Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011036

Physical Location & Seq

Genomic Coordinates Reverse (-)

542261 .. 544540

Gene Structure 2280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1005200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTACAATCTCATCCATATTCTCACCACCCAATCTCCTTCACCAATCCACAAAACCCATCAAAACCTCACCAAAACTGCCCCTCCAAATCCTCAAACCGACCCAATTTCAGGGCTATCACAAACTCACTTCCTCCTATCTGACGCTGACCCCCAGACACTCACAGAGGCTCTTCGCTGTCGCCGAGGAAGTCGCAGCAGACCCAGCTTCGAAGGCGGCCAGGAGAGTCTACATTGGTAACATTCCCAGGACTGTGGATAATGCTGAGCTTACCAAAATTGTTGAGGAACATGGAGCTGTCGAGAAGGCTGAGGTGATGTATGATAAGTACTCTGGAAGAAGTCGCCGGTTTGCATTTGCTACAATGACGACCGTTGAAGATGCAAATGCTGTGGTTGAGAAACTGAATGGAACTGAGATTGGAGGACGTGAAGTCAAAGTAAACATAACTGAAAAACCCCTGCTACAAGCGGACTCATCACTAGTTCAGGCAGAAGAGTCTCAATTCATTGACAGCCCCCACAAAGTTTATGTTGGAAATCTTGCAAAGGAAGTAACTACGGATACACTCAAAACCCTTTTCTCTGACAAGGGAAAAGTTCTTAGTGCAAAGGTTTCCCGGGTTCCAGGGACCTCAAAATCTAGTGGATTTGGGTTTGTTTCTTTCTCCTCGGAGGAGGATGTAGAAGCTGCAATCTCATCTTTCAACAATACTGTAAGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0010029 GO:0010035 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047484 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055035 GO:0065007 GO:0080134 GO:0080148 GO:0097159 GO:1900140 GO:1901000 GO:1901001 GO:1901363 GO:1901700 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

243

Amino Acids

26.43

Weight (kDa)

