Rroxscaffold_6G00417620

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015801
Physical Location & Seq
Forward (+)
39306628 .. 39307575
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417620.1

Sequence Viewer

Length: 948 bp
ATGAGGTACCCATCAATTCCAACCGTCATGCCATTATTTCACTCAACTGCCTTCTACTATTTCCTCCTGATCACTCAACTTAAGCTTCAGTTCTTTCAATATATGCTCTCAGAAGTAAGATTTGAAGATGCTTTAGAAGCAAAATGTCCTAGAATGCTGAACTTCAATGCACCACTCCTCTCAACAAGGCGTCCCAGAAACTCAAGGAGCACAAGATTACATGGCAGGTCACTGAGTGCGAGTGAAGAAAGAGTTCCCTTTTCGTGGGAACAAGCTCCTGGCAAGTCCAAGTATCCACACACAAGCGACGATAACCATGATGGTGACACGCCCCGGCCAAAGCTGCCCCCAGGCTGGTGGCACTGGCACAAGCCTCTTGAATCAACTAACGTTGTTGTTCTGGACAAAGAGAATGAGCAGACACTTCATGACCATGATGATGGATGTGATGCTGATGTTGATGATGATGTTCGCGCTGTTGACTACAATTACGTTGATGATCCTGATTTCGACGATGAAGCCTTCTCCGATGCCATAGATGTGTTCTCATTGTCAGAGGCTATAGACATTGTGGAAAAGAAAGCACAAAGAGAACATGATCACTCAGATGCTCTGAAGTTGAAGCTCGCAGAGTCCAGTGAGATGAATCAACTGTCTCCAAACTACATAATCGAGCGCTTTCTTCCAGACGCTGCTGCATTGGCTGCATCATCTGCTATAAATCTAAGTGTATCACAGATCAATTCAAACCAGAAACTTTGTTATCCATGGAAATACCCTGAACCGGAGGCTTGCGTGTCAAGAACAGTTGGGCAAGCTCACTCTTCACCTAGGGGTTGTGGTTTCTTCCCTTGGCGGATGAAGCAGTACAAGCTCTGTGGTATAAAGAGCCCTGTAGTGTGTTCACAACAACCTCAGTCCAGTGTAAAACACAAAAAACATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

315

Amino Acids

36.02

Weight (kDa)

