Rroxscaffold_6G00407070

Alpha beta hydrolase domain-containing protein 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014370
Physical Location & Seq
Forward (+)
29624212 .. 29626349
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407070.1

Sequence Viewer

Length: 969 bp
ATGGCCAGAACCCTCCTTAACAAACCGGGTTTTCACCACCTCCTGACCCGATTCACATCCTCACGTCGGTCACTGCAAACCCTAGCCTACGAAGAAGTCCGAGCTACCACCACCACACCCTACCACTCCACCGCTTTTGTACTCCACGGCCTTCTCGGCTCCGCCAGAAACTGGAGATCTTTCTCCCGCGCCCTCCTCTCCAATGTCTCCGATCCATCTGGATGGAGAATGGTGCTTGTGGATTTAAGGAACCATGGGAAATCAGCTGAAATTGAAGGTCTGAACCCACCTCATGATTTGGTCAATGCAGCCCAAGATTTGGCTAATTTGATTAAGTCTGAGAATTGGGCTTGGCCCGACGTTGTTCTTGGTCATTCCATGGGTGGTAAGGTGGCTCTGCAATTTGCTGAGAGCTGTGCTCGTGGCCACTATGGTGATTGTGCTAAGTTGCCAAAACAGCTGTGGGTATTGGATTCTGTTCCAGGAGAAGTGAACCCTATACACAGTAATGGGGACGTTGAGAGAGTTTTGAAGACATTGCAGGGTCTACCTTCAACAGTTCCATCACGAAAGTGGCTTGTAAATCATATGATTGAACTTGGGTTCTCAAAATCATTGTCAGAATGGATAGGCACCAACCTCAAGAAAGTTGGAGATCATGAGACATGGTCATTCAATCTTGATGGTGCTGTGGAGATGTTCAAATCTTACGGGGAGAAGTCTTACATGCCTCTGTTGGAGCATCCCCCAAAAGATATGGAAATAGCTATTGTGCGTGCTGAGAACAGTGACCGTTGGGACCCAGATGTGATTCAGCAGCTTGAAAGCCTCGCTAGTCGGGAAAGAGATGGGTCGGAGGGGAAGGTTTCACTTAATGTTCTTCCCAAGTCAGGCCATTGGGTTCACGTGGATAATCCAAAAGGTCTTCTCGAGATTGTGGCACCTAAGATTTCAACCCTTTCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

322

Amino Acids

35.83

Weight (kDa)

