Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014014

Physical Location & Seq

Genomic Coordinates Reverse (-)

16696465 .. 16699443

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13750.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCCGAAGATTCCAGAGCCATTGTATCATGGCGGAGCATCCCGAGCCTCAACGCCTCCCGCTGCGCCCTCACCGACGCCGCGGACCGCCACGAAACGCTGTGGACGACCGCGCAGCTCAGCTTCAGCAGCGGCGGCGGTACTCGGTACAATTTCGCCTGCATTTCGGTGGCGGAAAGGGGAGAACAGAGGAACGAGTTTTCGCCGACCTCGGCTCAGCTGTTGAAGCATCCGTTGGCTATTCTCGCATGCGTGCCCAAAGACGTTGCTCTGTTTGCTGCCGGAGCCGTCGCTGGAGCCGCCGCTAAGAGCGTCACGGCTCCGCTTGACCGCATCAAGATTCTTATGCAGACTCATGGCGTGCGAGTTGGGCAACAAAGCGCTAAGAAGGCTATCAGTTTTGTCGAGGCTATAACAATGATAGGGAAGGAAGAAGGGATTAAAGGGTACTGGAAAGGCAACCTTCCTCAGGTGATACGGATTCTCCCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAGCTTACAAGAAACTCTTTAGGGGCAAAGATGGTGAGCTATCTCTTCTAGGAAGACTTGCAGCAGGTGCTTGTGCTGGCATGACATCCACCTTTGTAACATATCCATTGGATGTTCTGAGGTTGCGCCTAGCAGTTGAACCAGGGTACCGAACTATGTCTGAGATTGCCTTAAACATGCTAAAAGAGGAAGGAGTTGCATCCTTCTACTATGGTCTTGGACCTTCTCTGATTGGAATTGCTCCATATATTGCTATGAACTTTTGCATTTTTGACTTGGTGAAGAAGTCTCTACCGGAGGATTTTCAAAAGAAAGCTGAAGCATCTCTATTAACGGGTTTGGTATCAGCTTCCCTTGCCACACTCACATGTTATCCTTTGGACACTGTGAGAAGACAGATGCAAATGAAGGGCACACCTTACAAGTCGGTTTTGGATGCCATTCCAGGTATTGTGGAGCGTGATGGACTTGTAGGCTTATATAGGGGTTTCTTGCCTAATGCTTTGAAAACTTTACCGAACAGCAGCATTAGGCTCACTACTTACGACATGGTCAAGCATCTCATTTCAACCAGCCAAAAAGAGTTTCAGAGAATTGTGGAGGAAAATCGCAGTAAACACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006091 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009765 GO:0009941 GO:0009987 GO:0010117 GO:0010206 GO:0015075 GO:0015215 GO:0015216 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0015979 GO:0016020 GO:0016021 GO:0019538 GO:0019684 GO:0019866 GO:0022857 GO:0030091 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901564 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

381

Amino Acids

41.49

Weight (kDa)

