATATGAAGAAACGCAACAATCAGGAATATTTCCATCAAACCAACCAAGACGCGGTCGATGTCTTGTCTCTCACGCAAGCTATAGACATGGTCGAACTCCCAAAAGATAGCGTTTCAGAATCAGATGATGATAGAAGCAGCGTAGGAGGTGACTCAAACGGGTACTTAACAATGGAGAGCACAGAGCGAAGCGAAGATATGTCACCGAGTTACATAATAGAGCGGTTTCTACCGGATGCAGCGGCTCTAGCAGCCGTGACATCAGCGGCTAGCCAAAGGAGGAAGAAGAAGCTCTCTTATTTGAGTGGTGAAACGGTGAGACAGTCTTGTTTTTCACCAAAAGCTTGTGGATTACATGTATTGCTGCCTTGGAGCACTAAGCATAGAATCTGTGGCGTCAAAAACGCCTTTTCTCCATCTTCACACGTCCACTTGCAACCCAAGTTTATTACAAAAGATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

259

Amino Acids

28.96

Weight (kDa)

7.09

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 35 - 193 6e-12 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015801)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51760 AT3G51760 AT3G51760 AT3G51760
malus_domestica MD04G1163000.v1.1
prunus_persica Prupe.6G282500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0462281
rosa_multiflora Rmu_co8387589.1_g000001 Rmu_sc0001553.1_g000001
rosa_roxburghii Rroxscaffold_6G00417620
rosa_samantha Rh3AG114200 Rh3BG117300 Rh3CG120100 Rh3DG119100
rosa_wichuraiana Rw3G009640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 158, 538
AccI GTMKAC 1 cut(s) 80
AccII CGCG 1 cut(s) 368
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 5 cut(s) 156, 368, 538, 557, 581
AclWI GGATC 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 711
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 3 cut(s) 124, 162, 367
AflIII ACRYGT 2 cut(s) 670, 739
AgsI TTSAA 4 cut(s) 23, 58, 64, 190
AjiI CACGTC 1 cut(s) 742
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AluBI AGCT 6 cut(s) 109, 131, 305, 395, 607, 659
AluI AGCT 6 cut(s) 109, 131, 305, 395, 607, 659
Alw21I GWGCWC 2 cut(s) 497, 692
Alw26I GTCTC 3 cut(s) 186, 387, 628
AlwI GGATC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 4 cut(s) 453, 554, 566, 679
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 4 cut(s) 114, 162, 163, 217
AsuHPI GGTGA 6 cut(s) 88, 476, 510, 635, 642, 643
AsuNHI GCTAGC 1 cut(s) 584
AvaI CYCGRG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 244
Bbv12I GWGCWC 2 cut(s) 497, 692
BbvI GCAGC 4 cut(s) 465, 566, 578, 666
BccI CCATC 3 cut(s) 25, 357, 739
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 4 cut(s) 114, 162, 163, 217
BcoDI GTCTC 3 cut(s) 186, 387, 628
BfaI CTAG 3 cut(s) 563, 585, 778
BfmI CTRYAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 91
BisI GCNGC 6 cut(s) 454, 555, 558, 567, 582, 680
BlsI GCNGC 6 cut(s) 455, 556, 559, 568, 583, 681
Bme1390I CCNGG 5 cut(s) 114, 162, 163, 217, 234
BmeT110I CYCGRG 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 742
BmgT120I GGNCC 1 cut(s) 115
BmrFI CCNGG 5 cut(s) 114, 162, 163, 217, 234
BmsI GCATC 2 cut(s) 156, 541
BmtI GCTAGC 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 244
BpuMI CCSGG 4 cut(s) 114, 162, 163, 217
BsaHI GRCGYC 1 cut(s) 711
BsaJI CCNNGG 3 cut(s) 161, 215, 683
BsaWI WCCGGW 2 cut(s) 124, 547
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 162, 367
Bse1I ACTGG 2 cut(s) 118, 262
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 161, 215, 683
BseGI GGATG 2 cut(s) 171, 556
