Rw3G009640

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0015801
Physical Location & Seq
Reverse (-)
9207500 .. 9208293
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G009640.1

Sequence Viewer

Length: 696 bp
ATGCTGAACTTCAATGCACCACTCCTCTCAACAAGGCGTCCCAGAAACTCAAGGAGCACAAGATTACATGGCAGGTCACTGAGTGCGAGTGAAGAAAGAGTTCCCTTCTCGTGGGAACAAGCTCCTGGCAAGTCCAAGTATCCAAACACAAGCGACGATAACCATGATGACACTCATGACCATGATGATGGATGTGATGCTGATGTTGATGATGATGTTCGCGCTGTTGACTACAATTATGTTGATGATCCTGATTTCGACGATGAAGCCTTCTCCGATGCCATAGATGTGTTCTCATTGTCAGAGGCTATAGACATTGTGGAAAAGAAGGCACAAAGAGAACATGATCACTCAGATGCTCTGAAGTTGAAGCTCGCAGAGTCCAGTGAGATGAATCAACTGTCTCCAAACTACATAATCGAGCGCTTTCTTCCAGACGCCGCTGCATTGGCTGCATCATCTGCTATAAATCTAAGTGTATCACAGATCAATTCAAACCAGAAACTTTGTTATCCATGGAATTACCCTGAACCGGAGGCTTGCGTGTCAAGAACAGTTGGGCAAGCTCACTCTTCACCTAGGGGTTGTGGTTTCTTCCCTTGGCGGATGAAGCAGTACAAGCTCTGTGGTATAAAGAGCCCGGTAGTGTGTTCACAACAACCTCAGTCTAGTGTAAAACACAAAAAACATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

231

Amino Acids

25.94

Weight (kDa)

