Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014014

Physical Location & Seq

Genomic Coordinates Forward (+)

19243902 .. 19246936

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAAGAAGACAGAGCGATTCTCACTTTTCACCGTATCCCTTCCCTCAATTCCTCCTTAATAACAACCTCTTCTCCGGCCAAATCCGGCGCCGAACAGTTTCGCCGCCGTGTTCTGCGAAATCCAGCTCGCGGAGATTTCGGTTTAGGTAGATTCGCGTGCATTTCACTCGTGGAGAAGTGCGAACAGAGAGAATTCGCTCCGACGACAGCTCAGCTCTTGAACAATCCTCTAGCTATTCTTGCTCTTGTCCCTAAGGATGCAGCTATTTTTGCCGCCGGTGCTCTTGCCGGAGCCGCCGCTAAAACTGTTACTGCTCCTCTTGACCGTATCAAACTTCTTATGCAGACACATGGTATAAGACTTGGACAACAGAGTGCGAAGAAGGCGATAGGATTTATCGAGGCAATCACTTTGATAGCTAAAGAAGAAGGAGTTAAAGGTTATTGGAAAGGAAATTTACCTCAGGTGATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTATGAGAGTTACAAGAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATCGGAAGACTTGCAGCTGGTGCTTGTGCTGGCATGACATCTACTTTGTTGACATACCCTCTAGATGTTTTGAGATTGAGGTTGGCTGTCGAACCTGGGTATCGAACAATGTCTCAGGTTGCTTTGAGTATGCTCCGTGATGAAGGAATCGCATCTTTCTATTACGGTCTAGGACCTTCTCTAGTGGGGATAGCTCCATATATTGCTGTAAACTTTTGTATTTTCGATCTGGTGAAGAAGTCTTTACCGGAGGAATATAGAAAGAAGGCACAATCGTCTCTATTAACAGCTGTTCTCTCAGCTGGTATTGCAACACTGACATGTTACCCTCTAGACACTGTGAGACGGCAAATGCAAATGAGAGGAACTCCATACAAATCAATTCCGGAGGCATTTGCTGGAATTATAGACCGTGATGGGCTTATAGGCTTGTACCGCGGCTTTTTACCCAATGCATTGAAAACTCTACCAAACAGCAGTATTAGGCTTACAACCTTCGACATGGTAAAGCGCCTTATCGCCACAAGTGAGAAGCAGCTTCAAAAGATCAGCGATGATAATCGGAATCGAGACCAAGCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009941 GO:0015075 GO:0015215 GO:0015216 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

381

Amino Acids

41.72

Weight (kDa)

