Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011036

Physical Location & Seq

Genomic Coordinates Forward (+)

19342014 .. 19343466

Gene Structure 1453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGACTTTCCTAACAAATGTTGTTTCAATCAAACCTACAATCTTCTCATTCCAGTCCGAATCCTTCACTCCTTTGCATACACGGGTCAATGTATTCTCCTCGAAACCCTTTCCTTCTCTCGCTGGAACTTTCTCCCGGAGCTCTAGAACGAGATTCATTCCTTATGCTGTAACGGAGACGGAAGAAAAACCCGCCGCTTTGGACCCTAGTTCAGAAGCTGCCAGGCGTGTGTATATCGGTAACATACCCAGGACGGTGACCAATGAGCAGCTCACTAAACTTGTTGAAGAACACGGTGCTGTTGAAAAAGTTCAGGTGATGTATGATAAGTATTCAGGAAGAAGCCGTCGATTTGGGTTTGCTACAATGAAATCAGTTGAAGATGCTAATGCTGTGGTTGAGAAATTGAATGGCAATACCGTTGAAGGGCGTGAGATAAAGGTTAACATTACAGAGAAACCTATAGCATCATCACCTGATTTATCAGTTCTTCAGTCTGAGGATTCAGCATTTGTAGATAGCCCTTACAAAGTGTATGTTGGGAATCTAGCAAAGACTGTTACAAAAGAGATGCTTGAGAATTTGTTTTCTGAGAAAGGGAAAGTAGTAAGTGCTAAGGTTTCAAGAGTACCTGGAACTTCCAAATCCACCGGGTTTGGATTCGTTACGTTTTCTTCTGAAGAAGATGTGGAAGCAGCCATTGTTGCTCTTAACAATTCGTTGCTGGAAGGACAGAAGATTCGGGTGAATAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0010029 GO:0010035 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047484 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055035 GO:0065007 GO:0080134 GO:0080148 GO:0097159 GO:1900140 GO:1901000 GO:1901001 GO:1901363 GO:1901700 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

253

Amino Acids

27.75

Weight (kDa)

