AT3G52570

Alpha beta hydrolase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014370
Physical Location & Seq
Forward (+)
19501130 .. 19503027
1898 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52570.1

Sequence Viewer

Length: 1008 bp
ATGGCGAGAACGAGAATTATAACGAACCGATTTGAATCTCGCTTTTTGATTCGTTTCCTTGAATCTCCGACTCTATTCGCCTCTTGTTTCACGAGTTCCAGATCTCTTCAAACCCTAGCCTACGAAGAAGTCCGAACCTCCGGTGATCGGGAGTCTGAATCTACAGCTCTCATCCTTCATGGCCTCCTCGGTTCCGGTCGCAACTGGAGATCGTTTTCTCGCTCCCTTGCATCATCTCTCTCCGTCTCCTCTGCTTCTGATTGGAAGATGATATTGGTTGATCTGAGGAACCATGGGAGATCTGCGGAAGTGGAAGGGCTTAATCCGCCTCATGATCTTGTGAATTCAGCTAAGGATTTAGCTGATTTGGTTAAAGCAAGTGGCTGGAATTGGCCTGATGTGGTCATTGGTCACTCTTTGGGAGGTAAAGTGGCGTTGCAGTTCATGGAGAGTTGTGCTCGTGGTGATTTTGGTGAATCTGCTTCTCCTCCTAAACAGCTATGGGTACTAGACTCTGTCCCTGGGGAAGTCAAGGCAGAAAAAAGTGATGGTGAAGTAGAGAAAGTTCTGAAGACTTTGCAGAGTTTACCTTCATCAATCCCTTCTCGCAAGTGGCTTGTTGATCGTATGGTCGAACTTGGGTTTTCAAGATCATTATCCGAGTGGATTGGCAGCAATCTCAAGAGATCTGGAGACTCAGAGACATGGACCTTTAACCTTGACGGAGCTGTCCAAATGTTCAACTCTTACAGAGAGACTTCTTACTGGTCTTTGCTAGAGAACCCGCCAAAAGAGACAGAGATAAATTTTGTGATTGCAGAAAAGAGTGACCGATGGGACAACGATACAACCAAGCGGCTTGAAACAATAGCTAACCAGAGACAGAATGTAGCCGAAGGGAAGGTTGCGACTCATCTTCTTCGTAACTCTGGCCATTGGGTACACACAGACAATCCAAAGGGACTCCTAGAGATTGTGAGTCCCAACTTCTTCTCCCCACACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

335

Amino Acids

37.53

Weight (kDa)

