RLG00000024803

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
39223669 .. 39227546
3878 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024803

Sequence Viewer

Length: 1161 bp
ATGACCGAAGACCACCCCATTCTCTCATGGCGCCCCATCCCAGCCCTAACCCTAACCGCCTCCCACTCTCACTCTCACTCGCTTGACCACGACCCCCTCTGGAAGACCGCGCACCTGACTTACGGCGTCTCCACCGCCGGAACCGGCATTCGCTGTAAATTCGCTTGCCTTTCGGTGGCGGAGAAGCGCGAGCAGCACAAGGAGTTCTCGCCGTCGGCCGCTCAGCTCCTGAAGCATCCGCTGGCCATAATCGCTTGCGTCCCCAAGGACTTCGCGCTGTTCTGTGCTGGAGCTGTTGCCGGTGCGGCGGCGAAGACGGTCACGGCGCCGCTCGACCGCATCAAGATTCTTATGCAGACTCATGGGGTGCGAGTTGGGCAAGCAAGTGCTAAGAAGGCTATTGGTTTTGTTGAGGCCATAGCAATGATAGGGAAGGAAGAAGGGCTTAAAGGGTACTGGAAAGGCAACCTTCCTCAGGTGATACGGATTATCCCTTATAGTGCTGTTCAGCTTTTTGCTTATGAAGCTTACAAGAAATTCTTTACTGGAAAAGATGGTGAGCTCTCTCTTCTTGGAAGACTAGCAGCAGGGGCTTGTGCAGGGATGACATCCACTTTTGTCACTTATCCATTAGATGTCCTGAGGTTACGGTTAGCAGTTGAACCAGGGTGCCGAACTATGACTGAGATTGCCTTAAACATGCTAAGAGAGGAAGGATTTGCATCCTTCTATTATGGTCTTGGACCTTCTCTTATTGGAATAGCTCCATATATTGCTGTCAACTTTTGCGTTTTTGACTTGGTGAAAAAGTCTTTACCAGAGGAATTTCAAAAGAAAACTGAAGCATCTCTCTTGACGGGTTTGGTGTCAGCTTCCCTTGCCACACTCACATGCTATCCTTTAGACACTGTGAGAAGACAAATGCAAATGAGGGGCACTCCATACAAGACGGTTTTGGATGCAATTCCAGGCGTCGTGGCTCGTGATGGACTGATAGGCTTGTATAGGGGTTTCTTGCCTAATGCTTTGAAAACCCTACCAAACAGCAGCATTAGGCTTACCACTTACGACATGGTCAAACGTCTAATTGTGACCAGTCAGAAGGAGTTTCAGCGAATTGTGGACGAAAATTGCAATAAACAACAGCAGAAGGCTAGCTAA

Protein Analysis

387

Amino Acids

42.21

Weight (kDa)