5.32

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 2 - 155 9.3e-07 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015801)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51760 AT3G51760 AT3G51760 AT3G51760
malus_domestica MD04G1163000.v1.1
prunus_persica Prupe.6G282500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0462281
rosa_multiflora Rmu_co8387589.1_g000001 Rmu_sc0001553.1_g000001
rosa_roxburghii Rroxscaffold_6G00417620
rosa_samantha Rh3AG114200 Rh3BG117300 Rh3CG120100 Rh3DG119100
rosa_wichuraiana Rw3G009640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 441, 604
AclWI GGATC 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 2 cut(s) 37, 438
AdeI CACNNNGTG 1 cut(s) 83
AfaI GTAC 1 cut(s) 617
AfeI AGCGCT 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 111, 532
AgsI TTSAA 3 cut(s) 13, 370, 495
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 4 cut(s) 122, 373, 566, 622
AluI AGCT 4 cut(s) 122, 373, 566, 622
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 1 cut(s) 242
Aor51HI AGCGCT 1 cut(s) 425
ApeKI GCWGC 2 cut(s) 443, 452
Asp700I GAANNNNTTC 1 cut(s) 99
AspA2I CCTAGG 1 cut(s) 578
AspLEI GCGC 2 cut(s) 224, 426
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 1 cut(s) 567
AvrII CCTAGG 1 cut(s) 578
BanII GRGCYC 1 cut(s) 641
BauI CACGAG 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 430, 439
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 1 cut(s) 150
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 2 cut(s) 579, 669
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 427
BfuAI ACCTGC 1 cut(s) 63
BfuI GTATCC 1 cut(s) 150
BisI GCNGC 3 cut(s) 441, 444, 453
BlnI CCTAGG 1 cut(s) 578
BlsI GCNGC 3 cut(s) 442, 445, 454
Bme1390I CCNGG 2 cut(s) 126, 641
BmrFI CCNGG 2 cut(s) 126, 641
BmsI GCATC 4 cut(s) 187, 268, 346, 464
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 641
BsaHI GRCGYC 2 cut(s) 37, 438
BsaJI CCNNGG 3 cut(s) 515, 578, 599
BsaWI WCCGGW 1 cut(s) 532
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 532
Bse1I ACTGG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 515, 578, 599
BseGI GGATG 2 cut(s) 197, 612
BseLI CCNNNNNNNGG 2 cut(s) 111, 532
BseMII CTCAG 3 cut(s) 71, 366, 677
BseNI ACTGG 1 cut(s) 384
BseRI GAGGAG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 430, 439
Bsh1236I CGCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 533, 641
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 111, 532
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 24
Bsp1286I GDGCHC 2 cut(s) 59, 641
Bsp143I GATC 3 cut(s) 247, 346, 486
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 2 cut(s) 441, 604
BspCNI CTCAG 3 cut(s) 72, 365, 676
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 3 cut(s) 515, 578, 599
BssMI GATC 3 cut(s) 247, 346, 486
BssNI GRCGYC 2 cut(s) 37, 438
BssSI CACGAG 1 cut(s) 109
BssT1I CCWWGG 3 cut(s) 515, 578, 599
Bst2BI CACGAG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 402, 556
Bst6I CTCTTC 1 cut(s) 577
BstACI GRCGYC 2 cut(s) 37, 438
BstAPI GCANNNNNTGC 2 cut(s) 452, 461
BstC8I GCNNGC 3 cut(s) 375, 541, 564
BstDEI CTNAG 4 cut(s) 80, 352, 473, 663
BstDSI CCRYGG 1 cut(s) 515
BstF5I GGATG 2 cut(s) 197, 612
BstFNI CGCG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 2 cut(s) 224, 426
BstKTI GATC 3 cut(s) 250, 349, 489
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 3 cut(s) 247, 346, 486
BstMWI GCNNNNNNNGC 5 cut(s) 449, 452, 461, 610, 619
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 2 cut(s) 124, 639
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 430, 439
BstXI CCANNNNNNTGG 1 cut(s) 188
BsuI GTATCC 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 515
BtsCI GGATG 2 cut(s) 197, 612
BtsIMutI CAGTG 2 cut(s) 77, 391
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 375, 541, 564
CciI TCATGA 1 cut(s) 175
CfoI GCGC 2 cut(s) 224, 426
CseI GACGC 2 cut(s) 26, 446
Csp6I GTAC 1 cut(s) 616
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CviAII CATG 6 cut(s) 68, 164, 176, 182, 344, 516
