Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011036

Physical Location & Seq

Genomic Coordinates Reverse (-)

1127887 .. 1130192

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGACGACAATCTCATCTTTGTTCTCGTCACCCAATCTCCTTCACCACCCATCAAAACCCGTCACAGGGCTGACCCTGAAAGCGACGCCGTTTCAGGGCTCTTATCTGAGGCTGGCCTCCAGAGGAGGGTTGCAGAGGCTGTACGCTGTTGCCGAAGAAGTCGCCGCCGCAGACCCGTCTTCCAAGGCCGCCCGGAGAGTCTACATCGGCAACATTCCCAGGACTGTGGATAATGCCGAGCTCACCAAAATCGTGGAAGAACATGGCGCTGTTGAGAAGGCTGAGGTGATGTATGATAAGTACTCTGGAAGAAGTCGGCGGTTCGCATTTGTTACAACAAGGACTGTTGAAGATGCAAATGCCATAGTTGAGAAGCTGAATGGAACTGAGATTGGAGGGCGTGAGATAAAGGTGAACATAACCGAGAAGCCCCTCATACAACCAGATTTGTCACTTGTCCAGGCAGAAGAGTCGCAATTTGTTGACAGCCACCACAAAGTTTATGTTGGAAATCTTGCAAAGGGTGTTACGACAGAAACACTCCAGAAGCTTTTCTCTGAAAAGGCAAAGGTACTTAGTGCAAAGGTCTCCCGGGTTCCTGGAACCTCAAAATCTAGTGGATTTGGGTTCGTGTCTTTCTCATCAGAGGAGGATGTAGAAGCTGCCATCTCATCTTTCAACAACACTTTGTTTGAAGGCCAAAAAATTCGCGTCAACAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0010029 GO:0010035 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047484 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055035 GO:0065007 GO:0080134 GO:0080148 GO:0097159 GO:1900140 GO:1901000 GO:1901001 GO:1901363 GO:1901700 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

243

Amino Acids

26.32

Weight (kDa)