9.33

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 92 - 184 1.3e-25 Mitochondrial carrier protein
Mito_carr PF00153 187 - 274 4.4e-21 Mitochondrial carrier protein
Mito_carr PF00153 282 - 365 7.1e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51870
fragaria_vesca FvH4_6g11494
malus_domestica MD04G1151500.v1.1 MD12G1165700.v1.1
prunus_persica Prupe.6G276700_v2.0.a1
pyrus_communis pycom04g13750 pycom12g15820
rosa_chinensis RchiOBHm_Chr3g0463201
rosa_laevigata RLG00000024803
rosa_multiflora Rmu_sc0008079.1_g000010 Rmu_sc0022743.1_g000002
rosa_roxburghii Rroxscaffold_6G00416810
rosa_rugosa Rorug03G0062300
rosa_samantha Rh3AG120500 Rh3BG124900 Rh3CG127000
rosa_wichuraiana Rw3G010230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 30, 325, 669
AccBSI CCGCTC 2 cut(s) 221, 331
AccII CGCG 3 cut(s) 110, 189, 275
AcoI YGGCCR 2 cut(s) 216, 243
AcsI RAATTY 3 cut(s) 158, 536, 824
AcuI CTGAAG 2 cut(s) 251, 861
AcyI GRCGYC 4 cut(s) 31, 126, 326, 972
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 2 cut(s) 175, 475
AgsI TTSAA 3 cut(s) 662, 830, 1030
AjnI CCWGG 2 cut(s) 664, 967
AluBI AGCT 8 cut(s) 226, 293, 511, 527, 562, 764, 872, 1158
AluI AGCT 8 cut(s) 226, 293, 511, 527, 562, 764, 872, 1158
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 1 cut(s) 133
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 3 cut(s) 216, 243, 414
ApeKI GCWGC 3 cut(s) 193, 584, 1047
ApoI RAATTY 3 cut(s) 158, 536, 824
AspLEI GCGC 5 cut(s) 33, 112, 189, 277, 328
AspS9I GGNCC 1 cut(s) 743
AsuHPI GGTGA 3 cut(s) 490, 569, 814
AsuNHI GCTAGC 1 cut(s) 1154
AvaII GGWCC 1 cut(s) 743
AxyI CCTNAGG 2 cut(s) 474, 641
BaeGI GKGCMC 1 cut(s) 938
BalI TGGCCA 1 cut(s) 245
BanI GGYRCC 3 cut(s) 30, 325, 669
BanII GRGCYC 1 cut(s) 564
BauI CACGAG 1 cut(s) 981
BbsI GAAGAC 5 cut(s) 15, 110, 320, 583, 922
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 3 cut(s) 205, 596, 1059
BccI CCATC 3 cut(s) 44, 548, 980
BceAI ACGGC 3 cut(s) 139, 196, 339
BciT130I CCWGG 2 cut(s) 666, 969
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 2 cut(s) 581, 1155
BfoI RGCGCY 2 cut(s) 34, 329
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 7 cut(s) 194, 219, 306, 309, 329, 585, 1048
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 7 cut(s) 195, 220, 307, 310, 330, 586, 1049
Bme1390I CCNGG 2 cut(s) 666, 969
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 4 cut(s) 32, 142, 327, 671
BmrFI CCNGG 2 cut(s) 666, 969
BmsI GCATC 5 cut(s) 244, 348, 731, 854, 949
BmtI GCTAGC 1 cut(s) 1158
BpiI GAAGAC 5 cut(s) 15, 110, 320, 583, 922
BplI GAGNNNNNCTC 2 cut(s) 922, 954
BpmI CTGGAG 1 cut(s) 309
Bpu1102I GCTNAGC 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 721
BsaHI GRCGYC 4 cut(s) 31, 126, 326, 972
BsaJI CCNNGG 2 cut(s) 264, 665
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 475
Bse118I RCCGGY 2 cut(s) 143, 299