8.94

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	78 - 148	6e-18	RNA recognition motif
RRM_1	PF00076	179 - 249	1.4e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52150 AT3G52150
fragaria_vesca	FvH4_7g00530 FvH4_7g00530
malus_domestica	MD02G1316800.v1.1 MD07G1005200.v1.1
prunus_persica	Prupe.2G007400_v2.0.a1
pyrus_communis	pycom02g26550 pycom07g00420
rosa_chinensis	RchiOBHm_Chr1g0314321
rosa_laevigata	RLG00000030766
rosa_multiflora	Rmu_sc0000343.1_g000012 Rmu_sc0002833.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331960
rosa_rugosa	Rorug01G0001000
rosa_samantha	Rh1AG010100 Rh1BG003000 Rh1CG010400 Rh1DG005500
rosa_wichuraiana	Rw1G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	195, 198
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	2 cut(s)	479, 702
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	1 cut(s)	429
AgsI	TTSAA	7 cut(s)	30, 290, 308, 383, 412, 428, 627
AjnI	CCWGG	3 cut(s)	224, 251, 634
AluBI	AGCT	3 cut(s)	144, 221, 274
AluI	AGCT	3 cut(s)	144, 221, 274
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	221, 271, 698
ApoI	RAATTY	1 cut(s)	583
ArsI	GACNNNNNNTTYG	2 cut(s)	726, 758
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	2 cut(s)	139, 655
AsuHPI	GGTGA	4 cut(s)	271, 331, 468, 760
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	208, 283, 710
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	3 cut(s)	226, 253, 636
BcnI	CCSGG	2 cut(s)	139, 655
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	3 cut(s)	147, 210, 551
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	4 cut(s)	198, 222, 272, 699
BlsI	GCNGC	4 cut(s)	199, 223, 273, 700
Bme1390I	CCNGG	5 cut(s)	139, 226, 253, 636, 655
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	5 cut(s)	139, 226, 253, 636, 655
BmsI	GCATC	3 cut(s)	376, 479, 564
Bpu10I	CCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	139, 655
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse1I	ACTGG	1 cut(s)	55
BseBI	CCWGG	3 cut(s)	226, 253, 636
BseDI	CCNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	492, 585
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	208, 283, 710
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	139, 654
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	146
BspACI	CCGC	2 cut(s)	195, 198
BspCNI	CTCAG	2 cut(s)	493, 586
BspLI	GGNNCC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	251
Bst2UI	CCWGG	3 cut(s)	226, 253, 636
Bst4CI	ACNGT	4 cut(s)	259, 299, 424, 562
BstDEI	CTNAG	4 cut(s)	501, 594, 618, 759
BstEII	GGTNACC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	1 cut(s)	707
BstNI	CCWGG	3 cut(s)	226, 253, 636
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	5 cut(s)	137, 224, 251, 634, 653
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	3 cut(s)	208, 283, 710
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	632
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviJI	RGCY	7 cut(s)	144, 221, 274, 348, 525, 701, 758
CviKI_1	RGCY	7 cut(s)	144, 221, 274, 348, 525, 701, 758
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	4 cut(s)	501, 594, 618, 759
Ecl136II	GAGCTC	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	144
Eco57I	CTGAAG	2 cut(s)	479, 702
Eco91I	GGTNACC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	144
EcoO65I	GGTNACC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	224, 251, 634
EcoT38I	GRGCYC	1 cut(s)	146
Esp3I	CGTCTC	1 cut(s)	173
FaiI	YATR	7 cut(s)	81, 168, 237, 248, 327, 467, 540
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	198, 222, 272, 699
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	198, 222, 272, 699
FspBI	CTAG	3 cut(s)	147, 210, 551
GluI	GCNGC	4 cut(s)	198, 222, 272, 699
HapII	CCGG	2 cut(s)	139, 654
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	6 cut(s)	62, 156, 506, 547, 663, 742
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	2 cut(s)	139, 654
HphI	GGTGA	4 cut(s)	271, 331, 468, 760
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	5 cut(s)	61, 217, 502, 595, 682
Hpy188III	TCNNGA	3 cut(s)	147, 339, 627
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	354
HpyAV	CCTTC	4 cut(s)	76, 126, 422, 725
HpyCH4III	ACNGT	4 cut(s)	259, 299, 424, 562
HpyCH4IV	ACGT	1 cut(s)	671
HpyCH4V	TGCA	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	707
HpyF3I	CTNAG	4 cut(s)	501, 594, 618, 759
HpySE526I	ACGT	1 cut(s)	671
KspAI	GTTAAC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	3 cut(s)	208, 283, 710
LweI	GCATC	3 cut(s)	376, 479, 564
MaeI	CTAG	3 cut(s)	147, 210, 551
MaeII	ACGT	1 cut(s)	671
MaeIII	GTNAC	5 cut(s)	172, 242, 259, 562, 667
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	3 cut(s)	407, 583, 718
MnlI	CCTC	2 cut(s)	112, 496
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	447, 714
MspI	CCGG	2 cut(s)	139, 654
MspR9I	CCNGG	5 cut(s)	139, 226, 253, 636, 655
MvaI	CCWGG	3 cut(s)	226, 253, 636
MwoI	GCNNNNNNNGC	1 cut(s)	707
NciI	CCSGG	2 cut(s)	139, 655
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	6 cut(s)	62, 156, 506, 547, 663, 742
PfoI	TCCNGGA	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	199, 223, 273, 700
Psp124BI	GAGCTC	1 cut(s)	146
Psp6I	CCWGG	3 cut(s)	224, 251, 634
PspEI	GGTNACC	1 cut(s)	259
PspGI	CCWGG	3 cut(s)	224, 251, 634
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
SacI	GAGCTC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	447, 714
SatI	GCNGC	4 cut(s)	198, 222, 272, 699
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	5 cut(s)	139, 226, 253, 636, 655
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	3 cut(s)	376, 479, 564
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	3 cut(s)	407, 583, 718
SsiI	CCGC	2 cut(s)	195, 198
SspMI	CTAG	3 cut(s)	147, 210, 551
SstI	GAGCTC	1 cut(s)	146
StyD4I	CCNGG	5 cut(s)	137, 224, 251, 634, 653
TaaI	ACNGT	4 cut(s)	259, 299, 424, 562
TaiI	ACGT	1 cut(s)	674
TaqI	TCGA	2 cut(s)	104, 352
TasI	AATT	3 cut(s)	407, 583, 718
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	6 cut(s)	62, 156, 506, 547, 663, 742
Tru1I	TTAA	2 cut(s)	447, 714
Tru9I	TTAA	2 cut(s)	447, 714
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	3 cut(s)	221, 271, 698
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	148, 386
TspGWI	ACGGA	2 cut(s)	191, 197
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	583
XbaI	TCTAGA	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	3 cut(s)	147, 210, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.