9.7

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	90 - 181	1.1e-25	Mitochondrial carrier protein
Mito_carr	PF00153	184 - 271	4.3e-20	Mitochondrial carrier protein
Mito_carr	PF00153	276 - 362	1.1e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51870
fragaria_vesca	FvH4_6g11494
malus_domestica	MD04G1151500.v1.1 MD12G1165700.v1.1
prunus_persica	Prupe.6G276700_v2.0.a1
pyrus_communis	pycom04g13750 pycom12g15820
rosa_chinensis	RchiOBHm_Chr3g0463201
rosa_laevigata	RLG00000024803
rosa_multiflora	Rmu_sc0008079.1_g000010 Rmu_sc0022743.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416810
rosa_rugosa	Rorug03G0062300
rosa_samantha	Rh3AG120500 Rh3BG124900 Rh3CG127000
rosa_wichuraiana	Rw3G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccII	CGCG	3 cut(s)	132, 158, 999
AccIII	TCCGGA	1 cut(s)	946
AciI	CCGC	8 cut(s)	106, 132, 276, 297, 300, 494, 997, 999
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	194, 457
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	995
AfiI	CCNNNNNNNGG	2 cut(s)	131, 505
AflIII	ACRYGT	1 cut(s)	881
AgsI	TTSAA	4 cut(s)	223, 535, 1021, 1103
AjnI	CCWGG	1 cut(s)	655
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	4 cut(s)	678, 843, 898, 1125
Aor13HI	TCCGGA	1 cut(s)	946
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	3 cut(s)	263, 575, 1096
ApoI	RAATTY	2 cut(s)	194, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
Asp700I	GAANNNNTTC	2 cut(s)	99, 530
AspLEI	GCGC	2 cut(s)	92, 1074
AspS9I	GGNCC	2 cut(s)	496, 734
AsuHPI	GGTGA	3 cut(s)	23, 481, 805
AvaII	GGWCC	2 cut(s)	496, 734
AxyI	CCTNAGG	2 cut(s)	255, 465
BaeI	ACNNNNGTAYC	2 cut(s)	644, 677
BanI	GGYRCC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	170
BbsI	GAAGAC	2 cut(s)	15, 574
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	3 cut(s)	275, 587, 1108
BccI	CCATC	1 cut(s)	971
BceAI	ACGGC	2 cut(s)	93, 923
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	657
BciVI	GTATCC	1 cut(s)	47
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	4 cut(s)	678, 843, 898, 1125
BfaI	CTAG	5 cut(s)	233, 623, 731, 743, 893
BfoI	RGCGCY	2 cut(s)	93, 1075
BfuI	GTATCC	1 cut(s)	47
BisI	GCNGC	8 cut(s)	106, 264, 276, 297, 300, 576, 1000, 1097
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	8 cut(s)	107, 265, 277, 298, 301, 577, 1001, 1098
Bme1390I	CCNGG	1 cut(s)	657
Bme18I	GGWCC	2 cut(s)	496, 734
BmgT120I	GGNCC	2 cut(s)	496, 734
BmiI	GGNNCC	2 cut(s)	91, 295
BmrFI	CCNGG	1 cut(s)	657
BmsI	GCATC	2 cut(s)	250, 722
BpiI	GAAGAC	2 cut(s)	15, 574
BplI	GAGNNNNNCTC	3 cut(s)	38, 913, 945
Bpu1102I	GCTNAGC	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	1119
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	1125
BsaJI	CCNNGG	2 cut(s)	656, 997
BsaWI	WCCGGW	2 cut(s)	808, 946
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 505
Bse118I	RCCGGY	1 cut(s)	278
Bse21I	CCTNAGG	2 cut(s)	255, 465
Bse8I	GATNNNNATC	1 cut(s)	1119
BseAI	TCCGGA	1 cut(s)	946
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	2 cut(s)	656, 997
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	1119
BseLI	CCNNNNNNNGG	2 cut(s)	131, 505
BseMII	CTCAG	5 cut(s)	227, 479, 570, 689, 873
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	275, 587, 1108
Bsh1236I	CGCG	3 cut(s)	132, 158, 999
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	6 cut(s)	77, 87, 279, 291, 809, 947
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	131, 505
BsmAI	GTCTC	4 cut(s)	678, 843, 898, 1125
BsmBI	CGTCTC	2 cut(s)	843, 898
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	1125