Bse1I ACTGG 3 cut(s) 461, 550, 1095
Bse21I CCTNAGG 2 cut(s) 474, 641
Bse3DI GCAATG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 721
BseBI CCWGG 2 cut(s) 666, 969
BseDI CCNNGG 2 cut(s) 264, 665
BseGI GGATG 6 cut(s) 36, 235, 608, 609, 722, 964
BseJI GATNNNNATC 1 cut(s) 721
BseLI CCNNNNNNNGG 2 cut(s) 175, 475
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 4 cut(s) 236, 488, 632, 675
BseNI ACTGG 3 cut(s) 461, 550, 1095
BseSI GKGCMC 1 cut(s) 938
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 3 cut(s) 205, 596, 1059
BseYI CCCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 3 cut(s) 110, 189, 275
Bsh1285I CGRYCG 2 cut(s) 219, 337
BshFI GGCC 3 cut(s) 218, 245, 416
BshNI GGYRCC 3 cut(s) 30, 325, 669
BsiEI CGRYCG 2 cut(s) 219, 337
BsiHKAI GWGCWC 1 cut(s) 564
BsiSI CCGG 3 cut(s) 138, 144, 300
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 175, 475
BsmAI GTCTC 1 cut(s) 133
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 3 cut(s) 218, 245, 416
Bsp1286I GDGCHC 2 cut(s) 564, 938
Bsp1720I GCTNAGC 1 cut(s) 222
BspANI GGCC 3 cut(s) 218, 245, 416
BspCNI CTCAG 4 cut(s) 235, 487, 633, 676
BspFNI CGCG 3 cut(s) 110, 189, 275
BspLI GGNNCC 4 cut(s) 32, 142, 327, 671
BspOI GCTAGC 1 cut(s) 1158
BspT107I GGYRCC 3 cut(s) 30, 325, 669
BsrBI CCGCTC 2 cut(s) 221, 331
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 2 cut(s) 143, 299
BsrI ACTGG 3 cut(s) 461, 550, 1095
BssAI RCCGGY 2 cut(s) 143, 299
BssECI CCNNGG 2 cut(s) 264, 665
BssNI GRCGYC 4 cut(s) 31, 126, 326, 972
BssSI CACGAG 1 cut(s) 981
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 981
Bst2UI CCWGG 2 cut(s) 666, 969
Bst4CI ACNGT 4 cut(s) 319, 651, 910, 952
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 4 cut(s) 31, 126, 326, 972
BstC8I GCNNGC 6 cut(s) 166, 191, 243, 256, 381, 1156
BstDEI CTNAG 6 cut(s) 222, 390, 474, 641, 684, 704
BstENI CCTNNNNNAGG 1 cut(s) 473
BstF5I GGATG 6 cut(s) 36, 235, 608, 609, 722, 964
BstFNI CGCG 3 cut(s) 110, 189, 275
BstH2I RGCGCY 2 cut(s) 34, 329
BstHHI GCGC 5 cut(s) 33, 112, 189, 277, 328
BstMAI GTCTC 1 cut(s) 133
BstMCI CGRYCG 2 cut(s) 219, 337
BstMWI GCNNNNNNNGC 9 cut(s) 193, 232, 251, 305, 376, 395, 524, 590, 878
BstNI CCWGG 2 cut(s) 666, 969
BstNSI RCATGY 2 cut(s) 703, 894
BstSCI CCNGG 2 cut(s) 664, 967
BstSLI GKGCMC 1 cut(s) 938
BstUI CGCG 3 cut(s) 110, 189, 275
BstV1I GCAGC 3 cut(s) 205, 596, 1059
BstV2I GAAGAC 5 cut(s) 15, 110, 320, 583, 922
BstZI CGGCCG 1 cut(s) 216
Bsu36I CCTNAGG 2 cut(s) 474, 641
BsuRI GGCC 3 cut(s) 218, 245, 416
BtsCI GGATG 6 cut(s) 36, 235, 608, 609, 722, 964
BtsIMutI CAGTG 1 cut(s) 906
Cac8I GCNNGC 6 cut(s) 166, 191, 243, 256, 381, 1156
CaiI CAGNNNCTG 1 cut(s) 229
CfoI GCGC 5 cut(s) 33, 112, 189, 277, 328
Cfr10I RCCGGY 2 cut(s) 143, 299
Cfr13I GGNCC 1 cut(s) 743
CseI GACGC 3 cut(s) 115, 247, 961
Csp6I GTAC 1 cut(s) 454