BseLI CCNNNNNNNGG 3 cut(s) 124, 162, 367
BseNI ACTGG 2 cut(s) 118, 262
BseXI GCAGC 4 cut(s) 465, 566, 578, 666
BseYI CCCAGC 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 368
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 2 cut(s) 497, 692
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 5 cut(s) 113, 125, 162, 217, 548
BslI CCNNNNNNNGG 3 cut(s) 124, 162, 367
BsmAI GTCTC 3 cut(s) 186, 387, 628
BsmBI CGTCTC 1 cut(s) 186
BsnI GGCC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 497, 692
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 44, 271
BspACI CCGC 5 cut(s) 156, 368, 538, 557, 581
BspANI GGCC 1 cut(s) 117
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 1 cut(s) 368
BspOI GCTAGC 1 cut(s) 588
BspPI GGATC 1 cut(s) 39
BsrBI CCGCTC 2 cut(s) 158, 538
BsrI ACTGG 2 cut(s) 118, 262
BssECI CCNNGG 3 cut(s) 161, 215, 683
BssMI GATC 2 cut(s) 44, 271
BssNI GRCGYC 1 cut(s) 711
BssT1I CCWWGG 1 cut(s) 683
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 19, 631, 639
BstACI GRCGYC 1 cut(s) 711
BstC8I GCNNGC 2 cut(s) 393, 586
BstDEI CTNAG 1 cut(s) 693
BstF5I GGATG 2 cut(s) 171, 556
BstFNI CGCG 1 cut(s) 368
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 2 cut(s) 47, 274
BstMAI GTCTC 3 cut(s) 186, 387, 628
BstMBI GATC 2 cut(s) 44, 271
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 2 cut(s) 563, 566
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 5 cut(s) 112, 160, 161, 215, 232
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 4 cut(s) 465, 566, 578, 666
BstV2I GAAGAC 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 117
BtrI CACGTC 1 cut(s) 742
BtsCI GGATG 2 cut(s) 171, 556
Cac8I GCNNGC 2 cut(s) 393, 586
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 115
Cfr9I CCCGGG 1 cut(s) 161
CseI GACGC 4 cut(s) 206, 290, 374, 700
Csp6I GTAC 1 cut(s) 478
CviAII CATG 3 cut(s) 92, 403, 671
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 1 cut(s) 693
DpnI GATC 2 cut(s) 46, 273
DpnII GATC 2 cut(s) 44, 271
Eco130I CCWWGG 1 cut(s) 683
Eco57I CTGAAG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 683
ErhI CCWWGG 1 cut(s) 683
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 3 cut(s) 95, 406, 674
FaiI YATR 9 cut(s) 93, 318, 320, 398, 404, 515, 530, 672, 699
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 3 cut(s) 91, 402, 670
FauNDI CATATG 1 cut(s) 318
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 6 cut(s) 454, 555, 558, 567, 582, 680
FokI GGATG 2 cut(s) 178, 563
Fsp4HI GCNGC 6 cut(s) 454, 555, 558, 567, 582, 680
FspBI CTAG 3 cut(s) 563, 585, 778
GlaI GCGC 1 cut(s) 89
GluI GCNGC 6 cut(s) 454, 555, 558, 567, 582, 680
GsaI CCCAGC 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 91
HaeIII GGCC 1 cut(s) 117
HapII CCGG 5 cut(s) 113, 125, 162, 217, 548
HgaI GACGC 4 cut(s) 206, 290, 374, 700
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 3 cut(s) 95, 406, 674
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 3 cut(s) 107, 129, 657
HinfI GANTC 4 cut(s) 203, 434, 467, 702
HpaII CCGG 5 cut(s) 113, 125, 162, 217, 548
HphI GGTGA 6 cut(s) 88, 476, 510, 635, 642, 643