6.93

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 46 - 140 1.4e-07 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 47 - 310 2.7e-16 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 47 - 137 9.1e-11 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52570
fragaria_vesca FvH4_6g19320
malus_domestica MD12G1028900.v1.1
prunus_persica Prupe.7G102600_v2.0.a1 Prupe.7G102600_v2.0.a1
pyrus_communis pycom12g02770 pycom14g02720
rosa_chinensis RchiOBHm_Chr3g0474561
rosa_laevigata RLG00000023911
rosa_multiflora Rmu_sc0000535.1_g000018
rosa_roxburghii Rroxscaffold_6G00407070
rosa_rugosa Rorug03G0141500
rosa_samantha Rh3AG192200 Rh3BG222100 Rh3CG216800 Rh3DG217600
rosa_wichuraiana Rw3G017540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 632, 940
AccB7I CCANNNNNTGG 2 cut(s) 171, 319
AccI GTMKAC 1 cut(s) 547
AccII CGCG 1 cut(s) 189
AciI CCGC 3 cut(s) 132, 162, 187
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 2 cut(s) 3, 424
AcvI CACGTG 1 cut(s) 907
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 4 cut(s) 66, 171, 319, 890
AgsI TTSAA 8 cut(s) 275, 532, 555, 596, 676, 703, 824, 954
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 1 cut(s) 481
AleI CACNNNNGTG 2 cut(s) 432, 571
AluBI AGCT 6 cut(s) 104, 266, 414, 460, 767, 820
AluI AGCT 6 cut(s) 104, 266, 414, 460, 767, 820
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 211, 656
AlwI GGATC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 929
AoxI GGCC 5 cut(s) 3, 148, 353, 424, 892
ApeKI GCWGC 2 cut(s) 308, 817
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspLEI GCGC 1 cut(s) 191
AspS9I GGNCC 2 cut(s) 354, 799
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 26, 446
AvaI CYCGRG 1 cut(s) 929
AvaII GGWCC 1 cut(s) 799
BalI TGGCCA 2 cut(s) 5, 426
BanI GGYRCC 2 cut(s) 632, 940
BauI CACGAG 1 cut(s) 420
BbrPI CACGTG 1 cut(s) 907
BbsI GAAGAC 2 cut(s) 539, 917
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 2 cut(s) 320, 829
BccI CCATC 5 cut(s) 216, 223, 571, 677, 842
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 211, 656
BfaI CTAG 2 cut(s) 83, 834
BglI GCCNNNNNGGC 1 cut(s) 156
BglII AGATCT 1 cut(s) 176
BisI GCNGC 2 cut(s) 309, 818
BlsI GCNGC 2 cut(s) 310, 819
Bme1390I CCNGG 2 cut(s) 27, 483
Bme18I GGWCC 1 cut(s) 799
BmeT110I CYCGRG 1 cut(s) 929
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 354, 799
BmiI GGNNCC 6 cut(s) 160, 251, 634, 800, 801, 942
BmrFI CCNGG 2 cut(s) 27, 483
BmsI GCATC 1 cut(s) 751
BpiI GAAGAC 2 cut(s) 539, 917
BplI GAGNNNNNCTC 2 cut(s) 403, 435
BpmI CTGGAG 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 907
BsaBI GATNNNNATC 1 cut(s) 55
BsaJI CCNNGG 3 cut(s) 145, 253, 378
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 171, 319, 890
Bse1I ACTGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 536
Bse8I GATNNNNATC 1 cut(s) 55
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 3 cut(s) 145, 253, 378
BseGI GGATG 3 cut(s) 56, 227, 742
BseJI GATNNNNATC 1 cut(s) 55
BseLI CCNNNNNNNGG 4 cut(s) 66, 171, 319, 890
BseMI GCAATG 1 cut(s) 536
BseMII CTCAG 3 cut(s) 330, 399, 771
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 320, 829
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 5 cut(s) 5, 150, 355, 426, 894
BshNI GGYRCC 2 cut(s) 632, 940
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 2 cut(s) 527, 812
BslI CCNNNNNNNGG 4 cut(s) 66, 171, 319, 890
BsmAI GTCTC 2 cut(s) 211, 656
BsmFI GGGAC 2 cut(s) 527, 812
BsnI GGCC 5 cut(s) 5, 150, 355, 426, 894
BsoBI CYCGRG 1 cut(s) 929
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 3 cut(s) 176, 211, 655
Bsp19I CCATGG 2 cut(s) 253, 378
BspACI CCGC 3 cut(s) 132, 162, 187
BspANI GGCC 5 cut(s) 5, 150, 355, 426, 894
BspCNI CTCAG 3 cut(s) 331, 400, 772
BspFNI CGCG 1 cut(s) 189
BspHI TCATGA 2 cut(s) 292, 658
BspLI GGNNCC 6 cut(s) 160, 251, 634, 800, 801, 942
