Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011036

Physical Location & Seq

Genomic Coordinates Reverse (-)

414382 .. 415717

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTATGATAAGTACTCTGGAAGAAGTCGCCGGTTTGCATTTGCTACGATGAAGACTGTTGAAGATGCAAATGCTGTGGTTGAGAAACTGAATGGAACTGAGATTGGAGGACGTGAAGTCAAAGTAAACATAACTGAAAAACCCCTGCTACAAGCGGACTCATCACTTGTTCAGGCAGAAGAGTCTCAATTCATTGACAGCCCCCACAAAGTTTATGTTGGAAATCTTGCAAAGGAAGTAACTACGGATACACTCAAAACCCTTTTCTCTGACAAGGGAAAAGTTCTTAGTGCAAAGGTTTCCCGGGTTCCAGGGACCTCAAAATCTAGTGGATTTGGGTTTGTTTCTTTCTCCTCGGAGGAGGATGTAGAAGCTGCAATCTCATCTTTCAACAATACTTTGTTCGAAGGGCAAAGAATTCGTGTAAACAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0010029 GO:0010035 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047484 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055035 GO:0065007 GO:0080134 GO:0080148 GO:0097159 GO:1900140 GO:1901000 GO:1901001 GO:1901363 GO:1901700 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

146

Amino Acids

15.86

Weight (kDa)

7.9

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52150 AT3G52150
fragaria_vesca	FvH4_7g00530 FvH4_7g00530
malus_domestica	MD02G1316800.v1.1 MD07G1005200.v1.1
prunus_persica	Prupe.2G007400_v2.0.a1
pyrus_communis	pycom02g26550 pycom07g00420
rosa_chinensis	RchiOBHm_Chr1g0314321
rosa_laevigata	RLG00000030766
rosa_multiflora	Rmu_sc0000343.1_g000012 Rmu_sc0002833.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331960
rosa_rugosa	Rorug01G0001000
rosa_samantha	Rh1AG010100 Rh1BG003000 Rh1CG010400 Rh1DG005500
rosa_wichuraiana	Rw1G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	417
AfaI	GTAC	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	62, 391
AhdI	GACNNNNNGTC	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	417
AspS9I	GGNCC	1 cut(s)	315
AsuC2I	CCSGG	2 cut(s)	304, 305
AsuII	TTCGAA	1 cut(s)	405
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	361
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	304, 305
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	3 cut(s)	304, 305, 312
Bme18I	GGWCC	1 cut(s)	315
BmeRI	GACNNNNNGTC	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	303
BmgBI	CACGTC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	2 cut(s)	309, 316
BmrFI	CCNGG	3 cut(s)	304, 305, 312
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	59
Bpu14I	TTCGAA	1 cut(s)	405
BpuMI	CCSGG	2 cut(s)	304, 305
BsaJI	CCNNGG	3 cut(s)	303, 311, 354
Bse118I	RCCGGY	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	303, 311, 354
BseGI	GGATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	2 cut(s)	343, 374
BseXI	GCAGC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	31, 304
BslFI	GGGAC	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	405
BspACI	CCGC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	309, 316
BspT104I	TTCGAA	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	3 cut(s)	303, 311, 354
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	174
BstBI	TTCGAA	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	99, 287
BstF5I	GGATG	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	3 cut(s)	302, 303, 310
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	315
Cfr9I	CCCGGG	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	13
CspCI	CAANNNNNGTGG	2 cut(s)	57, 92
CviJI	RGCY	2 cut(s)	201, 374
CviKI_1	RGCY	2 cut(s)	201, 374
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	2 cut(s)	99, 287
DriI	GACNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	174
Eam1105I	GACNNNNNGTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	310
FaiI	YATR	4 cut(s)	6, 131, 216, 436
FaqI	GGGAC	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	1 cut(s)	375
HapII	CCGG	2 cut(s)	31, 304
HinfI	GANTC	2 cut(s)	158, 182
HpaII	CCGG	2 cut(s)	31, 304
Hpy166II	GTNNAC	2 cut(s)	127, 427
Hpy188I	TCNGA	2 cut(s)	271, 358
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	2 cut(s)	127, 427
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	5 cut(s)	38, 68, 230, 293, 377
HpyF3I	CTNAG	2 cut(s)	99, 287
HpySE526I	ACGT	1 cut(s)	112
LpnPI	CCDG	7 cut(s)	3, 44, 158, 158, 297, 317, 324
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	238
MboII	GAAGA	4 cut(s)	33, 64, 74, 191
MluCI	AATT	2 cut(s)	188, 417
MlyI	GAGTC	2 cut(s)	152, 191
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	101, 328, 352, 355, 364
MspI	CCGG	2 cut(s)	31, 304
MspR9I	CCNGG	3 cut(s)	304, 305, 312
MvaI	CCWGG	1 cut(s)	312
NciI	CCSGG	2 cut(s)	304, 305
NlaIV	GGNNCC	2 cut(s)	309, 316
NspV	TTCGAA	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	2 cut(s)	152, 190
PpsI	GAGTC	2 cut(s)	152, 190
PpuMI	RGGWCCY	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	309, 316
PspPI	GGNCC	1 cut(s)	315
PspPPI	RGGWCCY	1 cut(s)	315
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SatI	GCNGC	1 cut(s)	375
Sau96I	GGNCC	1 cut(s)	315
ScaI	AGTACT	1 cut(s)	14
SchI	GAGTC	2 cut(s)	152, 191
ScrFI	CCNGG	3 cut(s)	304, 305, 312
SetI	ASST	4 cut(s)	115, 300, 320, 376
SfaNI	GCATC	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	405
SinI	GGWCC	1 cut(s)	315
SmaI	CCCGGG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	188, 417
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	302, 303, 310
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	405
TasI	AATT	2 cut(s)	188, 417
TatI	WGTACW	1 cut(s)	12
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	65, 181
TspGWI	ACGGA	1 cut(s)	260
TspMI	CCCGGG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	1 cut(s)	417
XmaI	CCCGGG	1 cut(s)	303
XspI	CTAG	1 cut(s)	327
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.