Rh3DG119100

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015801
Physical Location & Seq
Reverse (-)
9991409 .. 10005572
14164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG119100.1

Sequence Viewer

Length: 891 bp
ATGCTCTCAGAAGTAAGATTTGAAGATGCTTTAGAAGCAAAATGTCCTAGAATGCTGAACTTCAATGCACCACTCCTCTCAACAAGGCGTCCCAGAAACTCAAGGAGCACAAGATTACATGGCAGGTCACTGAGTGCGAGTGAAGAAAGAGTTCCCTTTTCGTGGGAACAAGCTCCTGGCAAGTCCAAGTATCCAAACACAAGCGACGATAACCATGATGGTGACACACCCAGGCCAAAGCTGCCCCCGGGCTGGTGGCACTGGCACAAGCCTCTTGAATCAACTAACGTTGTTGTTCTGGATAAAGAGAATGAGCAGACACTTCATGACCATGATGATGGATGTGATGCTGATGTTGATGATGATGTTCGCGCTGTTGACTACAATTATGTTGATGATCCTGATTTCGACGATGAAGCCTTCTCCGATGCCATAGATGTGTTCTCATTGTCAGAGGCTATAGACATTGTGGAAAAGAAGGCACAAAGAGAACATGATCACTCAGATGCTCTGAAGTTGAAGCTCGCAGAGTCCAGTGAGATGAATCAACTGTCTCCAAACTACATAATCGAGCGCTTTCTTCCAGACGCCGCTGCATTGGCTGCATCATCTGCTATAAATCTAAGTGTATCACAGATCAATTCAAACCAGAAACTTTGTTATCCATGGAATTACCCTGAACCGGAGGCTTGCGTGTCAAGAACAGTTGGGCAAGCTCACTCTTCACCTAGGGGTTGTGGTTTCTTCCCTTGGCGGATGAAGCAGTACAAGCTCTGTGGTATAAAGAGCCCTGTAGTGTGTTCACAACAACCTCAGTCTAGTGATTTTGTAAATCGAGCAATTTTGCATGAGAAGAAGGGAGTATTGAGATCTTATACTGGAGTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

296

Amino Acids

33.43

Weight (kDa)

