Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011036

Physical Location & Seq

Genomic Coordinates Reverse (-)

897935 .. 899829

Gene Structure 1895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG005500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCGACAATCTCATCACTTTTCTCATCACCCAATCTCCTTCACCACCCCACAAAACCCATCAAAGCCTCACCGAAGCTGACCCTCCAAATCCTGAAAGCGACACCGTTTCAGGGCTCTTATCTGAAGCTGACCTCCAGAAACTCGCAGAGGCTGTATGCTGTTGCCGAAGAAGTCGCCGCCGACCCGTCTTCCAAGGCCGCCAGGAGAGTCTACATCGGCAACATTCCCAGGACTGTGGATAATGCCGAGCTTGCTAAAATTGTTGAAGAACATGGTGCTGTTGAGAAGGCTGAGGAGGTTGGAGGACGCGAGATCAAGGTAAACATAACCGAGAAACCCCTTCTACAACCAGATTTATCACTTGTCCAGGCAGAAGAGTCCCAATTTGTCGACAGCCCCCACAAAGTTTATGTTGGAAATCTTGGAAAGGGAGTAACTACAGATACACTCCAAAAGCTTTTCGCTGAAAAAGCAAAAGTTCTTAGTGCAAAGGTCTCCCGGGTTCCAGGAACCTCAAAATCTAGTGGATTTGGGTTTGTCTCTTTCTCATCAGAGGAGGATGTAGAAGCTGCCATCTCATCTTTCAACAACACTTTTTTTGAAGGCCAAAGAATTCGCGTCAACAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0010029 GO:0010035 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047484 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055035 GO:0065007 GO:0080134 GO:0080148 GO:0097159 GO:1900140 GO:1901000 GO:1901001 GO:1901363 GO:1901700 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

211

Amino Acids

22.91

Weight (kDa)