9.35

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51870
fragaria_vesca	FvH4_6g11494
malus_domestica	MD04G1151500.v1.1 MD12G1165700.v1.1
prunus_persica	Prupe.6G276700_v2.0.a1
pyrus_communis	pycom04g13750 pycom12g15820
rosa_chinensis	RchiOBHm_Chr3g0463201
rosa_laevigata	RLG00000024803
rosa_multiflora	Rmu_sc0008079.1_g000010 Rmu_sc0022743.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416810
rosa_rugosa	Rorug03G0062300
rosa_samantha	Rh3AG120500 Rh3BG124900 Rh3CG127000
rosa_wichuraiana	Rw3G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	572
Acc65I	GGTACC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	663
AccII	CGCG	2 cut(s)	83, 113
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	109, 855
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	4 cut(s)	142, 149, 449, 665
AfeI	AGCGCT	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	469
AflIII	ACRYGT	1 cut(s)	884
AgsI	TTSAA	5 cut(s)	226, 656, 824, 1024, 1086
AjnI	CCWGG	2 cut(s)	658, 961
AjuI	GAANNNNNNNTTGG	4 cut(s)	218, 250, 1086, 1118
AluBI	AGCT	8 cut(s)	118, 123, 220, 505, 521, 556, 833, 866
AluI	AGCT	8 cut(s)	118, 123, 220, 505, 521, 556, 833, 866
Alw26I	GTCTC	1 cut(s)	810
Ama87I	CYCGRG	1 cut(s)	43
Aor51HI	AGCGCT	1 cut(s)	382
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	6 cut(s)	63, 115, 129, 278, 578, 1041
Asp718I	GGTACC	1 cut(s)	663
AspLEI	GCGC	4 cut(s)	68, 115, 383, 645
AspS9I	GGNCC	2 cut(s)	85, 737
AsuHPI	GGTGA	4 cut(s)	64, 484, 563, 808
AvaI	CYCGRG	1 cut(s)	43
AvaII	GGWCC	2 cut(s)	85, 737
AxyI	CCTNAGG	1 cut(s)	468
BaeGI	GKGCMC	2 cut(s)	258, 932
BaeI	ACNNNNGTAYC	2 cut(s)	647, 680
BanI	GGYRCC	1 cut(s)	663
BbsI	GAAGAC	2 cut(s)	577, 916
BbvI	GCAGC	6 cut(s)	50, 127, 141, 265, 590, 1053
BccI	CCATC	2 cut(s)	542, 974
BceAI	ACGGC	2 cut(s)	272, 333
BciT130I	CCWGG	2 cut(s)	660, 963
BcoDI	GTCTC	1 cut(s)	810
BfaI	CTAG	2 cut(s)	566, 647
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	572
BlpI	GCTNAGC	2 cut(s)	119, 216
Bme1390I	CCNGG	2 cut(s)	660, 963
Bme18I	GGWCC	2 cut(s)	85, 737
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	85, 737
BmiI	GGNNCC	4 cut(s)	286, 298, 321, 665
BmrFI	CCNGG	2 cut(s)	660, 963
BmsI	GCATC	8 cut(s)	48, 238, 342, 725, 848, 906, 943, 1084
BpiI	GAAGAC	2 cut(s)	577, 916
BpmI	CTGGAG	1 cut(s)	315
Bpu1102I	GCTNAGC	2 cut(s)	119, 216
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	81, 210, 659
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	455
Bse21I	CCTNAGG	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	660, 963
BseDI	CCNNGG	3 cut(s)	81, 210, 659
BseGI	GGATG	6 cut(s)	39, 229, 602, 634, 716, 958
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMII	CTCAG	5 cut(s)	133, 230, 482, 626, 669
BseNI	ACTGG	1 cut(s)	455
BseSI	GKGCMC	2 cut(s)	258, 932
BseXI	GCAGC	6 cut(s)	50, 127, 141, 265, 590, 1053
Bsh1236I	CGCG	2 cut(s)	83, 113
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	663
BsiEI	CGRYCG	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	282, 812
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	810
