Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014014

Physical Location & Seq

Genomic Coordinates Reverse (-)

24657099 .. 24660696

Gene Structure 3598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1165700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCCGGAGATTCCAGAGCCATTGTATCATGGCGGAGCATCCCGAGCCTCAACGCCTCCCGCTGCGCCCTCACCGACGCCGCGGACCACCACGAACCGCTGTGGACGACCGCGCAGCTCAGCTTCAGCAGCGGCCGTGGAATTCGGTGCAATTTCGCCTGCGTTTCGGTGGCGGAAAGGGGAGAACAAAGGAACGAGTTTTTGCCGACCTCGGCTCAGCTGTTGAAGCATCCTTTGGCTATTCTCGCATGCGTGCCCAAAGACGTTGCGCTATTTGCTGCCGGAGCCGTCGCTGGAGCCGCCGCTAAGAGCGTCACGGCTCCGCTTGACCGCATCAAGATTCTTATGCAGACTCATGGGGTGCGAGTTGGGCAACAAAGCGCTAAGAAGGCGATCAGTTTTCTCGAGGCCATAACAATGATAGGGAAGGAAGAAGGGATTAAAGGGTACTGGAAAGGCAACCTTCCTCAGGTGATACGGATTATCCCTTATAGTGCTGTTCAGCTTTTTGCTTATGAAGCTTATAAGAAACTCTTTAGGGGCAAAGATGGTGAGCTATCGCTTCTGGGAAGACTTGCAGCGGGTGCTTGTGCGGGCATGACATCCACTTTTGTAACATACCCATTGGATGTCCTGAGGTTGCGCTTAGCAGTTGAACCAGGGTATCGAACTATGTCTGAGATTGCCTTAAACATGCTAAAAGAGGAAGGAGTTGCATCCTTCTACTATGGTCTTGGACCTTCTCTTATTGGAATTGCTCCATATATTGCTGTGAACTTTTGCATTTTTGACTTGGTGAAGAAGTCTTTACCGGAGGATTTTCAAAAGAAAGCTGAAGCATCTCTATTAACGGGTTTGGTGGCAGCTTCCTTTGCCACACTCACTTGTTATCCTTTGGATACTGTCAGAAGGCAGATGCAAATGAAGGGCACACCTTACAAGACAGTTTTGGATGCCATTCCAGGTATTGTGGAGCGTGATGGACTTGTAGGTTTATATAGGGGTTTCTTGCCTAATGCTTTGAAAACTTTACCGAACAGCAGCATTAGGCTCACAACTTATGACATGGTCAAGCGTCTCATTGCGACCAGTGAAAAGGAGTTTCAGAGAATTGTGGAGGAAAATCGCAGTAAACACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006091 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009765 GO:0009941 GO:0009987 GO:0010117 GO:0010206 GO:0015075 GO:0015215 GO:0015216 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0015979 GO:0016020 GO:0016021 GO:0019538 GO:0019684 GO:0019866 GO:0022857 GO:0030091 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901564 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

381

Amino Acids

41.52

Weight (kDa)