9.2

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	137 - 207	6.7e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52150 AT3G52150
fragaria_vesca	FvH4_7g00530 FvH4_7g00530
malus_domestica	MD02G1316800.v1.1 MD07G1005200.v1.1
prunus_persica	Prupe.2G007400_v2.0.a1
pyrus_communis	pycom02g26550 pycom07g00420
rosa_chinensis	RchiOBHm_Chr1g0314321
rosa_laevigata	RLG00000030766
rosa_multiflora	Rmu_sc0000343.1_g000012 Rmu_sc0002833.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331960
rosa_rugosa	Rorug01G0001000
rosa_samantha	Rh1AG010100 Rh1BG003000 Rh1CG010400 Rh1DG005500
rosa_wichuraiana	Rw1G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	213, 393
AccII	CGCG	2 cut(s)	312, 621
AciI	CCGC	2 cut(s)	180, 201
AcsI	RAATTY	1 cut(s)	615
AcuI	CTGAAG	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	269, 589, 605
AjnI	CCWGG	4 cut(s)	203, 230, 369, 508
AluBI	AGCT	5 cut(s)	79, 130, 253, 460, 572
AluI	AGCT	5 cut(s)	79, 130, 253, 460, 572
Alw26I	GTCTC	2 cut(s)	502, 547
AlwNI	CAGNNNCTG	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	2 cut(s)	198, 607
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	1 cut(s)	615
AsuC2I	CCSGG	2 cut(s)	502, 503
AsuHPI	GGTGA	3 cut(s)	21, 35, 63
AvaI	CYCGRG	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	2 cut(s)	68, 584
BciT130I	CCWGG	4 cut(s)	205, 232, 371, 510
BcnI	CCSGG	2 cut(s)	502, 503
BcoDI	GTCTC	2 cut(s)	502, 547
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	441
BisI	GCNGC	3 cut(s)	180, 201, 573
BlsI	GCNGC	3 cut(s)	181, 202, 574
Bme1390I	CCNGG	6 cut(s)	205, 232, 371, 502, 503, 510
BmeT110I	CYCGRG	1 cut(s)	501
BmiI	GGNNCC	2 cut(s)	507, 514
BmrFI	CCNGG	6 cut(s)	205, 232, 371, 502, 503, 510
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	502, 503
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	3 cut(s)	195, 230, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
BseBI	CCWGG	4 cut(s)	205, 232, 371, 510
BseDI	CCNNGG	3 cut(s)	195, 230, 501
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	285
BseRI	GAGGAG	2 cut(s)	311, 572
BseXI	GCAGC	1 cut(s)	559
Bsh1236I	CGCG	2 cut(s)	312, 621
BshFI	GGCC	2 cut(s)	200, 609
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	502, 547
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	200, 609
Bso31I	GGTCTC	1 cut(s)	502
BsoBI	CYCGRG	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	2 cut(s)	180, 201
BspANI	GGCC	2 cut(s)	200, 609
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	2 cut(s)	312, 621
BspLI	GGNNCC	2 cut(s)	507, 514
BspTNI	GGTCTC	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	195, 230, 501
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	4 cut(s)	205, 232, 371, 510
Bst4CI	ACNGT	2 cut(s)	108, 238
Bst6I	CTCTTC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	294, 485
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	2 cut(s)	312, 621
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	2 cut(s)	502, 547
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 473
BstNI	CCWGG	4 cut(s)	205, 232, 371, 510
BstSCI	CCNGG	6 cut(s)	203, 230, 369, 500, 501, 508
BstSFI	CTRYAG	1 cut(s)	441
BstUI	CGCG	2 cut(s)	312, 621
BstV1I	GCAGC	1 cut(s)	559
BstV2I	GAAGAC	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	200, 609
BtsCI	GGATG	1 cut(s)	568
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	154
Cfr9I	CCCGGG	1 cut(s)	501
CseI	GACGC	2 cut(s)	318, 610
CviAII	CATG	1 cut(s)	275
DdeI	CTNAG	2 cut(s)	294, 485
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	501
EcoRI	GAATTC	1 cut(s)	615
EcoRII	CCWGG	4 cut(s)	203, 230, 369, 508
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	278
FaiI	YATR	5 cut(s)	159, 276, 329, 414, 634
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	1 cut(s)	274
FblI	GTMKAC	2 cut(s)	213, 393
Fnu4HI	GCNGC	3 cut(s)	180, 201, 573
FokI	GGATG	1 cut(s)	575
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	180, 201, 573
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	3 cut(s)	180, 201, 573
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	200, 609
HapII	CCGG	1 cut(s)	502
HgaI	GACGC	2 cut(s)	318, 610
Hin1II	CATG	1 cut(s)	278
HincII	GTYRAC	2 cut(s)	394, 625
HindII	GTYRAC	2 cut(s)	394, 625
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	210, 380
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	3 cut(s)	21, 35, 63
Hpy166II	GTNNAC	4 cut(s)	214, 325, 394, 625
Hpy188I	TCNGA	2 cut(s)	126, 556
Hpy188III	TCNNGA	2 cut(s)	94, 138
Hpy8I	GTNNAC	4 cut(s)	214, 325, 394, 625
HpyAV	CCTTC	4 cut(s)	50, 283, 353, 599
HpyCH4III	ACNGT	2 cut(s)	108, 238
HpyCH4V	TGCA	1 cut(s)	491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 473
HpyF3I	CTNAG	2 cut(s)	294, 485
Hsp92II	CATG	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	315
Lsp1109I	GCAGC	1 cut(s)	559
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	4 cut(s)	182, 183, 281, 389
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	3 cut(s)	261, 386, 615
MlyI	GAGTC	2 cut(s)	219, 389
MmeI	TCCRAC	2 cut(s)	283, 397
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	6 cut(s)	205, 232, 371, 502, 503, 510
MvaI	CCWGG	4 cut(s)	205, 232, 371, 510
MvnI	CGCG	2 cut(s)	312, 621
MwoI	GCNNNNNNNGC	2 cut(s)	254, 473
NciI	CCSGG	2 cut(s)	502, 503
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	507, 514
NmeAIII	GCCGAG	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	3 cut(s)	181, 202, 574
PleI	GAGTC	2 cut(s)	218, 388
PpsI	GAGTC	2 cut(s)	218, 388
Psp6I	CCWGG	4 cut(s)	203, 230, 369, 508
PspGI	CCWGG	4 cut(s)	203, 230, 369, 508
PspN4I	GGNNCC	2 cut(s)	507, 514
PstNI	CAGNNNCTG	1 cut(s)	154
SalI	GTCGAC	1 cut(s)	392
SatI	GCNGC	3 cut(s)	180, 201, 573
Sau3AI	GATC	1 cut(s)	315
SchI	GAGTC	2 cut(s)	219, 389
ScrFI	CCNGG	6 cut(s)	205, 232, 371, 502, 503, 510
SduI	GDGCHC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	441
SmaI	CCCGGG	1 cut(s)	503
Sse9I	AATT	3 cut(s)	261, 386, 615
SsiI	CCGC	2 cut(s)	180, 201
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	6 cut(s)	203, 230, 369, 500, 501, 508
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	108, 238
TaqI	TCGA	1 cut(s)	393
TasI	AATT	3 cut(s)	261, 386, 615
TauI	GCSGC	2 cut(s)	182, 203
TseI	GCWGC	1 cut(s)	572
TspMI	CCCGGG	1 cut(s)	501
XapI	RAATTY	1 cut(s)	615
XmaI	CCCGGG	1 cut(s)	501
XmiI	GTMKAC	2 cut(s)	213, 393
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.