CviAII CATG 5 cut(s) 27, 362, 700, 891, 1072
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 6 cut(s) 222, 390, 474, 641, 684, 704
DinI GGCGCC 2 cut(s) 32, 327
EaeI YGGCCR 2 cut(s) 216, 243
EagI CGGCCG 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
EciI GGCGGA 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 562
EclXI CGGCCG 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 743
Eco52I CGGCCG 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 2 cut(s) 251, 861
Eco81I CCTNAGG 2 cut(s) 474, 641
EcoICRI GAGCTC 1 cut(s) 562
EcoNI CCTNNNNNAGG 1 cut(s) 473
EcoRII CCWGG 2 cut(s) 664, 967
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 564
EgeI GGCGCC 2 cut(s) 32, 327
EheI GGCGCC 2 cut(s) 32, 327
ErhI CCWWGG 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 5 cut(s) 30, 365, 703, 894, 1075
FalI AAGNNNNNCTT 6 cut(s) 429, 461, 453, 485, 524, 556
FaqI GGGAC 1 cut(s) 245
FatI CATG 5 cut(s) 26, 361, 699, 890, 1071
Fnu4HI GCNGC 7 cut(s) 194, 219, 306, 309, 329, 585, 1048
FokI GGATG 6 cut(s) 23, 222, 595, 616, 709, 971
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 7 cut(s) 194, 219, 306, 309, 329, 585, 1048
FspBI CTAG 2 cut(s) 581, 1155
GlaI GCGC 5 cut(s) 32, 111, 188, 276, 327
GluI GCNGC 7 cut(s) 194, 219, 306, 309, 329, 585, 1048
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 309
HaeII RGCGCY 2 cut(s) 34, 329
HaeIII GGCC 3 cut(s) 218, 245, 416
HapII CCGG 3 cut(s) 138, 144, 300
HgaI GACGC 3 cut(s) 115, 247, 961
HhaI GCGC 5 cut(s) 33, 112, 189, 277, 328
Hin1I GRCGYC 4 cut(s) 31, 126, 326, 972
Hin1II CATG 5 cut(s) 30, 365, 703, 894, 1075
Hin6I GCGC 5 cut(s) 31, 110, 187, 275, 326
HinP1I GCGC 5 cut(s) 31, 110, 187, 275, 326
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 2 cut(s) 346, 358
HpaII CCGG 3 cut(s) 138, 144, 300
HphI GGTGA 3 cut(s) 490, 569, 814
Hpy166II GTNNAC 2 cut(s) 781, 1123
Hpy188I TCNGA 1 cut(s) 1101
Hpy188III TCNNGA 6 cut(s) 100, 229, 343, 640, 853, 983
Hpy8I GTNNAC 2 cut(s) 781, 1123
Hpy99I CGWCG 2 cut(s) 217, 977
HpyAV CCTTC 9 cut(s) 388, 427, 434, 479, 707, 736, 756, 1096, 1144
HpyCH4III ACNGT 4 cut(s) 319, 651, 910, 952
HpyCH4IV ACGT 1 cut(s) 1081
HpyCH4V TGCA 6 cut(s) 355, 599, 722, 925, 962, 1134
HpyF10VI GCNNNNNNNGC 9 cut(s) 193, 232, 251, 305, 376, 395, 524, 590, 878
HpyF3I CTNAG 6 cut(s) 222, 390, 474, 641, 684, 704
HpySE526I ACGT 1 cut(s) 1081
Hsp92I GRCGYC 4 cut(s) 31, 126, 326, 972
Hsp92II CATG 5 cut(s) 30, 365, 703, 894, 1075
HspAI GCGC 5 cut(s) 31, 110, 187, 275, 326
KasI GGCGCC 2 cut(s) 30, 325
LmnI GCTCC 3 cut(s) 231, 290, 769
Lsp1109I GCAGC 3 cut(s) 205, 596, 1059
LweI GCATC 5 cut(s) 244, 348, 731, 854, 949
MaeI CTAG 2 cut(s) 581, 1155
MaeII ACGT 1 cut(s) 1081
MaeIII GTNAC 4 cut(s) 319, 619, 645, 1090
MbiI CCGCTC 2 cut(s) 221, 331
MboII GAAGA 7 cut(s) 20, 115, 325, 449, 560, 588, 927
MhlI GDGCHC 2 cut(s) 564, 938