9.38

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	90 - 182	1.1e-25	Mitochondrial carrier protein
Mito_carr	PF00153	185 - 272	1.5e-20	Mitochondrial carrier protein
Mito_carr	PF00153	280 - 363	1.3e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51870
fragaria_vesca	FvH4_6g11494
malus_domestica	MD04G1151500.v1.1 MD12G1165700.v1.1
prunus_persica	Prupe.6G276700_v2.0.a1
pyrus_communis	pycom04g13750 pycom12g15820
rosa_chinensis	RchiOBHm_Chr3g0463201
rosa_laevigata	RLG00000024803
rosa_multiflora	Rmu_sc0008079.1_g000010 Rmu_sc0022743.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416810
rosa_rugosa	Rorug03G0062300
rosa_samantha	Rh3AG120500 Rh3BG124900 Rh3CG127000
rosa_wichuraiana	Rw3G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AccII	CGCG	2 cut(s)	83, 113
AcoI	YGGCCR	2 cut(s)	3, 133
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	2 cut(s)	109, 855
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	449
AfeI	AGCGCT	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	4 cut(s)	226, 656, 824, 1024
AjnI	CCWGG	2 cut(s)	658, 961
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	8 cut(s)	118, 123, 220, 505, 521, 556, 833, 866
AluI	AGCT	8 cut(s)	118, 123, 220, 505, 521, 556, 833, 866
Alw26I	GTCTC	1 cut(s)	1082
Ama87I	CYCGRG	2 cut(s)	43, 404
Aor51HI	AGCGCT	1 cut(s)	382
AoxI	GGCC	3 cut(s)	3, 133, 408
ApeKI	GCWGC	7 cut(s)	63, 115, 129, 278, 578, 863, 1041
ApoI	RAATTY	1 cut(s)	141
AspLEI	GCGC	5 cut(s)	68, 115, 271, 383, 645
AspS9I	GGNCC	2 cut(s)	85, 737
AsuHPI	GGTGA	4 cut(s)	64, 484, 563, 808
AvaI	CYCGRG	2 cut(s)	43, 404
AvaII	GGWCC	2 cut(s)	85, 737
AxyI	CCTNAGG	2 cut(s)	468, 635
BaeGI	GKGCMC	2 cut(s)	258, 932
BaeI	ACNNNNGTAYC	2 cut(s)	647, 680
BbsI	GAAGAC	1 cut(s)	577
BbvI	GCAGC	7 cut(s)	50, 127, 141, 265, 590, 875, 1053
BccI	CCATC	2 cut(s)	542, 974
BceAI	ACGGC	3 cut(s)	120, 272, 333
BciT130I	CCWGG	2 cut(s)	660, 963
BciVI	GTATCC	1 cut(s)	892
BcoDI	GTCTC	1 cut(s)	1082
BfoI	RGCGCY	1 cut(s)	384
BfuI	GTATCC	1 cut(s)	892
BlpI	GCTNAGC	3 cut(s)	119, 216, 646
Bme1390I	CCNGG	2 cut(s)	660, 963
Bme18I	GGWCC	2 cut(s)	85, 737
BmeT110I	CYCGRG	2 cut(s)	43, 404
BmgT120I	GGNCC	2 cut(s)	85, 737
BmiI	GGNNCC	3 cut(s)	286, 298, 321
BmrFI	CCNGG	2 cut(s)	660, 963
BmsI	GCATC	7 cut(s)	48, 238, 342, 725, 848, 906, 943
BpiI	GAAGAC	1 cut(s)	577
BpmI	CTGGAG	1 cut(s)	315
Bpu1102I	GCTNAGC	3 cut(s)	119, 216, 646
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	4 cut(s)	81, 136, 210, 659
BsaWI	WCCGGW	1 cut(s)	811
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	455, 1089
Bse21I	CCTNAGG	2 cut(s)	468, 635
Bse3DI	GCAATG	1 cut(s)	1080
BseBI	CCWGG	2 cut(s)	660, 963
BseDI	CCNNGG	4 cut(s)	81, 136, 210, 659
BseGI	GGATG	6 cut(s)	39, 229, 602, 634, 716, 958
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	5 cut(s)	133, 230, 482, 626, 669
BseNI	ACTGG	2 cut(s)	455, 1089
BseSI	GKGCMC	2 cut(s)	258, 932
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	7 cut(s)	50, 127, 141, 265, 590, 875, 1053
Bsh1236I	CGCG	2 cut(s)	83, 113
Bsh1285I	CGRYCG	2 cut(s)	111, 136
BshFI	GGCC	3 cut(s)	5, 135, 410
BsiEI	CGRYCG	2 cut(s)	111, 136
BsiHKCI	CYCGRG	2 cut(s)	43, 404
BsiSI	CCGG	3 cut(s)	6, 282, 812
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	1082