CviJI RGCY 9 cut(s) 122, 269, 308, 373, 452, 539, 566, 622, 639
CviKI_1 RGCY 9 cut(s) 122, 269, 308, 373, 452, 539, 566, 622, 639
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 4 cut(s) 80, 352, 473, 663
DpnI GATC 3 cut(s) 249, 348, 488
DpnII GATC 3 cut(s) 247, 346, 486
DraIII CACNNNGTG 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 577
EarI CTCTTC 1 cut(s) 577
EciI GGCGGA 1 cut(s) 619
Eco130I CCWWGG 3 cut(s) 515, 578, 599
Eco24I GRGCYC 1 cut(s) 641
Eco47III AGCGCT 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 3 cut(s) 515, 578, 599
EcoT38I GRGCYC 1 cut(s) 641
ErhI CCWWGG 3 cut(s) 515, 578, 599
FaeI CATG 6 cut(s) 71, 167, 179, 185, 347, 519
FaqI GGGAC 1 cut(s) 24
FatI CATG 6 cut(s) 67, 163, 175, 181, 343, 515
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 3 cut(s) 441, 444, 453
FokI GGATG 2 cut(s) 204, 619
FriOI GRGCYC 1 cut(s) 641
Fsp4HI GCNGC 3 cut(s) 441, 444, 453
FspBI CTAG 2 cut(s) 579, 669
GlaI GCGC 2 cut(s) 223, 425
GluI GCNGC 3 cut(s) 441, 444, 453
HaeII RGCGCY 1 cut(s) 427
HapII CCGG 2 cut(s) 533, 641
HgaI GACGC 2 cut(s) 26, 446
HhaI GCGC 2 cut(s) 224, 426
Hin1I GRCGYC 2 cut(s) 37, 438
Hin1II CATG 6 cut(s) 71, 167, 179, 185, 347, 519
Hin6I GCGC 2 cut(s) 222, 424
HinP1I GCGC 2 cut(s) 222, 424
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 380, 394
HpaII CCGG 2 cut(s) 533, 641
HphI GGTGA 1 cut(s) 567
Hpy166II GTNNAC 2 cut(s) 229, 653
Hpy188I TCNGA 4 cut(s) 277, 304, 355, 363
Hpy188III TCNNGA 4 cut(s) 176, 251, 434, 549
Hpy8I GTNNAC 2 cut(s) 229, 653
Hpy99I CGWCG 2 cut(s) 158, 263
HpyAV CCTTC 3 cut(s) 115, 280, 322
HpyCH4III ACNGT 2 cut(s) 402, 556
HpyCH4V TGCA 3 cut(s) 17, 446, 455
HpyF10VI GCNNNNNNNGC 5 cut(s) 449, 452, 461, 610, 619
HpyF3I CTNAG 4 cut(s) 80, 352, 473, 663
Hsp92I GRCGYC 2 cut(s) 37, 438
Hsp92II CATG 6 cut(s) 71, 167, 179, 185, 347, 519
HspAI GCGC 2 cut(s) 222, 424
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 247, 346, 486
LmnI GCTCC 2 cut(s) 54, 127
Lsp1109I GCAGC 2 cut(s) 430, 439
LweI GCATC 4 cut(s) 187, 268, 346, 464
MaeI CTAG 2 cut(s) 579, 669
MaeIII GTNAC 1 cut(s) 75
MalI GATC 3 cut(s) 249, 348, 488
MboI GATC 3 cut(s) 247, 346, 486
MboII GAAGA 4 cut(s) 104, 422, 564, 586
MhlI GDGCHC 2 cut(s) 59, 641
MluCI AATT 3 cut(s) 235, 490, 520
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 4 cut(s) 35, 298, 529, 672
MroXI GAANNNNTTC 1 cut(s) 99
MslI CAYNNNNRTG 4 cut(s) 180, 186, 287, 354
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 533, 641
MspR9I CCNGG 2 cut(s) 126, 641
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 5 cut(s) 449, 452, 461, 610, 619
NciI CCSGG 1 cut(s) 641
NcoI CCATGG 1 cut(s) 515
NdeII GATC 3 cut(s) 247, 346, 486
NlaIII CATG 6 cut(s) 71, 167, 179, 185, 347, 519
NmuCI GTSAC 1 cut(s) 75
PagI TCATGA 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 3 cut(s) 442, 445, 454
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 4 cut(s) 180, 186, 287, 354
SatI GCNGC 3 cut(s) 441, 444, 453
Sau3AI GATC 3 cut(s) 247, 346, 486
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 126, 641
SduI GDGCHC 2 cut(s) 59, 641
SetI ASST 7 cut(s) 77, 124, 375, 568, 580, 624, 664
SfaNI GCATC 4 cut(s) 187, 268, 346, 464
SfcI CTRYAG 1 cut(s) 309
SmiMI CAYNNNNRTG 4 cut(s) 180, 186, 287, 354
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 3 cut(s) 235, 490, 520
SsiI CCGC 2 cut(s) 441, 604
SspMI CTAG 2 cut(s) 579, 669
StyD4I CCNGG 2 cut(s) 124, 639
StyI CCWWGG 3 cut(s) 515, 578, 599
TaaI ACNGT 2 cut(s) 402, 556
TaqI TCGA 2 cut(s) 258, 420
TasI AATT 3 cut(s) 235, 490, 520
TatI WGTACW 1 cut(s) 615
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 1 cut(s) 394
TscAI CASTG 2 cut(s) 84, 391
TseFI GTSAC 1 cut(s) 75
TseI GCWGC 2 cut(s) 443, 452
Tsp45I GTSAC 1 cut(s) 75
TspDTI ATGAA 3 cut(s) 279, 407, 623
TspRI CASTG 2 cut(s) 84, 391
XmaJI CCTAGG 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 2 cut(s) 579, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.