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp13I	TCCGGA	1 cut(s)	946
Bsp143I	GATC	3 cut(s)	547, 787, 1107
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	8 cut(s)	106, 132, 276, 297, 300, 494, 997, 999
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	5 cut(s)	226, 478, 569, 688, 872
BspEI	TCCGGA	1 cut(s)	946
BspFNI	CGCG	3 cut(s)	132, 158, 999
BspLI	GGNNCC	2 cut(s)	91, 295
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	1125
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	656, 997
BssMI	GATC	3 cut(s)	547, 787, 1107
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	8 cut(s)	35, 99, 310, 329, 491, 728, 901, 974
Bst6I	CTCTTC	1 cut(s)	76
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	130, 160, 592
BstDEI	CTNAG	6 cut(s)	213, 255, 465, 556, 675, 859
BstDSI	CCRYGG	1 cut(s)	997
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	3 cut(s)	132, 158, 999
BstH2I	RGCGCY	2 cut(s)	93, 1075
BstHHI	GCGC	2 cut(s)	92, 1074
BstKTI	GATC	3 cut(s)	550, 790, 1110
BstMAI	GTCTC	4 cut(s)	678, 843, 898, 1125
BstMBI	GATC	3 cut(s)	547, 787, 1107
BstMWI	GCNNNNNNNGC	8 cut(s)	242, 272, 281, 296, 386, 581, 869, 996
BstNI	CCWGG	1 cut(s)	657
BstNSI	RCATGY	1 cut(s)	885
BstSCI	CCNGG	1 cut(s)	655
BstUI	CGCG	3 cut(s)	132, 158, 999
BstV1I	GCAGC	3 cut(s)	275, 587, 1108
BstV2I	GAAGAC	2 cut(s)	15, 574
Bsu36I	CCTNAGG	2 cut(s)	255, 465
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	997
BtgZI	GCGATG	1 cut(s)	1128
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	3 cut(s)	496, 875, 897
Cac8I	GCNNGC	3 cut(s)	130, 160, 592
CfoI	GCGC	2 cut(s)	92, 1074
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	496, 734
Cfr42I	CCGCGG	1 cut(s)	1000
Csp6I	GTAC	1 cut(s)	994
CviAII	CATG	4 cut(s)	353, 595, 882, 1063
CviQI	GTAC	1 cut(s)	994
DdeI	CTNAG	6 cut(s)	213, 255, 465, 556, 675, 859
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	3 cut(s)	549, 789, 1109
DpnII	GATC	3 cut(s)	547, 787, 1107
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	1125
Eco47I	GGWCC	2 cut(s)	496, 734
Eco81I	CCTNAGG	2 cut(s)	255, 465
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	655
EcoT22I	ATGCAT	1 cut(s)	1018
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
Esp3I	CGTCTC	2 cut(s)	843, 898
FaeI	CATG	4 cut(s)	356, 598, 885, 1066
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	4 cut(s)	352, 594, 881, 1062
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	8 cut(s)	106, 264, 276, 297, 300, 576, 1000, 1097
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	8 cut(s)	106, 264, 276, 297, 300, 576, 1000, 1097
FspBI	CTAG	5 cut(s)	233, 623, 731, 743, 893
GlaI	GCGC	2 cut(s)	91, 1073
GluI	GCNGC	8 cut(s)	106, 264, 276, 297, 300, 576, 1000, 1097
HaeII	RGCGCY	2 cut(s)	93, 1075
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	6 cut(s)	77, 87, 279, 291, 809, 947
HhaI	GCGC	2 cut(s)	92, 1074
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	356, 598, 885, 1066
Hin6I	GCGC	2 cut(s)	90, 1072
HinP1I	GCGC	2 cut(s)	90, 1072
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	4 cut(s)	19, 153, 708, 1126
HpaII	CCGG	6 cut(s)	77, 87, 279, 291, 809, 947
HphI	GGTGA	3 cut(s)	23, 481, 805
Hpy166II	GTNNAC	2 cut(s)	612, 772
Hpy188I	TCNGA	3 cut(s)	204, 566, 1125
Hpy188III	TCNNGA	6 cut(s)	220, 323, 623, 893, 947, 1130
Hpy8I	GTNNAC	2 cut(s)	612, 772
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	7 cut(s)	51, 379, 425, 698, 747, 820, 1066
HpyCH4III	ACNGT	8 cut(s)	35, 99, 310, 329, 491, 728, 901, 974