5.24

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 17 - 205 3.3e-09 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015801)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51760 AT3G51760 AT3G51760 AT3G51760
malus_domestica MD04G1163000.v1.1
prunus_persica Prupe.6G282500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0462281
rosa_multiflora Rmu_co8387589.1_g000001 Rmu_sc0001553.1_g000001
rosa_roxburghii Rroxscaffold_6G00417620
rosa_samantha Rh3AG114200 Rh3BG117300 Rh3CG120100 Rh3DG119100
rosa_wichuraiana Rw3G009640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 114
AccII CGCG 1 cut(s) 372
AciI CCGC 2 cut(s) 591, 754
AclI AACGTT 1 cut(s) 288
AclWI GGATC 1 cut(s) 392
AcuI CTGAAG 1 cut(s) 533
AcyI GRCGYC 2 cut(s) 88, 588
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 1 cut(s) 767
AfeI AGCGCT 1 cut(s) 575
AfiI CCNNNNNNNGG 3 cut(s) 162, 252, 682
AgsI TTSAA 5 cut(s) 23, 64, 278, 520, 645
AjnI CCWGG 2 cut(s) 175, 230
AluBI AGCT 5 cut(s) 173, 241, 523, 716, 772
AluI AGCT 5 cut(s) 173, 241, 523, 716, 772
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 247
Aor51HI AGCGCT 1 cut(s) 575
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 241, 593, 602
Asp700I GAANNNNTTC 1 cut(s) 150
AspA2I CCTAGG 1 cut(s) 728
AspLEI GCGC 2 cut(s) 374, 576
AsuC2I CCSGG 2 cut(s) 248, 249
AsuHPI GGTGA 2 cut(s) 233, 717
AvaI CYCGRG 1 cut(s) 247
AvrII CCTAGG 1 cut(s) 728
BanII GRGCYC 1 cut(s) 791
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 3 cut(s) 228, 580, 589
BccI CCATC 2 cut(s) 212, 332
BciT130I CCWGG 2 cut(s) 177, 232
BciVI GTATCC 1 cut(s) 201
BclI TGATCA 1 cut(s) 496
BcnI CCSGG 2 cut(s) 248, 249
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 3 cut(s) 48, 729, 819
BfmI CTRYAG 2 cut(s) 459, 792
BfoI RGCGCY 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 114
BfuI GTATCC 1 cut(s) 201
BglII AGATCT 1 cut(s) 869
BisI GCNGC 4 cut(s) 242, 591, 594, 603
BlnI CCTAGG 1 cut(s) 728
BlsI GCNGC 4 cut(s) 243, 592, 595, 604
Bme1390I CCNGG 4 cut(s) 177, 232, 248, 249
BmeT110I CYCGRG 1 cut(s) 247
BmrFI CCNGG 4 cut(s) 177, 232, 248, 249
BmsI GCATC 5 cut(s) 16, 337, 418, 496, 614
BpuEI CTTGAG 1 cut(s) 85
BpuMI CCSGG 2 cut(s) 248, 249
BsaHI GRCGYC 2 cut(s) 88, 588
BsaJI CCNNGG 6 cut(s) 230, 246, 247, 665, 728, 749
BsaWI WCCGGW 1 cut(s) 682
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 252, 682
Bse1I ACTGG 3 cut(s) 266, 534, 883
BseBI CCWGG 2 cut(s) 177, 232
BseDI CCNNGG 6 cut(s) 230, 246, 247, 665, 728, 749
BseGI GGATG 2 cut(s) 347, 762
BseLI CCNNNNNNNGG 3 cut(s) 162, 252, 682
BseMII CTCAG 4 cut(s) 21, 122, 516, 827
BseNI ACTGG 3 cut(s) 266, 534, 883
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 228, 580, 589
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 2 cut(s) 248, 683
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 3 cut(s) 162, 252, 682
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 1 cut(s) 235
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 110, 791
Bsp143I GATC 4 cut(s) 397, 496, 636, 869
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 2 cut(s) 591, 754
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 4 cut(s) 20, 123, 515, 826
BspFNI CGCG 1 cut(s) 372
BspHI TCATGA 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 114
BspPI GGATC 1 cut(s) 392
BsrI ACTGG 3 cut(s) 266, 534, 883
BssECI CCNNGG 6 cut(s) 230, 246, 247, 665, 728, 749
BssMI GATC 4 cut(s) 397, 496, 636, 869
BssNI GRCGYC 2 cut(s) 88, 588
BssT1I CCWWGG 3 cut(s) 665, 728, 749
Bst2UI CCWGG 2 cut(s) 177, 232
Bst4CI ACNGT 2 cut(s) 552, 706
Bst6I CTCTTC 1 cut(s) 727
BstACI GRCGYC 2 cut(s) 88, 588
BstAPI GCANNNNNTGC 2 cut(s) 602, 611
BstC8I GCNNGC 3 cut(s) 525, 691, 714
BstDEI CTNAG 5 cut(s) 7, 131, 502, 623, 813
BstDSI CCRYGG 1 cut(s) 665
BstF5I GGATG 2 cut(s) 347, 762
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 2 cut(s) 374, 576
BstKTI GATC 4 cut(s) 400, 499, 639, 872
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 4 cut(s) 397, 496, 636, 869
BstMWI GCNNNNNNNGC 7 cut(s) 35, 241, 599, 602, 611, 760, 769
BstNI CCWGG 2 cut(s) 177, 232
BstSCI CCNGG 4 cut(s) 175, 230, 246, 247
BstSFI CTRYAG 2 cut(s) 459, 792
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 3 cut(s) 228, 580, 589
BstX2I RGATCY 1 cut(s) 869
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 1 cut(s) 869
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 2 cut(s) 347, 762
BtsIMutI CAGTG 3 cut(s) 128, 259, 541
BveI ACCTGC 1 cut(s) 114
Cac8I GCNNGC 3 cut(s) 525, 691, 714
CciI TCATGA 1 cut(s) 325
CfoI GCGC 2 cut(s) 374, 576
Cfr9I CCCGGG 1 cut(s) 247
CseI GACGC 2 cut(s) 77, 596
Csp6I GTAC 1 cut(s) 766
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 7 cut(s) 119, 215, 326, 332, 494, 666, 848
CviQI GTAC 1 cut(s) 766