9.15

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	68 - 138	4.1e-17	RNA recognition motif
RRM_1	PF00076	168 - 238	1.9e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52150 AT3G52150
fragaria_vesca	FvH4_7g00530 FvH4_7g00530
malus_domestica	MD02G1316800.v1.1 MD07G1005200.v1.1
prunus_persica	Prupe.2G007400_v2.0.a1
pyrus_communis	pycom02g26550 pycom07g00420
rosa_chinensis	RchiOBHm_Chr1g0314321
rosa_laevigata	RLG00000030766
rosa_multiflora	Rmu_sc0000343.1_g000012 Rmu_sc0002833.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331960
rosa_rugosa	Rorug01G0001000
rosa_samantha	Rh1AG010100 Rh1BG003000 Rh1CG010400 Rh1DG005500
rosa_wichuraiana	Rw1G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	714
AciI	CCGC	4 cut(s)	168, 171, 192, 322
AcsI	RAATTY	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	3 cut(s)	146, 305, 576
AfiI	CCNNNNNNNGG	4 cut(s)	68, 69, 98, 129
AgsI	TTSAA	3 cut(s)	353, 682, 698
AjnI	CCWGG	3 cut(s)	221, 462, 601
AluBI	AGCT	4 cut(s)	244, 379, 553, 665
AluI	AGCT	4 cut(s)	244, 379, 553, 665
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	595
AlwNI	CAGNNNCTG	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	594
AoxI	GGCC	3 cut(s)	117, 189, 700
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	1 cut(s)	708
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	272
AsuC2I	CCSGG	3 cut(s)	196, 595, 596
AsuHPI	GGTGA	5 cut(s)	24, 38, 238, 301, 427
AvaI	CYCGRG	1 cut(s)	594
BanII	GRGCYC	2 cut(s)	104, 246
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	2 cut(s)	61, 677
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	456, 490
BciT130I	CCWGG	3 cut(s)	223, 464, 603
BcnI	CCSGG	3 cut(s)	196, 595, 596
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	4 cut(s)	168, 171, 192, 666
BlsI	GCNGC	4 cut(s)	169, 172, 193, 667
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	6 cut(s)	196, 223, 464, 595, 596, 603
BmeT110I	CYCGRG	1 cut(s)	594
BmiI	GGNNCC	2 cut(s)	600, 607
BmrFI	CCNGG	6 cut(s)	196, 223, 464, 595, 596, 603
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	2 cut(s)	106, 530
Bpu10I	CCTNAGC	1 cut(s)	285
BpuMI	CCSGG	3 cut(s)	196, 595, 596
BsaHI	GRCGYC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	3 cut(s)	186, 221, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 69, 98, 129
BseBI	CCWGG	3 cut(s)	223, 464, 603
BseDI	CCNNGG	3 cut(s)	186, 221, 594
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	4 cut(s)	68, 69, 98, 129
BseMII	CTCAG	3 cut(s)	101, 276, 381
BseRI	GAGGAG	2 cut(s)	141, 665
BseXI	GCAGC	1 cut(s)	652
Bsh1236I	CGCG	1 cut(s)	714
BshFI	GGCC	3 cut(s)	119, 191, 702
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	594
BsiSI	CCGG	2 cut(s)	196, 595
BslI	CCNNNNNNNGG	4 cut(s)	68, 69, 98, 129
BsmAI	GTCTC	1 cut(s)	595
BsnI	GGCC	3 cut(s)	119, 191, 702
Bso31I	GGTCTC	1 cut(s)	595
BsoBI	CYCGRG	1 cut(s)	594
Bsp1286I	GDGCHC	2 cut(s)	104, 246
BspACI	CCGC	4 cut(s)	168, 171, 192, 322
BspANI	GGCC	3 cut(s)	119, 191, 702
BspCNI	CTCAG	3 cut(s)	102, 277, 382
BspFNI	CGCG	1 cut(s)	714
BspLI	GGNNCC	2 cut(s)	600, 607
BspTNI	GGTCTC	1 cut(s)	595
BssECI	CCNNGG	3 cut(s)	186, 221, 594
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	223, 464, 603
Bst4CI	ACNGT	2 cut(s)	229, 349
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	4 cut(s)	110, 285, 390, 578
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	1 cut(s)	714
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstMAI	GTCTC	1 cut(s)	595
BstNI	CCWGG	3 cut(s)	223, 464, 603
BstSCI	CCNGG	6 cut(s)	194, 221, 462, 593, 594, 601
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	1 cut(s)	174
BstXI	CCANNNNNNTGG	2 cut(s)	229, 256
BsuRI	GGCC	3 cut(s)	119, 191, 702
BtsCI	GGATG	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	142
CfoI	GCGC	1 cut(s)	272
Cfr9I	CCCGGG	1 cut(s)	594
CseI	GACGC	2 cut(s)	97, 703
Csp6I	GTAC	3 cut(s)	145, 304, 575
CviAII	CATG	1 cut(s)	266
CviQI	GTAC	3 cut(s)	145, 304, 575
DdeI	CTNAG	4 cut(s)	110, 285, 390, 578
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	104, 246
Eco31I	GGTCTC	1 cut(s)	595
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	3 cut(s)	221, 462, 601
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	104, 246
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	269
FaiI	YATR	7 cut(s)	267, 297, 368, 422, 440, 507, 727
FatI	CATG	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	168, 171, 192, 666
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	2 cut(s)	104, 246
Fsp4HI	GCNGC	4 cut(s)	168, 171, 192, 666
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	4 cut(s)	168, 171, 192, 666
GsuI	CTGGAG	2 cut(s)	106, 530
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	119, 191, 702
HapII	CCGG	2 cut(s)	196, 595
HgaI	GACGC	2 cut(s)	97, 703
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	2 cut(s)	487, 718
HindII	GTYRAC	2 cut(s)	487, 718
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	2 cut(s)	201, 473
HpaII	CCGG	2 cut(s)	196, 595
HphI	GGTGA	5 cut(s)	24, 38, 238, 301, 427
Hpy166II	GTNNAC	4 cut(s)	205, 418, 487, 718
Hpy188I	TCNGA	3 cut(s)	111, 562, 649
Hpy188III	TCNNGA	3 cut(s)	123, 309, 547
Hpy8I	GTNNAC	4 cut(s)	205, 418, 487, 718
Hpy99I	CGWCG	2 cut(s)	10, 91
HpyAV	CCTTC	3 cut(s)	53, 274, 692
HpyCH4III	ACNGT	2 cut(s)	229, 349
HpyCH4V	TGCA	4 cut(s)	136, 359, 521, 584
HpyF3I	CTNAG	4 cut(s)	110, 285, 390, 578
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	1 cut(s)	270
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	5 cut(s)	30, 64, 334, 453, 529
MboII	GAAGA	6 cut(s)	170, 174, 272, 324, 365, 482
MhlI	GDGCHC	2 cut(s)	104, 246
MluCI	AATT	2 cut(s)	479, 708
MlyI	GAGTC	2 cut(s)	210, 482
MmeI	TCCRAC	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	554
MspI	CCGG	2 cut(s)	196, 595
MspR9I	CCNGG	6 cut(s)	196, 223, 464, 595, 596, 603
MvaI	CCWGG	3 cut(s)	223, 464, 603
MvnI	CGCG	1 cut(s)	714
NciI	CCSGG	3 cut(s)	196, 595, 596
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	2 cut(s)	600, 607
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	3 cut(s)	30, 64, 453
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	554
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	4 cut(s)	169, 172, 193, 667
PleI	GAGTC	2 cut(s)	209, 481
PpsI	GAGTC	2 cut(s)	209, 481
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	3 cut(s)	221, 462, 601
PspGI	CCWGG	3 cut(s)	221, 462, 601
PspN4I	GGNNCC	2 cut(s)	600, 607
PstNI	CAGNNNCTG	1 cut(s)	142
RsaI	GTAC	3 cut(s)	146, 305, 576
RsaNI	GTAC	3 cut(s)	145, 304, 575
SacI	GAGCTC	1 cut(s)	246
SatI	GCNGC	4 cut(s)	168, 171, 192, 666
ScaI	AGTACT	1 cut(s)	305
SchI	GAGTC	2 cut(s)	210, 482
ScrFI	CCNGG	6 cut(s)	196, 223, 464, 595, 596, 603
SduI	GDGCHC	2 cut(s)	104, 246
SetI	ASST	9 cut(s)	246, 291, 381, 417, 555, 576, 591, 611, 667
SfaNI	GCATC	1 cut(s)	346
SmaI	CCCGGG	1 cut(s)	596
Sse9I	AATT	2 cut(s)	479, 708
SsiI	CCGC	4 cut(s)	168, 171, 192, 322
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	6 cut(s)	194, 221, 462, 593, 594, 601
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	229, 349
TasI	AATT	2 cut(s)	479, 708
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	3 cut(s)	170, 173, 194
TseFI	GTSAC	3 cut(s)	30, 64, 453
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	3 cut(s)	30, 64, 453
TspMI	CCCGGG	1 cut(s)	594
XapI	RAATTY	1 cut(s)	708
XmaI	CCCGGG	1 cut(s)	594
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	1 cut(s)	618
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.