Hpy166II GTNNAC 2 cut(s) 81, 745
Hpy188I TCNGA 3 cut(s) 208, 433, 439
Hpy188III TCNNGA 4 cut(s) 48, 125, 275, 338
Hpy8I GTNNAC 2 cut(s) 81, 745
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 3 cut(s) 19, 631, 639
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 4 cut(s) 250, 316, 554, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 563, 566
HpyF3I CTNAG 1 cut(s) 693
HpySE526I ACGT 1 cut(s) 741
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 3 cut(s) 95, 406, 674
HspAI GCGC 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 44, 271
LmnI GCTCC 3 cut(s) 73, 163, 687
Lsp1109I GCAGC 4 cut(s) 465, 566, 578, 666
LweI GCATC 2 cut(s) 156, 541
MaeI CTAG 3 cut(s) 563, 585, 778
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 6 cut(s) 94, 253, 464, 516, 524, 571
MalI GATC 2 cut(s) 46, 273
MbiI CCGCTC 2 cut(s) 158, 538
MboI GATC 2 cut(s) 44, 271
MboII GAAGA 8 cut(s) 35, 63, 249, 334, 521, 610, 613, 726
MhlI GDGCHC 2 cut(s) 497, 692
MluCI AATT 1 cut(s) 308
MlyI GAGTC 1 cut(s) 461
MnlI CCTC 3 cut(s) 240, 455, 588
MroI TCCGGA 1 cut(s) 124
MseI TTAA 3 cut(s) 39, 296, 482
MspA1I CMGCKG 2 cut(s) 557, 581
MspI CCGG 5 cut(s) 113, 125, 162, 217, 548
MspR9I CCNGG 5 cut(s) 114, 162, 163, 217, 234
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 563, 566
NciI CCSGG 4 cut(s) 114, 162, 163, 217
NdeI CATATG 1 cut(s) 318
NdeII GATC 2 cut(s) 44, 271
NheI GCTAGC 1 cut(s) 584
NlaIII CATG 3 cut(s) 95, 406, 674
NmuCI GTSAC 4 cut(s) 94, 464, 516, 571
NspI RCATGY 1 cut(s) 674
PciI ACATGT 1 cut(s) 670
PfeI GAWTC 3 cut(s) 203, 434, 702
PflFI GACNNNGTC 2 cut(s) 368, 404
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 6 cut(s) 455, 556, 559, 568, 583, 681
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
PscI ACATGT 1 cut(s) 670
Psp6I CCWGG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 1 cut(s) 115
PsyI GACNNNGTC 2 cut(s) 368, 404
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SalI GTCGAC 1 cut(s) 79
SaqAI TTAA 3 cut(s) 39, 296, 482
SatI GCNGC 6 cut(s) 454, 555, 558, 567, 582, 680
Sau3AI GATC 2 cut(s) 44, 271
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 5 cut(s) 114, 162, 163, 217, 234
SduI GDGCHC 2 cut(s) 497, 692
SfaNI GCATC 2 cut(s) 156, 541
SfcI CTRYAG 1 cut(s) 396
SmaI CCCGGG 1 cut(s) 163
Sse9I AATT 1 cut(s) 308
SsiI CCGC 5 cut(s) 156, 368, 538, 557, 581
SspI AATATT 1 cut(s) 344
SspMI CTAG 3 cut(s) 563, 585, 778
StyD4I CCNGG 5 cut(s) 112, 160, 161, 215, 232
StyI CCWWGG 1 cut(s) 683
TaaI ACNGT 3 cut(s) 19, 631, 639
TaiI ACGT 1 cut(s) 744
TaqI TCGA 3 cut(s) 80, 372, 408
TasI AATT 1 cut(s) 308
TauI GCSGC 2 cut(s) 560, 584
TfiI GAWTC 3 cut(s) 203, 434, 702
Tru1I TTAA 3 cut(s) 39, 296, 482
Tru9I TTAA 3 cut(s) 39, 296, 482
TseFI GTSAC 4 cut(s) 94, 464, 516, 571
TseI GCWGC 4 cut(s) 453, 554, 566, 679
Tsp45I GTSAC 4 cut(s) 94, 464, 516, 571
TspDTI ATGAA 1 cut(s) 335
TspMI CCCGGG 1 cut(s) 161
Tth111I GACNNNGTC 2 cut(s) 368, 404
XceI RCATGY 1 cut(s) 674
XmaI CCCGGG 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 80
XspI CTAG 3 cut(s) 563, 585, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.