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	258, 932
Bsp1720I	GCTNAGC	2 cut(s)	119, 216
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	5 cut(s)	132, 229, 481, 627, 670
BspFNI	CGCG	2 cut(s)	83, 113
BspLI	GGNNCC	4 cut(s)	286, 298, 321, 665
BspMI	ACCTGC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	81, 210, 659
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	660, 963
Bst4CI	ACNGT	3 cut(s)	494, 904, 1139
Bst6I	CTCTTC	1 cut(s)	567
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	5 cut(s)	160, 250, 254, 362, 595
BstDEI	CTNAG	7 cut(s)	119, 216, 306, 384, 468, 635, 678
BstDSI	CCRYGG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	6 cut(s)	39, 229, 602, 634, 716, 958
BstFNI	CGCG	2 cut(s)	83, 113
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	4 cut(s)	68, 115, 383, 645
BstMAI	GTCTC	1 cut(s)	810
BstMCI	CGRYCG	1 cut(s)	111
BstNI	CCWGG	2 cut(s)	660, 963
BstNSI	RCATGY	3 cut(s)	252, 697, 888
BstSCI	CCNGG	2 cut(s)	658, 961
BstSLI	GKGCMC	2 cut(s)	258, 932
BstUI	CGCG	2 cut(s)	83, 113
BstV1I	GCAGC	6 cut(s)	50, 127, 141, 265, 590, 1053
BstV2I	GAAGAC	2 cut(s)	577, 916
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	6 cut(s)	39, 229, 602, 634, 716, 958
BtsIMutI	CAGTG	2 cut(s)	499, 900
BveI	ACCTGC	1 cut(s)	572
Cac8I	GCNNGC	5 cut(s)	160, 250, 254, 362, 595
CfoI	GCGC	4 cut(s)	68, 115, 383, 645
Cfr13I	GGNCC	2 cut(s)	85, 737
Cfr42I	CCGCGG	1 cut(s)	84
CpoI	CGGWCCG	1 cut(s)	85
CseI	GACGC	2 cut(s)	86, 301
Csp6I	GTAC	4 cut(s)	141, 148, 448, 664
CspI	CGGWCCG	1 cut(s)	85
CviAII	CATG	7 cut(s)	30, 249, 356, 598, 694, 885, 1066
CviQI	GTAC	4 cut(s)	141, 148, 448, 664
DdeI	CTNAG	7 cut(s)	119, 216, 306, 384, 468, 635, 678
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
EciI	GGCGGA	2 cut(s)	49, 188
Eco47I	GGWCC	2 cut(s)	85, 737
Eco47III	AGCGCT	1 cut(s)	382
Eco57I	CTGAAG	2 cut(s)	109, 855
Eco81I	CCTNAGG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	658, 961
FaeI	CATG	7 cut(s)	33, 252, 359, 601, 697, 888, 1069
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 518, 550
FatI	CATG	7 cut(s)	29, 248, 355, 597, 693, 884, 1065
FauI	CCCGC	1 cut(s)	68
FokI	GGATG	6 cut(s)	26, 216, 589, 641, 703, 965
FspBI	CTAG	2 cut(s)	566, 647
GlaI	GCGC	4 cut(s)	67, 114, 382, 644
GsuI	CTGGAG	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	282, 812
HgaI	GACGC	2 cut(s)	86, 301
HhaI	GCGC	4 cut(s)	68, 115, 383, 645
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	7 cut(s)	33, 252, 359, 601, 697, 888, 1069
Hin6I	GCGC	4 cut(s)	66, 113, 381, 643
HinP1I	GCGC	4 cut(s)	66, 113, 381, 643
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	4 cut(s)	11, 340, 352, 481
HpaII	CCGG	2 cut(s)	282, 812
HphI	GGTGA	4 cut(s)	64, 484, 563, 808
Hpy166II	GTNNAC	2 cut(s)	105, 1133
Hpy188I	TCNGA	4 cut(s)	636, 679, 747, 1107
Hpy188III	TCNNGA	3 cut(s)	15, 43, 337
Hpy8I	GTNNAC	2 cut(s)	105, 1133
Hpy99I	CGWCG	2 cut(s)	80, 293
HpyAV	CCTTC	8 cut(s)	382, 421, 428, 473, 701, 730, 750, 919
HpyCH4III	ACNGT	3 cut(s)	494, 904, 1139
