Rh3BG117300

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015801
Physical Location & Seq
Reverse (-)
9628398 .. 9629192
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG117300.1

Sequence Viewer

Length: 795 bp
ATGCTGAACTTCAATGCACCACTCCTCTCAACAAGGCGTCCCAGAAACTCAAGGAGCACAAGATTACATGGCAGGTCACTGAGTGCGAGTGAAGAAAGAGTTCCCTTTTCGTGGGAACAAGCTCCTGGCAAGTCCAAGTATCCAAACACAAGCGACGATAACCATGATGGTGACACACCCCGGCCAAAGCTGCCCCCGGGCTGGTGGCACTGGCACAAGCCTCTTGAATCAACTAACGTTGTTGTTCTGGATAAAGAGAATGAGCAGACACCTCATGACCATGATGATGGATGTGATGCTGATGTTGATGATGATGTTCGCGCTGTTGACTACAATTATGTTGATGATCCTGATTTCGACGATGAAGCCTTCTCCGATGCCATAGATGTGTTCTCATTGTCAGAGGCTATAGACATTGTGGAAAAGAAGGCACAACGAGAACATGATCACTCAGATGCTCTGAAGTTGAAGCTCGCAGAGTCCAGTGAGATGAATCAACTGTCTCCAAACTACATAATCGAGCGCTTTCTTCCAGACGCCGCTGCATTGGCTGCATCATCTGCTATAAATCTAAGTGTATCACAGATCAATTCAAACCAGAAACTTTGTTATCCATGGAATTACCCTGAACCGGAGGCTTGCGTGTCAAGAACAGTTGGGCAAGCTCACTCTTCACCTAGGGGTTGTGGTTTCTTCCCTTGGCGGATGAAGCAGTACAAGCTCTGTGGTATAAAGAGCCCTGTAGTGTGTTCACAACAACCTCAGTCTAGTGTAAAACACAAAAAACATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

264

Amino Acids

29.8

Weight (kDa)

