MD04G1151500.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
24037299 .. 24045720
8422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1151500.v1.1.491

Sequence Viewer

Length: 1143 bp
ATGGCCGAAGACTCCAGAGCCATTGTATCATGGCGGAGCATCCCGAGCCTCAACGCCTCCCGCGGCGCCCTCACCGACGCCGCGGACCACTACGAACCGCTGTGGACGACCGCGCATCTCAGCTTCAGCAGCGGCGGTGGTACTCGGTTCAATTTCGCCTGCATTTCGGTGGCGGAAAGGGGAGAACAGAGGAACGAGTTTTCGCCGACTTCGGCTCAGCTGTTGAAGCATCCGTTGGCTATTCTCGCATGCGTGCCCAAAGACGTTGCTCTATTTGCTGCCGGAGCCGTCGCTGGAGCCGCCGCTAAGAGCGTCACGGCTCCGCTCGACCGCATCAAGATTCTTATGCAGACTCATGGCGTGCGAGTTGGGCAACAAAGCGCTAAGAAGGCTATCAGTTTTGTCGAGGCTATAACAATGATAGGGAAGGAAGAAGGGATTAAAGGGTACTGGAAAGGCAACCTTCCTCAGGTGATACGGATTCTCCCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAGCTTATAAGAAACTCTTTAGGGGCAAAGATAGTGAGCTATCTCTTCTAGGAAGACTTGCAGCAGGTGCTTGTGCTGGCATGACATCCACCTTTGTAACCTACCCATTGGATGTTCTGAGGTTGCGCCTAGCAGTTGAACCAGGGTACCGAACTATGTCTGAGATTGCCTTAAACATGCTAAAAGAGGAAGGAGTTGCATCCTTCTACTATGGTCTCGGACCTTCTCTGATCGGAATTGCTCCATATATTGCTGTGAACTTTTGCATTTTTGACTTGGTGAAGAAGTCTCTACCAGAAGATTTTCAAAAGAAAGCTGAAGCATCTCTATTAACGGGTTTGGTGTCAGCTTCCCTTGCCACACTCACATGTTATCCTTTAGATACTGTGAGAAGACAGATGCAAATGAAGGGCACACCTTACAAGACGGTTTTGGATGCCATTCCAGGTATTGTGGAGCGTGATGGACTTGTAGGCTTATATAGGGGTTTCTTGCCTAATGCTTTGAAAACTTTACCGAACAGCAGCATTAGGCTCACTACTTACGACATGGTCAAGCGTCTCATTTCCACCAGCCAAAAAGAGTTTCAGAGAATTGTGGAGGAAAATCGCAGTAAACACCATTAA

Protein Analysis

381

Amino Acids

41.52

Weight (kDa)