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	6 cut(s)	162, 349, 578, 716, 783, 919
HpyF3I	CTNAG	7 cut(s)	119, 216, 306, 384, 468, 635, 678
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	7 cut(s)	33, 252, 359, 601, 697, 888, 1069
HspAI	GCGC	4 cut(s)	66, 113, 381, 643
KpnI	GGTACC	1 cut(s)	667
KspI	CCGCGG	1 cut(s)	84
LmnI	GCTCC	6 cut(s)	36, 284, 296, 325, 763, 973
Lsp1109I	GCAGC	6 cut(s)	50, 127, 141, 265, 590, 1053
LweI	GCATC	8 cut(s)	48, 238, 342, 725, 848, 906, 943, 1084
MaeI	CTAG	2 cut(s)	566, 647
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	313, 613
MboII	GAAGA	6 cut(s)	20, 443, 554, 582, 811, 921
MhlI	GDGCHC	2 cut(s)	258, 932
MluCI	AATT	3 cut(s)	151, 753, 1110
MlyI	GAGTC	1 cut(s)	346
MseI	TTAA	4 cut(s)	441, 689, 848, 1141
MslI	CAYNNNNRTG	2 cut(s)	167, 883
MspA1I	CMGCKG	4 cut(s)	63, 83, 132, 220
MspI	CCGG	2 cut(s)	282, 812
MspR9I	CCNGG	2 cut(s)	660, 963
MvaI	CCWGG	2 cut(s)	660, 963
MvnI	CGCG	2 cut(s)	83, 113
NlaIII	CATG	7 cut(s)	33, 252, 359, 601, 697, 888, 1069
NlaIV	GGNNCC	4 cut(s)	286, 298, 321, 665
NmeAIII	GCCGAG	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	3 cut(s)	252, 697, 888
PaeI	GCATGC	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	572
PciI	ACATGT	1 cut(s)	884
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PfeI	GAWTC	3 cut(s)	11, 340, 481
PflFI	GACNNNGTC	1 cut(s)	1067
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PscI	ACATGT	1 cut(s)	884
Psp6I	CCWGG	2 cut(s)	658, 961
PspGI	CCWGG	2 cut(s)	658, 961
PspN4I	GGNNCC	4 cut(s)	286, 298, 321, 665
PspPI	GGNCC	2 cut(s)	85, 737
PsyI	GACNNNGTC	1 cut(s)	1067
PvuII	CAGCTG	1 cut(s)	220
RsaI	GTAC	4 cut(s)	142, 149, 449, 665
RsaNI	GTAC	4 cut(s)	141, 148, 448, 664
RseI	CAYNNNNRTG	2 cut(s)	167, 883
Rsr2I	CGGWCCG	1 cut(s)	85
RsrII	CGGWCCG	1 cut(s)	85
SacII	CCGCGG	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	441, 689, 848, 1141
Sau96I	GGNCC	2 cut(s)	85, 737
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	660, 963
SduI	GDGCHC	2 cut(s)	258, 932
SfaNI	GCATC	8 cut(s)	48, 238, 342, 725, 848, 906, 943, 1084
Sfr303I	CCGCGG	1 cut(s)	84
SgrBI	CCGCGG	1 cut(s)	84
SinI	GGWCC	2 cut(s)	85, 737
SmiMI	CAYNNNNRTG	2 cut(s)	167, 883
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	3 cut(s)	151, 753, 1110
SspMI	CTAG	2 cut(s)	566, 647
StyD4I	CCNGG	2 cut(s)	658, 961
TaaI	ACNGT	3 cut(s)	494, 904, 1139
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	405
TasI	AATT	3 cut(s)	151, 753, 1110
TauI	GCSGC	5 cut(s)	83, 135, 138, 302, 305
TfiI	GAWTC	3 cut(s)	11, 340, 481
Tru1I	TTAA	4 cut(s)	441, 689, 848, 1141
Tru9I	TTAA	4 cut(s)	441, 689, 848, 1141
TscAI	CASTG	2 cut(s)	499, 907
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	6 cut(s)	63, 115, 129, 278, 578, 1041
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	531, 788, 938
TspGWI	ACGGA	2 cut(s)	222, 493
TspRI	CASTG	2 cut(s)	499, 907
Tth111I	GACNNNGTC	1 cut(s)	1067
VpaK11BI	GGWCC	2 cut(s)	85, 737
XagI	CCTNNNNNAGG	1 cut(s)	467
XceI	RCATGY	3 cut(s)	252, 697, 888
XspI	CTAG	2 cut(s)	566, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.