5.54

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 2 - 188 1.6e-08 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015801)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51760 AT3G51760 AT3G51760 AT3G51760
malus_domestica MD04G1163000.v1.1
prunus_persica Prupe.6G282500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0462281
rosa_multiflora Rmu_co8387589.1_g000001 Rmu_sc0001553.1_g000001
rosa_roxburghii Rroxscaffold_6G00417620
rosa_samantha Rh3AG114200 Rh3BG117300 Rh3CG120100 Rh3DG119100
rosa_wichuraiana Rw3G009640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AccII CGCG 1 cut(s) 321
AciI CCGC 2 cut(s) 540, 703
AclI AACGTT 1 cut(s) 237
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 482
AcyI GRCGYC 2 cut(s) 37, 537
AdeI CACNNNGTG 1 cut(s) 83
AfaI GTAC 1 cut(s) 716
AfeI AGCGCT 1 cut(s) 524
AfiI CCNNNNNNNGG 3 cut(s) 111, 201, 631
AgsI TTSAA 4 cut(s) 13, 227, 469, 594
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 5 cut(s) 122, 190, 472, 665, 721
AluI AGCT 5 cut(s) 122, 190, 472, 665, 721
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 507
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 196
Aor51HI AGCGCT 1 cut(s) 524
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 3 cut(s) 190, 542, 551
Asp700I GAANNNNTTC 1 cut(s) 99
AspA2I CCTAGG 1 cut(s) 677
AspLEI GCGC 2 cut(s) 323, 525
AsuC2I CCSGG 3 cut(s) 181, 197, 198
AsuHPI GGTGA 2 cut(s) 182, 666
AvaI CYCGRG 1 cut(s) 196
AvrII CCTAGG 1 cut(s) 677
BanII GRGCYC 1 cut(s) 740
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 177, 529, 538
BccI CCATC 2 cut(s) 161, 281
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 1 cut(s) 150
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 3 cut(s) 181, 197, 198
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 2 cut(s) 678, 768
BfmI CTRYAG 2 cut(s) 408, 741
BfoI RGCGCY 1 cut(s) 526
BfuAI ACCTGC 1 cut(s) 63
BfuI GTATCC 1 cut(s) 150
BisI GCNGC 4 cut(s) 191, 540, 543, 552
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 4 cut(s) 192, 541, 544, 553
Bme1390I CCNGG 4 cut(s) 126, 181, 197, 198
BmeT110I CYCGRG 1 cut(s) 196
BmrFI CCNGG 4 cut(s) 126, 181, 197, 198
BmsI GCATC 4 cut(s) 286, 367, 445, 563
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 3 cut(s) 181, 197, 198
BsaHI GRCGYC 2 cut(s) 37, 537
BsaJI CCNNGG 6 cut(s) 179, 195, 196, 614, 677, 698
BsaWI WCCGGW 1 cut(s) 631
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 201, 631
Bse1I ACTGG 2 cut(s) 215, 483
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 6 cut(s) 179, 195, 196, 614, 677, 698
BseGI GGATG 2 cut(s) 296, 711
BseLI CCNNNNNNNGG 3 cut(s) 111, 201, 631
BseMII CTCAG 3 cut(s) 71, 465, 776
BseNI ACTGG 2 cut(s) 215, 483
BseRI GAGGAG 1 cut(s) 14
BseXI GCAGC 3 cut(s) 177, 529, 538
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 3 cut(s) 181, 197, 632
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 111, 201, 631
BsmAI GTCTC 1 cut(s) 507
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 59, 740
Bsp143I GATC 3 cut(s) 346, 445, 585
Bsp19I CCATGG 1 cut(s) 614
BspACI CCGC 2 cut(s) 540, 703
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 3 cut(s) 72, 464, 775
BspFNI CGCG 1 cut(s) 321
BspHI TCATGA 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 341
BsrI ACTGG 2 cut(s) 215, 483
BssECI CCNNGG 6 cut(s) 179, 195, 196, 614, 677, 698
BssMI GATC 3 cut(s) 346, 445, 585
BssNI GRCGYC 2 cut(s) 37, 537
BssT1I CCWWGG 3 cut(s) 614, 677, 698
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 501, 655
Bst6I CTCTTC 1 cut(s) 676
BstACI GRCGYC 2 cut(s) 37, 537
BstAPI GCANNNNNTGC 2 cut(s) 551, 560
BstC8I GCNNGC 3 cut(s) 474, 640, 663
BstDEI CTNAG 4 cut(s) 80, 451, 572, 762
BstDSI CCRYGG 1 cut(s) 614
BstF5I GGATG 2 cut(s) 296, 711
BstFNI CGCG 1 cut(s) 321
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 2 cut(s) 323, 525
BstKTI GATC 3 cut(s) 349, 448, 588
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 3 cut(s) 346, 445, 585
BstMWI GCNNNNNNNGC 6 cut(s) 190, 548, 551, 560, 709, 718
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 4 cut(s) 124, 179, 195, 196
BstSFI CTRYAG 2 cut(s) 408, 741
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 3 cut(s) 177, 529, 538
BstXI CCANNNNNNTGG 1 cut(s) 287
BsuI GTATCC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 614
BtsCI GGATG 2 cut(s) 296, 711
BtsIMutI CAGTG 3 cut(s) 77, 208, 490
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 474, 640, 663
CciI TCATGA 1 cut(s) 274
CfoI GCGC 2 cut(s) 323, 525