6.11

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 57 - 323 5.6e-16 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 57 - 148 1.3e-10 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52570
fragaria_vesca FvH4_6g19320
malus_domestica MD12G1028900.v1.1
prunus_persica Prupe.7G102600_v2.0.a1 Prupe.7G102600_v2.0.a1
pyrus_communis pycom12g02770 pycom14g02720
rosa_chinensis RchiOBHm_Chr3g0474561
rosa_laevigata RLG00000023911
rosa_multiflora Rmu_sc0000535.1_g000018
rosa_roxburghii Rroxscaffold_6G00407070
rosa_rugosa Rorug03G0141500
rosa_samantha Rh3AG192200 Rh3BG222100 Rh3CG216800 Rh3DG217600
rosa_wichuraiana Rw3G017540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 20
AasI GACNNNNNNGTC 1 cut(s) 728
AciI CCGC 4 cut(s) 305, 326, 785, 856
AcoI YGGCCR 1 cut(s) 931
AcsI RAATTY 2 cut(s) 343, 805
AcuI CTGAAG 1 cut(s) 590
AfaI GTAC 2 cut(s) 507, 942
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 6 cut(s) 35, 62, 110, 648, 742, 863
AjnI CCWGG 1 cut(s) 520
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 6 cut(s) 167, 350, 362, 499, 728, 872
AluI AGCT 6 cut(s) 167, 350, 362, 499, 728, 872
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 6 cut(s) 250, 687, 695, 749, 788, 874
AoxI GGCC 3 cut(s) 181, 392, 931
ApeKI GCWGC 1 cut(s) 672
ApoI RAATTY 2 cut(s) 343, 805
AspS9I GGNCC 1 cut(s) 708
AsuHPI GGTGA 4 cut(s) 155, 476, 485, 563
AvaII GGWCC 1 cut(s) 708
BalI TGGCCA 1 cut(s) 933
BauI CACGAG 3 cut(s) 91, 459, 1001
BbsI GAAGAC 1 cut(s) 578
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 1 cut(s) 684
BccI CCATC 2 cut(s) 542, 828
BciT130I CCWGG 1 cut(s) 522
BcoDI GTCTC 6 cut(s) 250, 687, 695, 749, 788, 874
BfaI CTAG 4 cut(s) 116, 509, 776, 968
BfmI CTRYAG 1 cut(s) 162
BglII AGATCT 3 cut(s) 101, 299, 686
BisI GCNGC 2 cut(s) 673, 857
BlsI GCNGC 2 cut(s) 674, 858
Bme1390I CCNGG 1 cut(s) 522
Bme18I GGWCC 1 cut(s) 708
BmgT120I GGNCC 1 cut(s) 708
BmiI GGNNCC 2 cut(s) 193, 290
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 578
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpmI CTGGAG 2 cut(s) 226, 711
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 665
BsaBI GATNNNNATC 2 cut(s) 34, 655
BsaJI CCNNGG 4 cut(s) 187, 292, 520, 521
BsaWI WCCGGW 2 cut(s) 140, 194
BsaXI ACNNNNNCTCC 4 cut(s) 414, 444, 977, 1007
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 209, 770
Bse8I GATNNNNATC 2 cut(s) 34, 655
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 4 cut(s) 187, 292, 520, 521
BseGI GGATG 1 cut(s) 171
BseJI GATNNNNATC 2 cut(s) 34, 655
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 275, 711
BseNI ACTGG 2 cut(s) 209, 770
BseRI GAGGAG 3 cut(s) 176, 238, 477
BseXI GCAGC 1 cut(s) 684
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 3 cut(s) 183, 394, 933
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 460
BsiSI CCGG 2 cut(s) 141, 195
BslFI GGGAC 4 cut(s) 503, 851, 966, 975
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 6 cut(s) 250, 687, 695, 749, 788, 874
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 4 cut(s) 503, 851, 966, 975
BsnI GGCC 3 cut(s) 183, 394, 933
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 9 cut(s) 101, 145, 209, 280, 299, 334, 622, 650, 686
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 4 cut(s) 305, 326, 785, 856
BspANI GGCC 3 cut(s) 183, 394, 933
BspCNI CTCAG 2 cut(s) 276, 710
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 193, 290
BsrI ACTGG 2 cut(s) 209, 770
BssECI CCNNGG 4 cut(s) 187, 292, 520, 521
BssMI GATC 9 cut(s) 101, 145, 209, 280, 299, 334, 622, 650, 686
BssSI CACGAG 3 cut(s) 91, 459, 1001
BssT1I CCWWGG 1 cut(s) 292
Bst2BI CACGAG 3 cut(s) 91, 459, 1001
Bst2UI CCWGG 1 cut(s) 522
Bst6I CTCTTC 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 284, 351, 697
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 9 cut(s) 104, 148, 212, 283, 302, 337, 625, 653, 689
BstMAI GTCTC 6 cut(s) 250, 687, 695, 749, 788, 874
BstMBI GATC 9 cut(s) 101, 145, 209, 280, 299, 334, 622, 650, 686
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 684
BstV2I GAAGAC 1 cut(s) 578
BstX2I RGATCY 3 cut(s) 101, 299, 686
BstYI RGATCY 3 cut(s) 101, 299, 686
BsuRI GGCC 3 cut(s) 183, 394, 933
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 1 cut(s) 171
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 708