8.63

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	77 - 147	6.9e-17	RNA recognition motif
RRM_1	PF00076	177 - 239	5.8e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52150 AT3G52150
fragaria_vesca	FvH4_7g00530 FvH4_7g00530
malus_domestica	MD02G1316800.v1.1 MD07G1005200.v1.1
prunus_persica	Prupe.2G007400_v2.0.a1
pyrus_communis	pycom02g26550 pycom07g00420
rosa_chinensis	RchiOBHm_Chr1g0314321
rosa_laevigata	RLG00000030766
rosa_multiflora	Rmu_sc0000343.1_g000012 Rmu_sc0002833.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331960
rosa_rugosa	Rorug01G0001000
rosa_samantha	Rh1AG010100 Rh1BG003000 Rh1CG010400 Rh1DG005500
rosa_wichuraiana	Rw1G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	2 cut(s)	218, 473
AcoI	YGGCCR	1 cut(s)	219
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	380, 709
AhdI	GACNNNNNGTC	1 cut(s)	434
AhlI	ACTAGT	1 cut(s)	484
AjiI	CACGTC	1 cut(s)	431
AjnI	CCWGG	3 cut(s)	221, 248, 628
AluBI	AGCT	4 cut(s)	209, 271, 299, 692
AluI	AGCT	4 cut(s)	209, 271, 299, 692
Alw26I	GTCTC	1 cut(s)	507
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	197, 692
AspS9I	GGNCC	1 cut(s)	633
AsuC2I	CCSGG	2 cut(s)	622, 623
AsuHPI	GGTGA	4 cut(s)	18, 35, 63, 328
AsuII	TTCGAA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	621
AvaII	GGWCC	1 cut(s)	633
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	209, 679
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	3 cut(s)	223, 250, 630
BciVI	GTATCC	1 cut(s)	559
BcnI	CCSGG	2 cut(s)	622, 623
BcoDI	GTCTC	1 cut(s)	507
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	3 cut(s)	485, 645, 727
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	3 cut(s)	198, 219, 693
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	3 cut(s)	199, 220, 694
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	5 cut(s)	223, 250, 622, 623, 630
Bme18I	GGWCC	1 cut(s)	633
BmeRI	GACNNNNNGTC	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	621
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	633
BmiI	GGNNCC	2 cut(s)	627, 634
BmrFI	CCNGG	5 cut(s)	223, 250, 622, 623, 630
BmsI	GCATC	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	212
BpuMI	CCSGG	2 cut(s)	622, 623
BsaJI	CCNNGG	5 cut(s)	186, 248, 621, 629, 672
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	348
BseBI	CCWGG	3 cut(s)	223, 250, 630
BseDI	CCNNGG	5 cut(s)	186, 248, 621, 629, 672
BseGI	GGATG	2 cut(s)	14, 688
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	3 cut(s)	258, 303, 408
BseRI	GAGGAG	2 cut(s)	661, 692
BseXI	GCAGC	2 cut(s)	209, 679
BseYI	CCCAGC	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	2 cut(s)	349, 622
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	621
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	218, 473
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	3 cut(s)	259, 304, 409
BspLI	GGNNCC	2 cut(s)	627, 634
BspQI	GCTCTTC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	5 cut(s)	186, 248, 621, 629, 672
Bst2UI	CCWGG	3 cut(s)	223, 250, 630
Bst4CI	ACNGT	3 cut(s)	256, 376, 718
Bst6I	CTCTTC	2 cut(s)	179, 492
BstBI	TTCGAA	1 cut(s)	212
BstDEI	CTNAG	4 cut(s)	267, 312, 417, 605
BstF5I	GGATG	2 cut(s)	14, 688
BstMAI	GTCTC	1 cut(s)	507
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 215
BstNI	CCWGG	3 cut(s)	223, 250, 630
BstSCI	CCNGG	5 cut(s)	221, 248, 620, 621, 628
BstV1I	GCAGC	2 cut(s)	209, 679
BstXI	CCANNNNNNTGG	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	14, 688
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	633
Cfr9I	CCCGGG	1 cut(s)	621
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	331
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CviAII	CATG	1 cut(s)	293
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	4 cut(s)	267, 312, 417, 605
DriI	GACNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	179, 492
Eam1105I	GACNNNNNGTC	1 cut(s)	434
EarI	CTCTTC	2 cut(s)	179, 492
Eco47I	GGWCC	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	633
EcoRII	CCWGG	3 cut(s)	221, 248, 628
FaeI	CATG	1 cut(s)	296
FaiI	YATR	5 cut(s)	20, 294, 324, 449, 534
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	198, 219, 693
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	3 cut(s)	198, 219, 693
FspBI	CTAG	3 cut(s)	485, 645, 727
GluI	GCNGC	3 cut(s)	198, 219, 693
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	2 cut(s)	349, 622
HgaI	GACGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	296
HinfI	GANTC	3 cut(s)	228, 476, 500
HpaII	CCGG	2 cut(s)	349, 622
HphI	GGTGA	4 cut(s)	18, 35, 63, 328
Hpy166II	GTNNAC	2 cut(s)	232, 445
Hpy188I	TCNGA	3 cut(s)	144, 589, 676
Hpy188III	TCNNGA	2 cut(s)	304, 336
Hpy8I	GTNNAC	2 cut(s)	232, 445
HpyAV	CCTTC	3 cut(s)	50, 208, 301
HpyCH4III	ACNGT	3 cut(s)	256, 376, 718
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	5 cut(s)	356, 386, 548, 611, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 215
HpyF3I	CTNAG	4 cut(s)	267, 312, 417, 605
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	1 cut(s)	296
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	2 cut(s)	209, 679
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	3 cut(s)	485, 645, 727
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	2 cut(s)	239, 556
MboII	GAAGA	4 cut(s)	166, 351, 392, 509
MluCI	AATT	3 cut(s)	107, 279, 506
MlyI	GAGTC	3 cut(s)	237, 470, 509
MmeI	TCCRAC	1 cut(s)	517
MspI	CCGG	2 cut(s)	349, 622
MspR9I	CCNGG	5 cut(s)	223, 250, 622, 623, 630
MvaI	CCWGG	3 cut(s)	223, 250, 630
MwoI	GCNNNNNNNGC	2 cut(s)	206, 215
NciI	CCSGG	2 cut(s)	622, 623
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	2 cut(s)	627, 634
NmeAIII	GCCGAG	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	212
PciSI	GCTCTTC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	199, 220, 694
PleI	GAGTC	3 cut(s)	236, 470, 508
PpsI	GAGTC	3 cut(s)	236, 470, 508
PpuMI	RGGWCCY	1 cut(s)	633
Psp5II	RGGWCCY	1 cut(s)	633
Psp6I	CCWGG	3 cut(s)	221, 248, 628
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	3 cut(s)	221, 248, 628
PspN4I	GGNNCC	2 cut(s)	627, 634
PspPI	GGNCC	1 cut(s)	633
PspPPI	RGGWCCY	1 cut(s)	633
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	179
SatI	GCNGC	3 cut(s)	198, 219, 693
Sau96I	GGNCC	1 cut(s)	633
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	3 cut(s)	237, 470, 509
ScrFI	CCNGG	5 cut(s)	223, 250, 622, 623, 630
SetI	ASST	9 cut(s)	71, 211, 273, 301, 318, 433, 618, 638, 694
SfaNI	GCATC	1 cut(s)	373
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	1 cut(s)	633
SmaI	CCCGGG	1 cut(s)	623
SpeI	ACTAGT	1 cut(s)	484
Sse9I	AATT	3 cut(s)	107, 279, 506
SsiI	CCGC	2 cut(s)	218, 473
SspMI	CTAG	3 cut(s)	485, 645, 727
StyD4I	CCNGG	5 cut(s)	221, 248, 620, 621, 628
TaaI	ACNGT	3 cut(s)	256, 376, 718
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	212, 303
TasI	AATT	3 cut(s)	107, 279, 506
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	197, 692
TspDTI	ATGAA	1 cut(s)	499
TspGWI	ACGGA	1 cut(s)	578
TspMI	CCCGGG	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	633
XmaI	CCCGGG	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	3 cut(s)	485, 645, 727
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.