Cfr9I CCCGGG 1 cut(s) 196
CseI GACGC 2 cut(s) 26, 545
Csp6I GTAC 1 cut(s) 715
CspCI CAANNNNNGTGG 2 cut(s) 706, 741
CviAII CATG 6 cut(s) 68, 164, 275, 281, 443, 615
CviQI GTAC 1 cut(s) 715
DdeI CTNAG 4 cut(s) 80, 451, 572, 762
DpnI GATC 3 cut(s) 348, 447, 587
DpnII GATC 3 cut(s) 346, 445, 585
DraIII CACNNNGTG 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 676
EarI CTCTTC 1 cut(s) 676
EciI GGCGGA 1 cut(s) 718
Eco130I CCWWGG 3 cut(s) 614, 677, 698
Eco24I GRGCYC 1 cut(s) 740
Eco47III AGCGCT 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 3 cut(s) 614, 677, 698
EcoT38I GRGCYC 1 cut(s) 740
ErhI CCWWGG 3 cut(s) 614, 677, 698
FaeI CATG 6 cut(s) 71, 167, 278, 284, 446, 618
FaqI GGGAC 1 cut(s) 24
FatI CATG 6 cut(s) 67, 163, 274, 280, 442, 614
FbaI TGATCA 1 cut(s) 445
Fnu4HI GCNGC 4 cut(s) 191, 540, 543, 552
FokI GGATG 2 cut(s) 303, 718
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 4 cut(s) 191, 540, 543, 552
FspBI CTAG 2 cut(s) 678, 768
GlaI GCGC 2 cut(s) 322, 524
GluI GCNGC 4 cut(s) 191, 540, 543, 552
HaeII RGCGCY 1 cut(s) 526
HaeIII GGCC 1 cut(s) 184
HapII CCGG 3 cut(s) 181, 197, 632
HgaI GACGC 2 cut(s) 26, 545
HhaI GCGC 2 cut(s) 323, 525
Hin1I GRCGYC 2 cut(s) 37, 537
Hin1II CATG 6 cut(s) 71, 167, 278, 284, 446, 618
Hin6I GCGC 2 cut(s) 321, 523
HinP1I GCGC 2 cut(s) 321, 523
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 3 cut(s) 227, 479, 493
HpaII CCGG 3 cut(s) 181, 197, 632
HphI GGTGA 2 cut(s) 182, 666
Hpy166II GTNNAC 2 cut(s) 328, 752
Hpy188I TCNGA 4 cut(s) 376, 403, 454, 462
Hpy188III TCNNGA 6 cut(s) 224, 248, 275, 350, 533, 648
Hpy8I GTNNAC 2 cut(s) 328, 752
Hpy99I CGWCG 2 cut(s) 158, 362
HpyAV CCTTC 2 cut(s) 379, 421
HpyCH4III ACNGT 2 cut(s) 501, 655
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 17, 545, 554
HpyF10VI GCNNNNNNNGC 6 cut(s) 190, 548, 551, 560, 709, 718
HpyF3I CTNAG 4 cut(s) 80, 451, 572, 762
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 2 cut(s) 37, 537
Hsp92II CATG 6 cut(s) 71, 167, 278, 284, 446, 618
HspAI GCGC 2 cut(s) 321, 523
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 3 cut(s) 346, 445, 585
LmnI GCTCC 2 cut(s) 54, 127
Lsp1109I GCAGC 3 cut(s) 177, 529, 538
LweI GCATC 4 cut(s) 286, 367, 445, 563
MaeI CTAG 2 cut(s) 678, 768
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 75, 170
MalI GATC 3 cut(s) 348, 447, 587
MboI GATC 3 cut(s) 346, 445, 585
MboII GAAGA 4 cut(s) 104, 521, 663, 685
MhlI GDGCHC 2 cut(s) 59, 740
MluCI AATT 3 cut(s) 334, 589, 619
MlyI GAGTC 1 cut(s) 488
MnlI CCTC 6 cut(s) 35, 231, 282, 397, 628, 771
MroXI GAANNNNTTC 1 cut(s) 99
MslI CAYNNNNRTG 5 cut(s) 168, 279, 285, 386, 453
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 3 cut(s) 181, 197, 632
MspR9I CCNGG 4 cut(s) 126, 181, 197, 198
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 6 cut(s) 190, 548, 551, 560, 709, 718
NciI CCSGG 3 cut(s) 181, 197, 198
NcoI CCATGG 1 cut(s) 614
NdeII GATC 3 cut(s) 346, 445, 585
NlaIII CATG 6 cut(s) 71, 167, 278, 284, 446, 618
NmuCI GTSAC 2 cut(s) 75, 170
PagI TCATGA 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 227, 493
PkrI GCNGC 4 cut(s) 192, 541, 544, 553
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
Psp1406I AACGTT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
RsaI GTAC 1 cut(s) 716
RsaNI GTAC 1 cut(s) 715
RseI CAYNNNNRTG 5 cut(s) 168, 279, 285, 386, 453
SatI GCNGC 4 cut(s) 191, 540, 543, 552
Sau3AI GATC 3 cut(s) 346, 445, 585
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 4 cut(s) 126, 181, 197, 198
SduI GDGCHC 2 cut(s) 59, 740
SfaNI GCATC 4 cut(s) 286, 367, 445, 563
SfcI CTRYAG 2 cut(s) 408, 741
SmaI CCCGGG 1 cut(s) 198
SmiMI CAYNNNNRTG 5 cut(s) 168, 279, 285, 386, 453
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 3 cut(s) 334, 589, 619
SsiI CCGC 2 cut(s) 540, 703
SspMI CTAG 2 cut(s) 678, 768
StyD4I CCNGG 4 cut(s) 124, 179, 195, 196
StyI CCWWGG 3 cut(s) 614, 677, 698
TaaI ACNGT 2 cut(s) 501, 655
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 357, 519
TasI AATT 3 cut(s) 334, 589, 619
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 2 cut(s) 227, 493
TscAI CASTG 3 cut(s) 84, 215, 490
TseFI GTSAC 2 cut(s) 75, 170
TseI GCWGC 3 cut(s) 190, 542, 551
Tsp45I GTSAC 2 cut(s) 75, 170
TspDTI ATGAA 3 cut(s) 378, 506, 722
TspMI CCCGGG 1 cut(s) 196
TspRI CASTG 3 cut(s) 84, 215, 490
XmaI CCCGGG 1 cut(s) 196
XmaJI CCTAGG 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 2 cut(s) 678, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.