HpyCH4V	TGCA	7 cut(s)	162, 263, 346, 575, 872, 916, 1016
HpyF10VI	GCNNNNNNNGC	8 cut(s)	242, 272, 281, 296, 386, 581, 869, 996
HpyF3I	CTNAG	6 cut(s)	213, 255, 465, 556, 675, 859
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	356, 598, 885, 1066
HspAI	GCGC	2 cut(s)	90, 1072
KasI	GGCGCC	1 cut(s)	89
Kpn2I	TCCGGA	1 cut(s)	946
Ksp22I	TGATCA	1 cut(s)	547
KspI	CCGCGG	1 cut(s)	1000
Kzo9I	GATC	3 cut(s)	547, 787, 1107
LmnI	GCTCC	5 cut(s)	205, 293, 322, 699, 760
Lsp1109I	GCAGC	3 cut(s)	275, 587, 1108
LweI	GCATC	2 cut(s)	250, 722
MaeI	CTAG	5 cut(s)	233, 623, 731, 743, 893
MaeIII	GTNAC	4 cut(s)	310, 480, 518, 884
MalI	GATC	3 cut(s)	549, 789, 1109
MboI	GATC	3 cut(s)	547, 787, 1107
MboII	GAAGA	7 cut(s)	17, 20, 63, 394, 440, 579, 808
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	5 cut(s)	49, 194, 457, 942, 963
Mly113I	GGCGCC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	227
Mph1103I	ATGCAT	1 cut(s)	1018
MroI	TCCGGA	1 cut(s)	946
MroXI	GAANNNNTTC	2 cut(s)	99, 530
MseI	TTAA	3 cut(s)	59, 438, 845
MslI	CAYNNNNRTG	1 cut(s)	880
MspA1I	CMGCKG	4 cut(s)	578, 851, 863, 999
MspI	CCGG	6 cut(s)	77, 87, 279, 291, 809, 947
MspR9I	CCNGG	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	657
MvnI	CGCG	3 cut(s)	132, 158, 999
MwoI	GCNNNNNNNGC	8 cut(s)	242, 272, 281, 296, 386, 581, 869, 996
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	3 cut(s)	547, 787, 1107
NlaIII	CATG	4 cut(s)	356, 598, 885, 1066
NlaIV	GGNNCC	2 cut(s)	91, 295
NsiI	ATGCAT	1 cut(s)	1018
NspI	RCATGY	1 cut(s)	885
PciI	ACATGT	1 cut(s)	881
PdmI	GAANNNNTTC	2 cut(s)	99, 530
PfeI	GAWTC	4 cut(s)	19, 153, 708, 1126
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	8 cut(s)	107, 265, 277, 298, 301, 577, 1001, 1098
PluTI	GGCGCC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	734
PscI	ACATGT	1 cut(s)	881
Psp5II	RGGWCCY	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	91, 295
PspPI	GGNCC	2 cut(s)	496, 734
PspPPI	RGGWCCY	1 cut(s)	734
PvuII	CAGCTG	3 cut(s)	578, 851, 863
RsaI	GTAC	1 cut(s)	995
RsaNI	GTAC	1 cut(s)	994
RseI	CAYNNNNRTG	1 cut(s)	880
SacII	CCGCGG	1 cut(s)	1000
SaqAI	TTAA	3 cut(s)	59, 438, 845
SatI	GCNGC	8 cut(s)	106, 264, 276, 297, 300, 576, 1000, 1097
Sau3AI	GATC	3 cut(s)	547, 787, 1107
Sau96I	GGNCC	2 cut(s)	496, 734
ScrFI	CCNGG	1 cut(s)	657
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	2 cut(s)	250, 722
SfoI	GGCGCC	1 cut(s)	91
Sfr303I	CCGCGG	1 cut(s)	1000
SgrAI	CRCCGGYG	1 cut(s)	278
SgrBI	CCGCGG	1 cut(s)	1000
SinI	GGWCC	2 cut(s)	496, 734
SmiMI	CAYNNNNRTG	1 cut(s)	880
Sse9I	AATT	5 cut(s)	49, 194, 457, 942, 963
SsiI	CCGC	8 cut(s)	106, 132, 276, 297, 300, 494, 997, 999
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	5 cut(s)	233, 623, 731, 743, 893
StyD4I	CCNGG	1 cut(s)	655
TaaI	ACNGT	8 cut(s)	35, 99, 310, 329, 491, 728, 901, 974
TaqI	TCGA	6 cut(s)	402, 651, 664, 786, 1059, 1129
TasI	AATT	5 cut(s)	49, 194, 457, 942, 963
TauI	GCSGC	5 cut(s)	108, 278, 299, 302, 1002
TfiI	GAWTC	4 cut(s)	19, 153, 708, 1126
Tru1I	TTAA	3 cut(s)	59, 438, 845
Tru9I	TTAA	3 cut(s)	59, 438, 845
TscAI	CASTG	3 cut(s)	496, 882, 904
TseI	GCWGC	3 cut(s)	263, 575, 1096
TspDTI	ATGAA	1 cut(s)	717
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	3 cut(s)	496, 882, 904
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	2 cut(s)	496, 734
XapI	RAATTY	2 cut(s)	194, 457
XbaI	TCTAGA	2 cut(s)	622, 892
XceI	RCATGY	1 cut(s)	885
XmnI	GAANNNNTTC	2 cut(s)	99, 530
XspI	CTAG	5 cut(s)	233, 623, 731, 743, 893
Zsp2I	ATGCAT	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.