DdeI CTNAG 5 cut(s) 7, 131, 502, 623, 813
DpnI GATC 4 cut(s) 399, 498, 638, 871
DpnII GATC 4 cut(s) 397, 496, 636, 869
DraIII CACNNNGTG 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 727
EarI CTCTTC 1 cut(s) 727
EciI GGCGGA 1 cut(s) 769
Eco130I CCWWGG 3 cut(s) 665, 728, 749
Eco24I GRGCYC 1 cut(s) 791
Eco47III AGCGCT 1 cut(s) 575
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 175, 230
EcoT14I CCWWGG 3 cut(s) 665, 728, 749
EcoT38I GRGCYC 1 cut(s) 791
ErhI CCWWGG 3 cut(s) 665, 728, 749
FaeI CATG 7 cut(s) 122, 218, 329, 335, 497, 669, 851
FaqI GGGAC 1 cut(s) 75
FatI CATG 7 cut(s) 118, 214, 325, 331, 493, 665, 847
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 4 cut(s) 242, 591, 594, 603
FokI GGATG 2 cut(s) 354, 769
FriOI GRGCYC 1 cut(s) 791
Fsp4HI GCNGC 4 cut(s) 242, 591, 594, 603
FspBI CTAG 3 cut(s) 48, 729, 819
GlaI GCGC 2 cut(s) 373, 575
GluI GCNGC 4 cut(s) 242, 591, 594, 603
HaeII RGCGCY 1 cut(s) 577
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 248, 683
HgaI GACGC 2 cut(s) 77, 596
HhaI GCGC 2 cut(s) 374, 576
Hin1I GRCGYC 2 cut(s) 88, 588
Hin1II CATG 7 cut(s) 122, 218, 329, 335, 497, 669, 851
Hin6I GCGC 2 cut(s) 372, 574
HinP1I GCGC 2 cut(s) 372, 574
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 3 cut(s) 278, 530, 544
HpaII CCGG 2 cut(s) 248, 683
HphI GGTGA 2 cut(s) 233, 717
Hpy166II GTNNAC 2 cut(s) 379, 803
Hpy188I TCNGA 5 cut(s) 10, 427, 454, 505, 513
Hpy188III TCNNGA 6 cut(s) 275, 299, 326, 401, 584, 699
Hpy8I GTNNAC 2 cut(s) 379, 803
Hpy99I CGWCG 2 cut(s) 209, 413
HpyAV CCTTC 3 cut(s) 430, 472, 850
HpyCH4III ACNGT 2 cut(s) 552, 706
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 4 cut(s) 68, 596, 605, 847
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 241, 599, 602, 611, 760, 769
HpyF3I CTNAG 5 cut(s) 7, 131, 502, 623, 813
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 2 cut(s) 88, 588
Hsp92II CATG 7 cut(s) 122, 218, 329, 335, 497, 669, 851
HspAI GCGC 2 cut(s) 372, 574
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 4 cut(s) 397, 496, 636, 869
LmnI GCTCC 2 cut(s) 105, 178
Lsp1109I GCAGC 3 cut(s) 228, 580, 589
LweI GCATC 5 cut(s) 16, 337, 418, 496, 614
MaeI CTAG 3 cut(s) 48, 729, 819
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 126, 221
MalI GATC 4 cut(s) 399, 498, 638, 871
MboI GATC 4 cut(s) 397, 496, 636, 869
MboII GAAGA 6 cut(s) 35, 155, 572, 714, 736, 865
MflI RGATCY 1 cut(s) 869
MhlI GDGCHC 2 cut(s) 110, 791
MluCI AATT 4 cut(s) 385, 640, 670, 840
MlyI GAGTC 1 cut(s) 539
MnlI CCTC 5 cut(s) 86, 282, 448, 679, 822
MroXI GAANNNNTTC 1 cut(s) 150
MslI CAYNNNNRTG 5 cut(s) 219, 330, 336, 437, 504
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 2 cut(s) 248, 683
MspR9I CCNGG 4 cut(s) 177, 232, 248, 249
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 2 cut(s) 177, 232
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 7 cut(s) 35, 241, 599, 602, 611, 760, 769
NciI CCSGG 2 cut(s) 248, 249
NcoI CCATGG 1 cut(s) 665
NdeII GATC 4 cut(s) 397, 496, 636, 869
NlaIII CATG 7 cut(s) 122, 218, 329, 335, 497, 669, 851
NmuCI GTSAC 2 cut(s) 126, 221
PagI TCATGA 1 cut(s) 325
PctI GAATGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 278, 544
PkrI GCNGC 4 cut(s) 243, 592, 595, 604
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
Psp1406I AACGTT 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 175, 230
PspGI CCWGG 2 cut(s) 175, 230
PsuI RGATCY 1 cut(s) 869
RsaI GTAC 1 cut(s) 767
RsaNI GTAC 1 cut(s) 766
RseI CAYNNNNRTG 5 cut(s) 219, 330, 336, 437, 504
SatI GCNGC 4 cut(s) 242, 591, 594, 603
Sau3AI GATC 4 cut(s) 397, 496, 636, 869
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 4 cut(s) 177, 232, 248, 249
SduI GDGCHC 2 cut(s) 110, 791
SetI ASST 9 cut(s) 128, 175, 243, 291, 525, 718, 730, 774, 814
SfaNI GCATC 5 cut(s) 16, 337, 418, 496, 614
SfcI CTRYAG 2 cut(s) 459, 792
SmaI CCCGGG 1 cut(s) 249
SmiMI CAYNNNNRTG 5 cut(s) 219, 330, 336, 437, 504
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 4 cut(s) 385, 640, 670, 840
SsiI CCGC 2 cut(s) 591, 754
SspMI CTAG 3 cut(s) 48, 729, 819
StyD4I CCNGG 4 cut(s) 175, 230, 246, 247
StyI CCWWGG 3 cut(s) 665, 728, 749
TaaI ACNGT 2 cut(s) 552, 706
TaiI ACGT 1 cut(s) 291
TaqI TCGA 3 cut(s) 408, 570, 835
TasI AATT 4 cut(s) 385, 640, 670, 840
TatI WGTACW 1 cut(s) 765
TauI GCSGC 1 cut(s) 593
TfiI GAWTC 2 cut(s) 278, 544
TscAI CASTG 3 cut(s) 135, 266, 541
TseFI GTSAC 2 cut(s) 126, 221
TseI GCWGC 3 cut(s) 241, 593, 602
Tsp45I GTSAC 2 cut(s) 126, 221
TspDTI ATGAA 4 cut(s) 314, 429, 557, 773
TspMI CCCGGG 1 cut(s) 247
TspRI CASTG 3 cut(s) 135, 266, 541
XmaI CCCGGG 1 cut(s) 247
XmaJI CCTAGG 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 3 cut(s) 48, 729, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.