5.9

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 51 - 239 2.7e-09 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015801)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51760 AT3G51760 AT3G51760 AT3G51760
malus_domestica MD04G1163000.v1.1
prunus_persica Prupe.6G282500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0462281
rosa_multiflora Rmu_co8387589.1_g000001 Rmu_sc0001553.1_g000001
rosa_roxburghii Rroxscaffold_6G00417620
rosa_samantha Rh3AG114200 Rh3BG117300 Rh3CG120100 Rh3DG119100
rosa_wichuraiana Rw3G009640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 216
Acc65I GGTACC 1 cut(s) 6
AccB1I GGYRCC 1 cut(s) 6
AccII CGCG 1 cut(s) 474
AciI CCGC 1 cut(s) 856
AclI AACGTT 1 cut(s) 390
AclWI GGATC 1 cut(s) 494
AcoI YGGCCR 1 cut(s) 335
AcuI CTGAAG 2 cut(s) 71, 635
AcyI GRCGYC 1 cut(s) 190
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 2 cut(s) 8, 869
AfeI AGCGCT 1 cut(s) 677
AfiI CCNNNNNNNGG 3 cut(s) 264, 354, 784
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 6 cut(s) 98, 125, 166, 380, 622, 747
AjnI CCWGG 2 cut(s) 277, 349
AluBI AGCT 6 cut(s) 85, 275, 343, 625, 818, 874
AluI AGCT 6 cut(s) 85, 275, 343, 625, 818, 874
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 1 cut(s) 494
AlwNI CAGNNNCTG 1 cut(s) 692
Aor51HI AGCGCT 1 cut(s) 677
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 4 cut(s) 343, 692, 695, 704
Asp700I GAANNNNTTC 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 6
AspA2I CCTAGG 1 cut(s) 830
AspLEI GCGC 2 cut(s) 476, 678
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 335, 819
AvrII CCTAGG 1 cut(s) 830
BanI GGYRCC 1 cut(s) 6
BanII GRGCYC 1 cut(s) 893
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 4 cut(s) 330, 679, 682, 691
BccI CCATC 3 cut(s) 19, 314, 434
BciT130I CCWGG 2 cut(s) 279, 351
BciVI GTATCC 1 cut(s) 303
BclI TGATCA 2 cut(s) 69, 598
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 660
BfaI CTAG 2 cut(s) 150, 831
BfmI CTRYAG 2 cut(s) 561, 894
BfoI RGCGCY 1 cut(s) 679
BfrI CTTAAG 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 216
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 4 cut(s) 344, 693, 696, 705
BlnI CCTAGG 1 cut(s) 830
BlsI GCNGC 4 cut(s) 345, 694, 697, 706
Bme1390I CCNGG 3 cut(s) 279, 334, 351
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 3 cut(s) 279, 334, 351
BmsI GCATC 5 cut(s) 118, 439, 520, 598, 716
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 190
BsaJI CCNNGG 5 cut(s) 332, 349, 767, 830, 851
BsaWI WCCGGW 1 cut(s) 784
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 354, 784
Bse1I ACTGG 3 cut(s) 368, 636, 921
BseBI CCWGG 2 cut(s) 279, 351
BseDI CCNNGG 5 cut(s) 332, 349, 767, 830, 851
BseGI GGATG 2 cut(s) 449, 864
BseLI CCNNNNNNNGG 3 cut(s) 264, 354, 784
BseMII CTCAG 4 cut(s) 123, 224, 618, 929
BseNI ACTGG 3 cut(s) 368, 636, 921
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 4 cut(s) 330, 679, 682, 691
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 1 cut(s) 337
BshNI GGYRCC 1 cut(s) 6
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 2 cut(s) 334, 785
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 3 cut(s) 264, 354, 784
BsmAI GTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 2 cut(s) 212, 893
