Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011036

Physical Location & Seq

Genomic Coordinates Reverse (-)

692698 .. 696199

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G007400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTACAATCTCATCCCTACTGTCACCACCCAATCTCCTTCACCATCACACAAAACCCATCAAAGCCGCACCAAAACTGTCTCTCCAAATCCTCAAACCGACCCAATTTCAGGGCTTTCAGAAACTCACTTCCTCTTATATGATTCTGACCCCCAGACATTCACAAAGAGTCTCTGCTGTTGCCGAAGAAGTCGCAGCCGACCCGTCTTCTAAAGCGGCCAGGAGAGTTTACATTGGCAACATTCCCAGGACTGTGGATAATGCTGAGCTTACCAAAATTGTTGAAGAACACGGAGCTGTAGAGAAGGCTGAGGTGATGTTTGATAAGTACTCTGGAAGAAGTCGCCGATTTGCATTTGTTACAGCAAAGACTGTTGAAGATGCGAATTCCATTGTTGAAAAACTGAATGGAACTGAGATTGGAGGACGTGAAATCAAAGTAAACATAACCGAGAAACCCCTGCTACAAGCGGACGTATCACTTCTTCAGGCAGAAGAGTCCCAATTCATTGATAGCCCCCATAAAGTGTATGTTGGAAATCTTGGAAAGGAAGTAACTACGGATACACTCAAAACCCTCTTCTCTGAGAAGGGAAAAGTTCTTAGCGCAAAGGTTTCCCGGGTTCCAGGGACTTCAAAATCTAGTGGTTTTGGGTTTGTTTCTTTCTCCTCGGAGGAGGATGTAGAAGCTGCCATCTCTTCTTTCAACAATACTTTGTTTGAAGGGCAACGAATTCGTGTAAACAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0010029 GO:0010035 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047484 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055035 GO:0065007 GO:0080134 GO:0080148 GO:0097159 GO:1900140 GO:1901000 GO:1901001 GO:1901363 GO:1901700 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

252

Amino Acids

27.47

Weight (kDa)