9.4

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 90 - 182 2.5e-25 Mitochondrial carrier protein
Mito_carr PF00153 185 - 272 1.3e-20 Mitochondrial carrier protein
Mito_carr PF00153 280 - 363 2.4e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51870
fragaria_vesca FvH4_6g11494
malus_domestica MD04G1151500.v1.1 MD12G1165700.v1.1
prunus_persica Prupe.6G276700_v2.0.a1
pyrus_communis pycom04g13750 pycom12g15820
rosa_chinensis RchiOBHm_Chr3g0463201
rosa_laevigata RLG00000024803
rosa_multiflora Rmu_sc0008079.1_g000010 Rmu_sc0022743.1_g000002
rosa_roxburghii Rroxscaffold_6G00416810
rosa_rugosa Rorug03G0062300
rosa_samantha Rh3AG120500 Rh3BG124900 Rh3CG127000
rosa_wichuraiana Rw3G010230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AarI CACCTGC 1 cut(s) 572
Acc36I ACCTGC 1 cut(s) 572
Acc65I GGTACC 1 cut(s) 663
AccB1I GGYRCC 2 cut(s) 65, 663
AccBSI CCGCTC 1 cut(s) 325
AccII CGCG 3 cut(s) 63, 83, 113
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 109, 855
AcyI GRCGYC 2 cut(s) 66, 78
AfaI GTAC 3 cut(s) 142, 449, 665
AfeI AGCGCT 1 cut(s) 382
AfiI CCNNNNNNNGG 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 884
AgsI TTSAA 5 cut(s) 151, 226, 656, 824, 1024
AjnI CCWGG 2 cut(s) 658, 961
AjuI GAANNNNNNNTTGG 4 cut(s) 218, 250, 1086, 1118
AluBI AGCT 7 cut(s) 123, 220, 505, 521, 556, 833, 866
AluI AGCT 7 cut(s) 123, 220, 505, 521, 556, 833, 866
Alw26I GTCTC 3 cut(s) 737, 810, 1082
Ama87I CYCGRG 1 cut(s) 43
Aor51HI AGCGCT 1 cut(s) 382
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 129, 278, 578, 1041
Asp700I GAANNNNTTC 1 cut(s) 819
Asp718I GGTACC 1 cut(s) 663
AspLEI GCGC 4 cut(s) 68, 115, 383, 645
AspS9I GGNCC 2 cut(s) 85, 737
AsuHPI GGTGA 3 cut(s) 64, 484, 808
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 2 cut(s) 85, 737
AxyI CCTNAGG 1 cut(s) 468
BaeGI GKGCMC 2 cut(s) 258, 932
BaeI ACNNNNGTAYC 2 cut(s) 647, 680
BanI GGYRCC 2 cut(s) 65, 663
BbsI GAAGAC 3 cut(s) 15, 577, 916
BbvI GCAGC 4 cut(s) 141, 265, 590, 1053
BccI CCATC 1 cut(s) 974
BceAI ACGGC 2 cut(s) 272, 333
BciT130I CCWGG 2 cut(s) 660, 963
BcoDI GTCTC 3 cut(s) 737, 810, 1082
BfaI CTAG 2 cut(s) 566, 647
BfoI RGCGCY 2 cut(s) 69, 384
BfuAI ACCTGC 1 cut(s) 572
BisI GCNGC 9 cut(s) 64, 81, 130, 133, 279, 300, 303, 579, 1042
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 9 cut(s) 65, 82, 131, 134, 280, 301, 304, 580, 1043
Bme1390I CCNGG 2 cut(s) 660, 963
Bme18I GGWCC 2 cut(s) 85, 737
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 85, 737
BmiI GGNNCC 5 cut(s) 67, 286, 298, 321, 665
BmrFI CCNGG 2 cut(s) 660, 963
BmsI GCATC 8 cut(s) 48, 124, 238, 342, 725, 848, 906, 943
BpiI GAAGAC 3 cut(s) 15, 577, 916
BpmI CTGGAG 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 216
BsaHI GRCGYC 2 cut(s) 66, 78
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 61, 81, 659
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 455
Bse21I CCTNAGG 1 cut(s) 468
BseBI CCWGG 2 cut(s) 660, 963
BseDI CCNNGG 3 cut(s) 61, 81, 659
BseGI GGATG 6 cut(s) 39, 229, 602, 634, 716, 958
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMII CTCAG 5 cut(s) 133, 230, 482, 626, 669
BseNI ACTGG 1 cut(s) 455
BseSI GKGCMC 2 cut(s) 258, 932
BseXI GCAGC 4 cut(s) 141, 265, 590, 1053
Bsh1236I CGCG 3 cut(s) 63, 83, 113
Bsh1285I CGRYCG 2 cut(s) 111, 331
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 65, 663
BsiEI CGRYCG 2 cut(s) 111, 331
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 3 cut(s) 737, 810, 1082
BsmBI CGTCTC 1 cut(s) 1082
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 737
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 258, 932