BsmBI	CGTCTC	1 cut(s)	1082
BsnI	GGCC	3 cut(s)	5, 135, 410
BsoBI	CYCGRG	2 cut(s)	43, 404
Bsp1286I	GDGCHC	2 cut(s)	258, 932
Bsp143I	GATC	1 cut(s)	393
Bsp1720I	GCTNAGC	3 cut(s)	119, 216, 646
BspANI	GGCC	3 cut(s)	5, 135, 410
BspCNI	CTCAG	5 cut(s)	132, 229, 481, 627, 670
BspFNI	CGCG	2 cut(s)	83, 113
BspLI	GGNNCC	3 cut(s)	286, 298, 321
BsrDI	GCAATG	1 cut(s)	1080
BsrI	ACTGG	2 cut(s)	455, 1089
BssECI	CCNNGG	4 cut(s)	81, 136, 210, 659
BssMI	GATC	1 cut(s)	393
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	660, 963
Bst4CI	ACNGT	2 cut(s)	904, 946
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	4 cut(s)	160, 250, 254, 595
BstDEI	CTNAG	8 cut(s)	119, 216, 306, 384, 468, 635, 646, 678
BstDSI	CCRYGG	2 cut(s)	81, 136
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	6 cut(s)	39, 229, 602, 634, 716, 958
BstFNI	CGCG	2 cut(s)	83, 113
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	5 cut(s)	68, 115, 271, 383, 645
BstKTI	GATC	1 cut(s)	396
BstMAI	GTCTC	1 cut(s)	1082
BstMBI	GATC	1 cut(s)	393
BstMCI	CGRYCG	2 cut(s)	111, 136
BstNI	CCWGG	2 cut(s)	660, 963
BstNSI	RCATGY	2 cut(s)	252, 697
BstSCI	CCNGG	2 cut(s)	658, 961
BstSLI	GKGCMC	2 cut(s)	258, 932
BstUI	CGCG	2 cut(s)	83, 113
BstV1I	GCAGC	7 cut(s)	50, 127, 141, 265, 590, 875, 1053
BstV2I	GAAGAC	1 cut(s)	577
BstZI	CGGCCG	1 cut(s)	133
Bsu36I	CCTNAGG	2 cut(s)	468, 635
BsuI	GTATCC	1 cut(s)	892
BsuRI	GGCC	3 cut(s)	5, 135, 410
BtgI	CCRYGG	2 cut(s)	81, 136
BtsCI	GGATG	6 cut(s)	39, 229, 602, 634, 716, 958
BtsIMutI	CAGTG	1 cut(s)	1096
Cac8I	GCNNGC	4 cut(s)	160, 250, 254, 595
CfoI	GCGC	5 cut(s)	68, 115, 271, 383, 645
Cfr13I	GGNCC	2 cut(s)	85, 737
Cfr42I	CCGCGG	1 cut(s)	84
CseI	GACGC	3 cut(s)	86, 301, 1064
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	6 cut(s)	30, 249, 356, 598, 694, 1066
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	8 cut(s)	119, 216, 306, 384, 468, 635, 646, 678
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
EaeI	YGGCCR	2 cut(s)	3, 133
EagI	CGGCCG	1 cut(s)	133
EciI	GGCGGA	2 cut(s)	49, 188
EclXI	CGGCCG	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	85, 737
Eco47III	AGCGCT	1 cut(s)	382
Eco52I	CGGCCG	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	109, 855
Eco81I	CCTNAGG	2 cut(s)	468, 635
Eco88I	CYCGRG	2 cut(s)	43, 404
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	658, 961
Esp3I	CGTCTC	1 cut(s)	1082
FaeI	CATG	6 cut(s)	33, 252, 359, 601, 697, 1069
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 518, 550
FatI	CATG	6 cut(s)	29, 248, 355, 597, 693, 1065
FauI	CCCGC	3 cut(s)	68, 574, 586
FokI	GGATG	6 cut(s)	26, 216, 589, 641, 703, 965
GlaI	GCGC	5 cut(s)	67, 114, 270, 382, 644
GsuI	CTGGAG	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	5, 135, 410
HapII	CCGG	3 cut(s)	6, 282, 812
HgaI	GACGC	3 cut(s)	86, 301, 1064
HhaI	GCGC	5 cut(s)	68, 115, 271, 383, 645
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	6 cut(s)	33, 252, 359, 601, 697, 1069
Hin6I	GCGC	5 cut(s)	66, 113, 269, 381, 643
HinP1I	GCGC	5 cut(s)	66, 113, 269, 381, 643
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	3 cut(s)	11, 340, 352
HpaII	CCGG	3 cut(s)	6, 282, 812
HphI	GGTGA	4 cut(s)	64, 484, 563, 808
Hpy166II	GTNNAC	3 cut(s)	105, 775, 1133