9.28

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52150 AT3G52150
fragaria_vesca	FvH4_7g00530 FvH4_7g00530
malus_domestica	MD02G1316800.v1.1 MD07G1005200.v1.1
prunus_persica	Prupe.2G007400_v2.0.a1
pyrus_communis	pycom02g26550 pycom07g00420
rosa_chinensis	RchiOBHm_Chr1g0314321
rosa_laevigata	RLG00000030766
rosa_multiflora	Rmu_sc0000343.1_g000012 Rmu_sc0002833.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331960
rosa_rugosa	Rorug01G0001000
rosa_samantha	Rh1AG010100 Rh1BG003000 Rh1CG010400 Rh1DG005500
rosa_wichuraiana	Rw1G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	69, 218, 473
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	388, 735
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	6 cut(s)	287, 380, 401, 639, 709, 725
AjiI	CACGTC	1 cut(s)	431
AjnI	CCWGG	3 cut(s)	221, 248, 628
AluBI	AGCT	3 cut(s)	271, 299, 692
AluI	AGCT	3 cut(s)	271, 299, 692
Alw26I	GTCTC	2 cut(s)	87, 178
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	197, 692
ApoI	RAATTY	2 cut(s)	388, 735
AspLEI	GCGC	1 cut(s)	611
AsuC2I	CCSGG	2 cut(s)	622, 623
AsuHPI	GGTGA	3 cut(s)	18, 35, 328
AvaI	CYCGRG	1 cut(s)	621
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
BbsI	GAAGAC	1 cut(s)	201
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	209, 679
BccI	CCATC	3 cut(s)	54, 68, 704
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciT130I	CCWGG	3 cut(s)	223, 250, 630
BciVI	GTATCC	1 cut(s)	559
BcnI	CCSGG	2 cut(s)	622, 623
BcoDI	GTCTC	2 cut(s)	87, 178
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	4 cut(s)	69, 198, 219, 693
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	4 cut(s)	70, 199, 220, 694
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	5 cut(s)	223, 250, 622, 623, 630
BmeT110I	CYCGRG	1 cut(s)	621
BmgBI	CACGTC	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	5 cut(s)	223, 250, 622, 623, 630
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	622, 623
BsaJI	CCNNGG	4 cut(s)	248, 621, 629, 672
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
BseBI	CCWGG	3 cut(s)	223, 250, 630
BseDI	CCNNGG	4 cut(s)	248, 621, 629, 672
BseGI	GGATG	2 cut(s)	14, 688
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	4 cut(s)	258, 303, 408, 579
BseRI	GAGGAG	2 cut(s)	661, 692
BseXI	GCAGC	2 cut(s)	209, 679
BshFI	GGCC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	622
BslFI	GGGAC	2 cut(s)	487, 646
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	87, 178
BsmFI	GGGAC	2 cut(s)	487, 646
BsnI	GGCC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	621
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	3 cut(s)	69, 218, 473
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	4 cut(s)	259, 304, 409, 580
BspLI	GGNNCC	1 cut(s)	627
BssECI	CCNNGG	4 cut(s)	248, 621, 629, 672
Bst2UI	CCWGG	3 cut(s)	223, 250, 630
Bst4CI	ACNGT	4 cut(s)	24, 81, 256, 376
Bst6I	CTCTTC	3 cut(s)	492, 587, 706
BstDEI	CTNAG	5 cut(s)	267, 312, 417, 588, 605
BstF5I	GGATG	2 cut(s)	14, 688
BstHHI	GCGC	1 cut(s)	611
BstMAI	GTCTC	2 cut(s)	87, 178
BstNI	CCWGG	3 cut(s)	223, 250, 630
BstSCI	CCNGG	5 cut(s)	221, 248, 620, 621, 628
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	209, 679
BstV2I	GAAGAC	1 cut(s)	201
BstXI	CCANNNNNNTGG	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	14, 688
CfoI	GCGC	1 cut(s)	611
Cfr9I	CCCGGG	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	331
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	5 cut(s)	267, 312, 417, 588, 605
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	3 cut(s)	492, 587, 706
EarI	CTCTTC	3 cut(s)	492, 587, 706
Eco57I	CTGAAG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	621
EcoRI	GAATTC	2 cut(s)	388, 735
EcoRII	CCWGG	3 cut(s)	221, 248, 628
FaiI	YATR	6 cut(s)	141, 143, 449, 525, 534, 754
FaqI	GGGAC	2 cut(s)	487, 646
Fnu4HI	GCNGC	4 cut(s)	69, 198, 219, 693
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	4 cut(s)	69, 198, 219, 693
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	4 cut(s)	69, 198, 219, 693
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	622
HhaI	GCGC	1 cut(s)	611
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HinfI	GANTC	3 cut(s)	145, 171, 500
HpaII	CCGG	1 cut(s)	622
HphI	GGTGA	3 cut(s)	18, 35, 328
Hpy166II	GTNNAC	3 cut(s)	232, 445, 745
Hpy188I	TCNGA	4 cut(s)	123, 150, 589, 676
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	3 cut(s)	232, 445, 745
HpyAV	CCTTC	4 cut(s)	50, 301, 586, 719
HpyCH4III	ACNGT	4 cut(s)	24, 81, 256, 376
HpyCH4IV	ACGT	2 cut(s)	430, 477
HpyCH4V	TGCA	1 cut(s)	356
HpyF3I	CTNAG	5 cut(s)	267, 312, 417, 588, 605
HpySE526I	ACGT	2 cut(s)	430, 477
HspAI	GCGC	1 cut(s)	609
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	2 cut(s)	209, 679
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	2 cut(s)	430, 477
MaeIII	GTNAC	3 cut(s)	24, 361, 556
MboII	GAAGA	9 cut(s)	200, 201, 299, 351, 392, 479, 509, 574, 693
MluCI	AATT	5 cut(s)	107, 279, 388, 506, 735
MlyI	GAGTC	2 cut(s)	180, 509
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	8 cut(s)	104, 145, 307, 419, 590, 670, 673, 682
MspI	CCGG	1 cut(s)	622
MspR9I	CCNGG	5 cut(s)	223, 250, 622, 623, 630
MvaI	CCWGG	3 cut(s)	223, 250, 630
NciI	CCSGG	2 cut(s)	622, 623
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	70, 199, 220, 694
PleI	GAGTC	2 cut(s)	179, 508
PpsI	GAGTC	2 cut(s)	179, 508
Psp6I	CCWGG	3 cut(s)	221, 248, 628
PspGI	CCWGG	3 cut(s)	221, 248, 628
PspN4I	GGNNCC	1 cut(s)	627
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SatI	GCNGC	4 cut(s)	69, 198, 219, 693
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	2 cut(s)	180, 509
ScrFI	CCNGG	5 cut(s)	223, 250, 622, 623, 630
SetI	ASST	7 cut(s)	273, 301, 318, 433, 480, 618, 694
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	300
SmaI	CCCGGG	1 cut(s)	623
Sse9I	AATT	5 cut(s)	107, 279, 388, 506, 735
SsiI	CCGC	3 cut(s)	69, 218, 473
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	5 cut(s)	221, 248, 620, 621, 628
TaaI	ACNGT	4 cut(s)	24, 81, 256, 376
TaiI	ACGT	2 cut(s)	433, 480
TasI	AATT	5 cut(s)	107, 279, 388, 506, 735
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	2 cut(s)	71, 221
TfiI	GAWTC	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	2 cut(s)	197, 692
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	499
TspGWI	ACGGA	2 cut(s)	309, 578
TspMI	CCCGGG	1 cut(s)	621
XapI	RAATTY	2 cut(s)	388, 735
XmaI	CCCGGG	1 cut(s)	621
XspI	CTAG	1 cut(s)	645
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.