Bsp143I GATC 1 cut(s) 747
Bsp1720I GCTNAGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 5 cut(s) 132, 229, 481, 627, 670
BspFNI CGCG 3 cut(s) 63, 83, 113
BspLI GGNNCC 5 cut(s) 67, 286, 298, 321, 665
BspMI ACCTGC 1 cut(s) 572
BspT107I GGYRCC 2 cut(s) 65, 663
BspTNI GGTCTC 1 cut(s) 737
BsrBI CCGCTC 1 cut(s) 325
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 3 cut(s) 61, 81, 659
BssMI GATC 1 cut(s) 747
BssNI GRCGYC 2 cut(s) 66, 78
Bst2UI CCWGG 2 cut(s) 660, 963
Bst4CI ACNGT 3 cut(s) 494, 904, 946
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 2 cut(s) 66, 78
BstAPI GCANNNNNTGC 1 cut(s) 584
BstC8I GCNNGC 5 cut(s) 160, 250, 254, 362, 595
BstDEI CTNAG 7 cut(s) 119, 216, 306, 384, 468, 635, 678
BstDSI CCRYGG 2 cut(s) 61, 81
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 6 cut(s) 39, 229, 602, 634, 716, 958
BstFNI CGCG 3 cut(s) 63, 83, 113
BstH2I RGCGCY 2 cut(s) 69, 384
BstHHI GCGC 4 cut(s) 68, 115, 383, 645
BstKTI GATC 1 cut(s) 750
BstMAI GTCTC 3 cut(s) 737, 810, 1082
BstMBI GATC 1 cut(s) 747
BstMCI CGRYCG 2 cut(s) 111, 331
BstNI CCWGG 2 cut(s) 660, 963
BstNSI RCATGY 3 cut(s) 252, 697, 888
BstSCI CCNGG 2 cut(s) 658, 961
BstSLI GKGCMC 2 cut(s) 258, 932
BstUI CGCG 3 cut(s) 63, 83, 113
BstV1I GCAGC 4 cut(s) 141, 265, 590, 1053
BstV2I GAAGAC 3 cut(s) 15, 577, 916
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 61, 81
BtsCI GGATG 6 cut(s) 39, 229, 602, 634, 716, 958
BtsIMutI CAGTG 1 cut(s) 499
BveI ACCTGC 1 cut(s) 572
Cac8I GCNNGC 5 cut(s) 160, 250, 254, 362, 595
CfoI GCGC 4 cut(s) 68, 115, 383, 645
Cfr13I GGNCC 2 cut(s) 85, 737
Cfr42I CCGCGG 2 cut(s) 64, 84
CseI GACGC 3 cut(s) 86, 301, 1064
Csp6I GTAC 3 cut(s) 141, 448, 664
CviAII CATG 7 cut(s) 30, 249, 356, 598, 694, 885, 1066
CviQI GTAC 3 cut(s) 141, 448, 664
DdeI CTNAG 7 cut(s) 119, 216, 306, 384, 468, 635, 678
DinI GGCGCC 1 cut(s) 67
DpnI GATC 1 cut(s) 749
DpnII GATC 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EciI GGCGGA 2 cut(s) 49, 188
Eco31I GGTCTC 1 cut(s) 737
Eco47I GGWCC 2 cut(s) 85, 737
Eco47III AGCGCT 1 cut(s) 382
Eco57I CTGAAG 2 cut(s) 109, 855
Eco81I CCTNAGG 1 cut(s) 468
Eco88I CYCGRG 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 658, 961
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 1082
FaeI CATG 7 cut(s) 33, 252, 359, 601, 697, 888, 1069
FalI AAGNNNNNCTT 4 cut(s) 447, 479, 518, 550
FatI CATG 7 cut(s) 29, 248, 355, 597, 693, 884, 1065
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 9 cut(s) 64, 81, 130, 133, 279, 300, 303, 579, 1042
FokI GGATG 6 cut(s) 26, 216, 589, 641, 703, 965
Fsp4HI GCNGC 9 cut(s) 64, 81, 130, 133, 279, 300, 303, 579, 1042
FspBI CTAG 2 cut(s) 566, 647
GlaI GCGC 4 cut(s) 67, 114, 382, 644
GluI GCNGC 9 cut(s) 64, 81, 130, 133, 279, 300, 303, 579, 1042
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 2 cut(s) 69, 384
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 282
HgaI GACGC 3 cut(s) 86, 301, 1064
HhaI GCGC 4 cut(s) 68, 115, 383, 645
Hin1I GRCGYC 2 cut(s) 66, 78
Hin1II CATG 7 cut(s) 33, 252, 359, 601, 697, 888, 1069
Hin6I GCGC 4 cut(s) 66, 113, 381, 643
HinP1I GCGC 4 cut(s) 66, 113, 381, 643
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 4 cut(s) 11, 340, 352, 481
HpaII CCGG 1 cut(s) 282
HphI GGTGA 3 cut(s) 64, 484, 808
Hpy166II GTNNAC 3 cut(s) 105, 775, 1133
Hpy188I TCNGA 6 cut(s) 636, 679, 737, 747, 752, 1107
Hpy188III TCNNGA 3 cut(s) 15, 43, 337
Hpy8I GTNNAC 3 cut(s) 105, 775, 1133
Hpy99I CGWCG 2 cut(s) 80, 293
HpyAV CCTTC 8 cut(s) 382, 421, 428, 473, 701, 730, 750, 919
HpyCH4III ACNGT 3 cut(s) 494, 904, 946