Bsp143I GATC 4 cut(s) 69, 499, 598, 738
Bsp19I CCATGG 1 cut(s) 767
BspACI CCGC 1 cut(s) 856
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 4 cut(s) 122, 225, 617, 928
BspFNI CGCG 1 cut(s) 474
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 8
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 6
BspTI CTTAAG 1 cut(s) 80
BsrI ACTGG 3 cut(s) 368, 636, 921
BssECI CCNNGG 5 cut(s) 332, 349, 767, 830, 851
BssMI GATC 4 cut(s) 69, 499, 598, 738
BssNI GRCGYC 1 cut(s) 190
BssT1I CCWWGG 3 cut(s) 767, 830, 851
Bst2UI CCWGG 2 cut(s) 279, 351
Bst4CI ACNGT 3 cut(s) 25, 654, 808
Bst6I CTCTTC 1 cut(s) 829
BstACI GRCGYC 1 cut(s) 190
BstAFI CTTAAG 1 cut(s) 80
BstAPI GCANNNNNTGC 2 cut(s) 704, 713
BstC8I GCNNGC 3 cut(s) 627, 793, 816
BstDEI CTNAG 5 cut(s) 109, 233, 604, 725, 915
BstDSI CCRYGG 1 cut(s) 767
BstF5I GGATG 2 cut(s) 449, 864
BstFNI CGCG 1 cut(s) 474
BstH2I RGCGCY 1 cut(s) 679
BstHHI GCGC 2 cut(s) 476, 678
BstKTI GATC 4 cut(s) 72, 502, 601, 741
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 4 cut(s) 69, 499, 598, 738
BstMWI GCNNNNNNNGC 7 cut(s) 137, 343, 701, 704, 713, 862, 871
BstNI CCWGG 2 cut(s) 279, 351
BstSCI CCNGG 3 cut(s) 277, 332, 349
BstSFI CTRYAG 2 cut(s) 561, 894
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 4 cut(s) 330, 679, 682, 691
BstXI CCANNNNNNTGG 2 cut(s) 357, 440
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 767
BtsCI GGATG 2 cut(s) 449, 864
BtsIMutI CAGTG 4 cut(s) 230, 361, 643, 928
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 627, 793, 816
CaiI CAGNNNCTG 1 cut(s) 692
CciI TCATGA 1 cut(s) 427
CfoI GCGC 2 cut(s) 476, 678
CseI GACGC 2 cut(s) 179, 698
Csp6I GTAC 2 cut(s) 7, 868
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviAII CATG 7 cut(s) 28, 221, 317, 428, 434, 596, 768
CviQI GTAC 2 cut(s) 7, 868
DdeI CTNAG 5 cut(s) 109, 233, 604, 725, 915
DpnI GATC 4 cut(s) 71, 501, 600, 740
DpnII GATC 4 cut(s) 69, 499, 598, 738
DraIII CACNNNGTG 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 829
EarI CTCTTC 1 cut(s) 829
EciI GGCGGA 1 cut(s) 871
Eco130I CCWWGG 3 cut(s) 767, 830, 851
Eco24I GRGCYC 1 cut(s) 893
Eco47III AGCGCT 1 cut(s) 677
Eco57I CTGAAG 2 cut(s) 71, 635
EcoRII CCWGG 2 cut(s) 277, 349
EcoT14I CCWWGG 3 cut(s) 767, 830, 851
EcoT38I GRGCYC 1 cut(s) 893
ErhI CCWWGG 3 cut(s) 767, 830, 851
FaeI CATG 7 cut(s) 31, 224, 320, 431, 437, 599, 771
FaqI GGGAC 1 cut(s) 177
FatI CATG 7 cut(s) 27, 220, 316, 427, 433, 595, 767
FbaI TGATCA 2 cut(s) 69, 598
Fnu4HI GCNGC 4 cut(s) 344, 693, 696, 705
FokI GGATG 2 cut(s) 456, 871
FriOI GRGCYC 1 cut(s) 893
Fsp4HI GCNGC 4 cut(s) 344, 693, 696, 705
FspBI CTAG 2 cut(s) 150, 831
GlaI GCGC 2 cut(s) 475, 677
GluI GCNGC 4 cut(s) 344, 693, 696, 705
HaeII RGCGCY 1 cut(s) 679
HaeIII GGCC 1 cut(s) 337
HapII CCGG 2 cut(s) 334, 785
HgaI GACGC 2 cut(s) 179, 698
HhaI GCGC 2 cut(s) 476, 678
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 7 cut(s) 31, 224, 320, 431, 437, 599, 771
Hin6I GCGC 2 cut(s) 474, 676
HinP1I GCGC 2 cut(s) 474, 676
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 3 cut(s) 380, 632, 646
HpaII CCGG 2 cut(s) 334, 785
HphI GGTGA 2 cut(s) 335, 819
Hpy166II GTNNAC 2 cut(s) 481, 905
Hpy188I TCNGA 5 cut(s) 112, 529, 556, 607, 615
Hpy188III TCNNGA 7 cut(s) 67, 377, 401, 428, 503, 686, 801