Hpy188I	TCNGA	3 cut(s)	679, 908, 1107
Hpy188III	TCNNGA	5 cut(s)	15, 43, 337, 404, 634
Hpy8I	GTNNAC	3 cut(s)	105, 775, 1133
Hpy99I	CGWCG	2 cut(s)	80, 293
HpyAV	CCTTC	9 cut(s)	382, 421, 428, 473, 701, 730, 750, 903, 919
HpyCH4III	ACNGT	2 cut(s)	904, 946
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	6 cut(s)	150, 349, 578, 716, 783, 919
HpyF3I	CTNAG	8 cut(s)	119, 216, 306, 384, 468, 635, 646, 678
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	6 cut(s)	33, 252, 359, 601, 697, 1069
HspAI	GCGC	5 cut(s)	66, 113, 269, 381, 643
KspI	CCGCGG	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	6 cut(s)	36, 284, 296, 325, 763, 973
Lsp1109I	GCAGC	7 cut(s)	50, 127, 141, 265, 590, 875, 1053
LweI	GCATC	7 cut(s)	48, 238, 342, 725, 848, 906, 943
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	313, 613
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	3 cut(s)	443, 582, 811
MhlI	GDGCHC	2 cut(s)	258, 932
MluCI	AATT	4 cut(s)	141, 151, 753, 1110
MlyI	GAGTC	1 cut(s)	346
MseI	TTAA	4 cut(s)	441, 689, 848, 1141
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	6 cut(s)	63, 83, 100, 132, 220, 581
MspI	CCGG	3 cut(s)	6, 282, 812
MspR9I	CCNGG	2 cut(s)	660, 963
MvaI	CCWGG	2 cut(s)	660, 963
MvnI	CGCG	2 cut(s)	83, 113
NdeII	GATC	1 cut(s)	393
NlaIII	CATG	6 cut(s)	33, 252, 359, 601, 697, 1069
NlaIV	GGNNCC	3 cut(s)	286, 298, 321
NmeAIII	GCCGAG	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	2 cut(s)	252, 697
PaeI	GCATGC	1 cut(s)	252
PaeR7I	CTCGAG	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	11, 340
PflFI	GACNNNGTC	1 cut(s)	1067
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PsiI	TTATAA	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	658, 961
PspGI	CCWGG	2 cut(s)	658, 961
PspN4I	GGNNCC	3 cut(s)	286, 298, 321
PspPI	GGNCC	2 cut(s)	85, 737
PsyI	GACNNNGTC	1 cut(s)	1067
PvuII	CAGCTG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	416
SacII	CCGCGG	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	441, 689, 848, 1141
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	2 cut(s)	85, 737
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	660, 963
SduI	GDGCHC	2 cut(s)	258, 932
SfaNI	GCATC	7 cut(s)	48, 238, 342, 725, 848, 906, 943
Sfr274I	CTCGAG	1 cut(s)	404
Sfr303I	CCGCGG	1 cut(s)	84
SgrBI	CCGCGG	1 cut(s)	84
SinI	GGWCC	2 cut(s)	85, 737
SlaI	CTCGAG	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	4 cut(s)	141, 151, 753, 1110
StyD4I	CCNGG	2 cut(s)	658, 961
TaaI	ACNGT	2 cut(s)	904, 946
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	405, 667
TasI	AATT	4 cut(s)	141, 151, 753, 1110
TauI	GCSGC	4 cut(s)	83, 135, 302, 305
TfiI	GAWTC	2 cut(s)	11, 340
Tru1I	TTAA	4 cut(s)	441, 689, 848, 1141
Tru9I	TTAA	4 cut(s)	441, 689, 848, 1141
TscAI	CASTG	1 cut(s)	1096
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	7 cut(s)	63, 115, 129, 278, 578, 863, 1041
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	531, 938
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	1 cut(s)	1096
Tth111I	GACNNNGTC	1 cut(s)	1067
VpaK11BI	GGWCC	2 cut(s)	85, 737
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	2 cut(s)	252, 697
XhoI	CTCGAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.