Csp6I GTAC 2 cut(s) 506, 941
CviAII CATG 5 cut(s) 179, 293, 332, 445, 705
CviQI GTAC 2 cut(s) 506, 941
DdeI CTNAG 3 cut(s) 284, 351, 697
DpnI GATC 9 cut(s) 103, 147, 211, 282, 301, 336, 624, 652, 688
DpnII GATC 9 cut(s) 101, 145, 209, 280, 299, 334, 622, 650, 686
DrdI GACNNNNNNGTC 1 cut(s) 728
DseDI GACNNNNNNGTC 1 cut(s) 728
EaeI YGGCCR 1 cut(s) 931
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 708
Eco57I CTGAAG 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 5 cut(s) 182, 296, 335, 448, 708
FaiI YATR 8 cut(s) 20, 180, 294, 333, 446, 502, 629, 706
FaqI GGGAC 4 cut(s) 503, 851, 966, 975
FatI CATG 5 cut(s) 178, 292, 331, 444, 704
FauI CCCGC 1 cut(s) 792
Fnu4HI GCNGC 2 cut(s) 673, 857
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 673, 857
FspBI CTAG 4 cut(s) 116, 509, 776, 968
GluI GCNGC 2 cut(s) 673, 857
GsuI CTGGAG 2 cut(s) 226, 711
HaeIII GGCC 3 cut(s) 183, 394, 933
HapII CCGG 2 cut(s) 141, 195
Hin1II CATG 5 cut(s) 182, 296, 335, 448, 708
HpaII CCGG 2 cut(s) 141, 195
HphI GGTGA 4 cut(s) 155, 476, 485, 563
Hpy166II GTNNAC 2 cut(s) 587, 943
Hpy188I TCNGA 8 cut(s) 69, 134, 157, 259, 285, 570, 661, 700
Hpy188III TCNNGA 7 cut(s) 91, 99, 149, 332, 648, 682, 690
Hpy8I GTNNAC 2 cut(s) 587, 943
HpyAV CCTTC 6 cut(s) 185, 308, 600, 612, 890, 895
HpyCH4V TGCA 4 cut(s) 230, 439, 580, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 3 cut(s) 284, 351, 697
Hsp92II CATG 5 cut(s) 182, 296, 335, 448, 708
Kzo9I GATC 9 cut(s) 101, 145, 209, 280, 299, 334, 622, 650, 686
LmnI GCTCC 2 cut(s) 227, 725
Lsp1109I GCAGC 1 cut(s) 684
LweI GCATC 1 cut(s) 239
MaeI CTAG 4 cut(s) 116, 509, 776, 968
MaeIII GTNAC 3 cut(s) 410, 827, 923
MalI GATC 9 cut(s) 103, 147, 211, 282, 301, 336, 624, 652, 688
MboI GATC 9 cut(s) 101, 145, 209, 280, 299, 334, 622, 650, 686
MboII GAAGA 7 cut(s) 98, 137, 277, 583, 908, 911, 982
MflI RGATCY 3 cut(s) 101, 299, 686
MhlI GDGCHC 1 cut(s) 460
MlsI TGGCCA 1 cut(s) 933
MluCI AATT 4 cut(s) 15, 343, 388, 805
MluNI TGGCCA 1 cut(s) 933
MlyI GAGTC 7 cut(s) 64, 161, 506, 689, 904, 957, 988
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 9 cut(s) 91, 148, 194, 197, 259, 279, 339, 416, 498
Mox20I TGGCCA 1 cut(s) 933
MscI TGGCCA 1 cut(s) 933
MseI TTAA 3 cut(s) 321, 372, 714
Msp20I TGGCCA 1 cut(s) 933
MspI CCGG 2 cut(s) 141, 195
MspR9I CCNGG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 522
MwoI GCNNNNNNNGC 1 cut(s) 325
NcoI CCATGG 1 cut(s) 292
NdeII GATC 9 cut(s) 101, 145, 209, 280, 299, 334, 622, 650, 686
NlaIII CATG 5 cut(s) 182, 296, 335, 448, 708
NlaIV GGNNCC 2 cut(s) 193, 290
NmuCI GTSAC 2 cut(s) 410, 827
PagI TCATGA 1 cut(s) 331
PasI CCCWGGG 1 cut(s) 521
PfeI GAWTC 5 cut(s) 35, 49, 62, 158, 476
PflFI GACNNNGTC 1 cut(s) 515
PkrI GCNGC 2 cut(s) 674, 858
PleI GAGTC 7 cut(s) 64, 160, 506, 689, 904, 957, 987
PpsI GAGTC 7 cut(s) 64, 160, 506, 689, 904, 957, 987
PsiI TTATAA 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PspN4I GGNNCC 2 cut(s) 193, 290
PspPI GGNCC 1 cut(s) 708
PsrI GAACNNNNNNTAC 2 cut(s) 549, 581
PsuI RGATCY 3 cut(s) 101, 299, 686
PsyI GACNNNGTC 1 cut(s) 515
RsaI GTAC 2 cut(s) 507, 942
RsaNI GTAC 2 cut(s) 506, 941
SaqAI TTAA 3 cut(s) 321, 372, 714
SatI GCNGC 2 cut(s) 673, 857
Sau3AI GATC 9 cut(s) 101, 145, 209, 280, 299, 334, 622, 650, 686
Sau96I GGNCC 1 cut(s) 708
SchI GAGTC 7 cut(s) 64, 161, 506, 689, 904, 957, 988
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 1 cut(s) 460
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 708
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 4 cut(s) 15, 343, 388, 805
SsiI CCGC 4 cut(s) 305, 326, 785, 856
SspMI CTAG 4 cut(s) 116, 509, 776, 968
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 1 cut(s) 292
TaqI TCGA 1 cut(s) 633
TaqII GACCGA 1 cut(s) 846
TasI AATT 4 cut(s) 15, 343, 388, 805
TauI GCSGC 1 cut(s) 859
TfiI GAWTC 5 cut(s) 35, 49, 62, 158, 476
Tru1I TTAA 3 cut(s) 321, 372, 714
Tru9I TTAA 3 cut(s) 321, 372, 714
TseFI GTSAC 2 cut(s) 410, 827
TseI GCWGC 1 cut(s) 672
Tsp45I GTSAC 2 cut(s) 410, 827
TspDTI ATGAA 3 cut(s) 167, 433, 582
TspGWI ACGGA 2 cut(s) 232, 738
Tth111I GACNNNGTC 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 708
XapI RAATTY 2 cut(s) 343, 805
XspI CTAG 4 cut(s) 116, 509, 776, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.