Hpy8I GTNNAC 2 cut(s) 481, 905
Hpy99I CGWCG 2 cut(s) 311, 515
HpyAV CCTTC 2 cut(s) 61, 532
HpyCH4III ACNGT 3 cut(s) 25, 654, 808
HpyCH4IV ACGT 2 cut(s) 390, 492
HpyCH4V TGCA 3 cut(s) 170, 698, 707
HpyF10VI GCNNNNNNNGC 7 cut(s) 137, 343, 701, 704, 713, 862, 871
HpyF3I CTNAG 5 cut(s) 109, 233, 604, 725, 915
HpySE526I ACGT 2 cut(s) 390, 492
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 7 cut(s) 31, 224, 320, 431, 437, 599, 771
HspAI GCGC 2 cut(s) 474, 676
KpnI GGTACC 1 cut(s) 10
Ksp22I TGATCA 2 cut(s) 69, 598
Kzo9I GATC 4 cut(s) 69, 499, 598, 738
LmnI GCTCC 2 cut(s) 207, 280
Lsp1109I GCAGC 4 cut(s) 330, 679, 682, 691
LweI GCATC 5 cut(s) 118, 439, 520, 598, 716
MaeI CTAG 2 cut(s) 150, 831
MaeII ACGT 2 cut(s) 390, 492
MaeIII GTNAC 2 cut(s) 228, 323
MalI GATC 4 cut(s) 71, 501, 600, 740
MboI GATC 4 cut(s) 69, 499, 598, 738
MboII GAAGA 5 cut(s) 137, 257, 674, 816, 838
MhlI GDGCHC 2 cut(s) 212, 893
MluCI AATT 3 cut(s) 15, 487, 742
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 6 cut(s) 74, 188, 384, 550, 781, 924
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 5 cut(s) 321, 432, 438, 539, 606
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 2 cut(s) 334, 785
MspR9I CCNGG 3 cut(s) 279, 334, 351
Mva1269I GAATGC 1 cut(s) 159
MvaI CCWGG 2 cut(s) 279, 351
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 7 cut(s) 137, 343, 701, 704, 713, 862, 871
NciI CCSGG 1 cut(s) 334
NcoI CCATGG 1 cut(s) 767
NdeII GATC 4 cut(s) 69, 499, 598, 738
NlaIII CATG 7 cut(s) 31, 224, 320, 431, 437, 599, 771
NlaIV GGNNCC 1 cut(s) 8
NmuCI GTSAC 2 cut(s) 228, 323
PagI TCATGA 1 cut(s) 427
PctI GAATGC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 380, 646
PkrI GCNGC 4 cut(s) 345, 694, 697, 706
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
Psp1406I AACGTT 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 277, 349
PspGI CCWGG 2 cut(s) 277, 349
PspN4I GGNNCC 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 692
RsaI GTAC 2 cut(s) 8, 869
RsaNI GTAC 2 cut(s) 7, 868
RseI CAYNNNNRTG 5 cut(s) 321, 432, 438, 539, 606
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 4 cut(s) 344, 693, 696, 705
Sau3AI GATC 4 cut(s) 69, 499, 598, 738
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 3 cut(s) 279, 334, 351
SduI GDGCHC 2 cut(s) 212, 893
SfaNI GCATC 5 cut(s) 118, 439, 520, 598, 716
SfcI CTRYAG 2 cut(s) 561, 894
SmiMI CAYNNNNRTG 5 cut(s) 321, 432, 438, 539, 606
SmlI CTYRAG 2 cut(s) 80, 202
SmoI CTYRAG 2 cut(s) 80, 202
Sse9I AATT 3 cut(s) 15, 487, 742
SsiI CCGC 1 cut(s) 856
SspMI CTAG 2 cut(s) 150, 831
StyD4I CCNGG 3 cut(s) 277, 332, 349
StyI CCWWGG 3 cut(s) 767, 830, 851
TaaI ACNGT 3 cut(s) 25, 654, 808
TaiI ACGT 2 cut(s) 393, 495
TaqI TCGA 2 cut(s) 510, 672
TasI AATT 3 cut(s) 15, 487, 742
TatI WGTACW 1 cut(s) 867
TfiI GAWTC 2 cut(s) 380, 646
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 4 cut(s) 237, 368, 643, 928
TseFI GTSAC 2 cut(s) 228, 323
TseI GCWGC 4 cut(s) 343, 692, 695, 704
Tsp45I GTSAC 2 cut(s) 228, 323
TspDTI ATGAA 4 cut(s) 416, 531, 659, 875
TspRI CASTG 4 cut(s) 237, 368, 643, 928
Vha464I CTTAAG 1 cut(s) 80
XmaJI CCTAGG 1 cut(s) 830
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 2 cut(s) 150, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.