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 6 cut(s) 162, 349, 578, 716, 783, 919
HpyF3I CTNAG 7 cut(s) 119, 216, 306, 384, 468, 635, 678
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 2 cut(s) 66, 78
Hsp92II CATG 7 cut(s) 33, 252, 359, 601, 697, 888, 1069
HspAI GCGC 4 cut(s) 66, 113, 381, 643
KasI GGCGCC 1 cut(s) 65
KpnI GGTACC 1 cut(s) 667
KspI CCGCGG 2 cut(s) 64, 84
Kzo9I GATC 1 cut(s) 747
LmnI GCTCC 6 cut(s) 36, 284, 296, 325, 763, 973
Lsp1109I GCAGC 4 cut(s) 141, 265, 590, 1053
LweI GCATC 8 cut(s) 48, 124, 238, 342, 725, 848, 906, 943
MaeI CTAG 2 cut(s) 566, 647
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 313, 613
MalI GATC 1 cut(s) 749
MbiI CCGCTC 1 cut(s) 325
MboI GATC 1 cut(s) 747
MboII GAAGA 7 cut(s) 20, 443, 554, 582, 811, 827, 921
MhlI GDGCHC 2 cut(s) 258, 932
MluCI AATT 3 cut(s) 151, 753, 1110
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 2 cut(s) 5, 346
MnlI CCTC 9 cut(s) 59, 67, 80, 183, 400, 477, 630, 697, 1111
MroXI GAANNNNTTC 1 cut(s) 819
MseI TTAA 4 cut(s) 441, 689, 848, 1141
MslI CAYNNNNRTG 2 cut(s) 167, 883
MspA1I CMGCKG 5 cut(s) 63, 83, 100, 132, 220
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 2 cut(s) 660, 963
MvaI CCWGG 2 cut(s) 660, 963
MvnI CGCG 3 cut(s) 63, 83, 113
NarI GGCGCC 1 cut(s) 66
NdeII GATC 1 cut(s) 747
NlaIII CATG 7 cut(s) 33, 252, 359, 601, 697, 888, 1069
NlaIV GGNNCC 5 cut(s) 67, 286, 298, 321, 665
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 3 cut(s) 252, 697, 888
PaeI GCATGC 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 572
PciI ACATGT 1 cut(s) 884
PdmI GAANNNNTTC 1 cut(s) 819
PfeI GAWTC 2 cut(s) 340, 481
PflFI GACNNNGTC 1 cut(s) 1067
PkrI GCNGC 9 cut(s) 65, 82, 131, 134, 280, 301, 304, 580, 1043
PleI GAGTC 2 cut(s) 5, 346
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 2 cut(s) 5, 346
PscI ACATGT 1 cut(s) 884
PsiI TTATAA 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 658, 961
PspGI CCWGG 2 cut(s) 658, 961
PspN4I GGNNCC 5 cut(s) 67, 286, 298, 321, 665
PspPI GGNCC 2 cut(s) 85, 737
PsyI GACNNNGTC 1 cut(s) 1067
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 3 cut(s) 142, 449, 665
RsaNI GTAC 3 cut(s) 141, 448, 664
RseI CAYNNNNRTG 2 cut(s) 167, 883
SacII CCGCGG 2 cut(s) 64, 84
SaqAI TTAA 4 cut(s) 441, 689, 848, 1141
SatI GCNGC 9 cut(s) 64, 81, 130, 133, 279, 300, 303, 579, 1042
Sau3AI GATC 1 cut(s) 747
Sau96I GGNCC 2 cut(s) 85, 737
SchI GAGTC 2 cut(s) 5, 346
ScrFI CCNGG 2 cut(s) 660, 963
SduI GDGCHC 2 cut(s) 258, 932
SfaNI GCATC 8 cut(s) 48, 124, 238, 342, 725, 848, 906, 943
SfoI GGCGCC 1 cut(s) 67
Sfr303I CCGCGG 2 cut(s) 64, 84
SgrBI CCGCGG 2 cut(s) 64, 84
SinI GGWCC 2 cut(s) 85, 737
SmiMI CAYNNNNRTG 2 cut(s) 167, 883
SphI GCATGC 1 cut(s) 252
Sse9I AATT 3 cut(s) 151, 753, 1110
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 2 cut(s) 566, 647
StyD4I CCNGG 2 cut(s) 658, 961
TaaI ACNGT 3 cut(s) 494, 904, 946
TaiI ACGT 1 cut(s) 267
TaqI TCGA 2 cut(s) 327, 405
TasI AATT 3 cut(s) 151, 753, 1110
TauI GCSGC 5 cut(s) 66, 83, 135, 302, 305
TfiI GAWTC 2 cut(s) 340, 481
Tru1I TTAA 4 cut(s) 441, 689, 848, 1141
Tru9I TTAA 4 cut(s) 441, 689, 848, 1141
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 4 cut(s) 129, 278, 578, 1041
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 531, 938
TspGWI ACGGA 2 cut(s) 222, 493
TspRI CASTG 1 cut(s) 499
Tth111I GACNNNGTC 1 cut(s) 1067
VpaK11BI GGWCC 2 cut(s) 85, 737
XagI CCTNNNNNAGG 1 cut(s) 467
XceI RCATGY 3 cut(s) 252, 697, 888
XmnI GAANNNNTTC 1 cut(s) 819
XspI CTAG 2 cut(s) 566, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.