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 7 cut(s) 158, 536, 824, 963, 1086, 1116, 1129
MluNI TGGCCA 1 cut(s) 245
Mly113I GGCGCC 2 cut(s) 31, 326
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 8 cut(s) 70, 107, 406, 483, 636, 703, 814, 924
Mox20I TGGCCA 1 cut(s) 245
MscI TGGCCA 1 cut(s) 245
MseI TTAA 2 cut(s) 447, 695
MslI CAYNNNNRTG 2 cut(s) 422, 889
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 3 cut(s) 138, 144, 300
MspR9I CCNGG 2 cut(s) 666, 969
Mva1269I GAATGC 1 cut(s) 147
MvaI CCWGG 2 cut(s) 666, 969
MvnI CGCG 3 cut(s) 110, 189, 275
MwoI GCNNNNNNNGC 9 cut(s) 193, 232, 251, 305, 376, 395, 524, 590, 878
NarI GGCGCC 2 cut(s) 31, 326
NheI GCTAGC 1 cut(s) 1154
NlaIII CATG 5 cut(s) 30, 365, 703, 894, 1075
NlaIV GGNNCC 4 cut(s) 32, 142, 327, 671
NmuCI GTSAC 3 cut(s) 319, 619, 1090
NspI RCATGY 2 cut(s) 703, 894
PctI GAATGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 346
PflFI GACNNNGTC 1 cut(s) 1073
PkrI GCNGC 7 cut(s) 195, 220, 307, 310, 330, 586, 1049
PleI GAGTC 1 cut(s) 352
PluTI GGCGCC 2 cut(s) 34, 329
PpsI GAGTC 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 564
Psp6I CCWGG 2 cut(s) 664, 967
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 664, 967
PspN4I GGNNCC 4 cut(s) 32, 142, 327, 671
PspPI GGNCC 1 cut(s) 743
PstNI CAGNNNCTG 1 cut(s) 229
PsyI GACNNNGTC 1 cut(s) 1073
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 2 cut(s) 422, 889
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 2 cut(s) 447, 695
SatI GCNGC 7 cut(s) 194, 219, 306, 309, 329, 585, 1048
Sau96I GGNCC 1 cut(s) 743
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 666, 969
SduI GDGCHC 2 cut(s) 564, 938
SfaNI GCATC 5 cut(s) 244, 348, 731, 854, 949
SfoI GGCGCC 2 cut(s) 32, 327
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 2 cut(s) 422, 889
Sse9I AATT 7 cut(s) 158, 536, 824, 963, 1086, 1116, 1129
SspDI GGCGCC 2 cut(s) 30, 325
SspMI CTAG 2 cut(s) 581, 1155
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 664, 967
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 4 cut(s) 319, 651, 910, 952
TaiI ACGT 1 cut(s) 1084
TaqI TCGA 1 cut(s) 333
TaqII GACCGA 1 cut(s) 20
TasI AATT 7 cut(s) 158, 536, 824, 963, 1086, 1116, 1129
TauI GCSGC 4 cut(s) 221, 308, 311, 331
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 447, 695
Tru9I TTAA 2 cut(s) 447, 695
TscAI CASTG 1 cut(s) 913
TseFI GTSAC 3 cut(s) 319, 619, 1090
TseI GCWGC 3 cut(s) 193, 584, 1047
Tsp45I GTSAC 3 cut(s) 319, 619, 1090
TspDTI ATGAA 1 cut(s) 537
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 1 cut(s) 913
Tth111I GACNNNGTC 1 cut(s) 1073
VpaK11BI GGWCC 1 cut(s) 743
XagI CCTNNNNNAGG 1 cut(s) 473
XapI RAATTY 3 cut(s) 158, 536, 824
XceI RCATGY 2 cut(s) 703, 894
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XspI CTAG 2 cut(s) 581, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.