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 2 cut(s) 632, 940
BsrDI GCAATG 1 cut(s) 536
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 145, 253, 378
BssMI GATC 3 cut(s) 176, 211, 655
BssSI CACGAG 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 253, 378
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 4 cut(s) 506, 559, 788, 794
BstBAI YACGTR 1 cut(s) 907
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 6 cut(s) 339, 408, 444, 780, 945, 966
BstDSI CCRYGG 3 cut(s) 145, 253, 378
BstF5I GGATG 3 cut(s) 56, 227, 742
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 3 cut(s) 179, 214, 658
BstMAI GTCTC 2 cut(s) 211, 656
BstMBI GATC 3 cut(s) 176, 211, 655
BstMWI GCNNNNNNNGC 2 cut(s) 156, 457
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 2 cut(s) 25, 481
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 320, 829
BstV2I GAAGAC 2 cut(s) 539, 917
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 222
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 5 cut(s) 5, 150, 355, 426, 894
BtgI CCRYGG 3 cut(s) 145, 253, 378
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 3 cut(s) 56, 227, 742
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 71, 793
Cac8I GCNNGC 1 cut(s) 777
CaiI CAGNNNCTG 1 cut(s) 171
CciI TCATGA 2 cut(s) 292, 658
CfoI GCGC 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 354, 799
Csp6I GTAC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 6 cut(s) 254, 293, 379, 659, 666, 727
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 6 cut(s) 339, 408, 444, 780, 945, 966
DpnI GATC 3 cut(s) 178, 213, 657
DpnII GATC 3 cut(s) 176, 211, 655
EaeI YGGCCR 2 cut(s) 3, 424
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 253, 378
Eco47I GGWCC 1 cut(s) 799
Eco72I CACGTG 1 cut(s) 907
Eco88I CYCGRG 1 cut(s) 929
EcoO109I RGGNCCY 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 253, 378
ErhI CCWWGG 2 cut(s) 253, 378
FaeI CATG 6 cut(s) 257, 296, 382, 662, 669, 730
FaqI GGGAC 2 cut(s) 527, 812
FatI CATG 6 cut(s) 253, 292, 378, 658, 665, 726
FauI CCCGC 1 cut(s) 194
FauNDI CATATG 1 cut(s) 588
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 309, 818
FokI GGATG 3 cut(s) 43, 234, 729
Fsp4HI GCNGC 2 cut(s) 309, 818
FspBI CTAG 2 cut(s) 83, 834
GlaI GCGC 1 cut(s) 190
GluI GCNGC 2 cut(s) 309, 818
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 5 cut(s) 5, 150, 355, 426, 894
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 191
Hin1II CATG 6 cut(s) 257, 296, 382, 662, 669, 730
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HinfI GANTC 3 cut(s) 51, 473, 811
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 26, 446
Hpy166II GTNNAC 3 cut(s) 493, 548, 904
Hpy188I TCNGA 6 cut(s) 101, 211, 282, 340, 622, 856
Hpy8I GTNNAC 3 cut(s) 493, 548, 904
Hpy99I CGWCG 2 cut(s) 69, 362
HpyAV CCTTC 4 cut(s) 161, 269, 561, 856
HpyCH4III ACNGT 4 cut(s) 506, 559, 788, 794
HpyCH4IV ACGT 4 cut(s) 64, 360, 516, 906
HpyCH4V TGCA 4 cut(s) 76, 308, 400, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 457
HpyF3I CTNAG 6 cut(s) 339, 408, 444, 780, 945, 966
HpySE526I ACGT 4 cut(s) 64, 360, 516, 906
Hsp92II CATG 6 cut(s) 257, 296, 382, 662, 669, 730
HspAI GCGC 1 cut(s) 189
KflI GGGWCCC 1 cut(s) 799
Kzo9I GATC 3 cut(s) 176, 211, 655
LmnI GCTCC 2 cut(s) 164, 739
Lsp1109I GCAGC 2 cut(s) 320, 829
LweI GCATC 1 cut(s) 751
MaeI CTAG 2 cut(s) 83, 834
MaeII ACGT 4 cut(s) 64, 360, 516, 906
MaeIII GTNAC 2 cut(s) 69, 788
MalI GATC 3 cut(s) 178, 213, 657
MboI GATC 3 cut(s) 176, 211, 655
MboII GAAGA 4 cut(s) 104, 544, 872, 917
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 421
MlsI TGGCCA 2 cut(s) 5, 426
MluCI AATT 4 cut(s) 270, 325, 343, 401
MluNI TGGCCA 2 cut(s) 5, 426
MmeI TCCRAC 3 cut(s) 631, 717, 834
Mox20I TGGCCA 2 cut(s) 5, 426
MscI TGGCCA 2 cut(s) 5, 426
MseI TTAA 4 cut(s) 18, 245, 333, 873
MslI CAYNNNNRTG 4 cut(s) 220, 432, 507, 571
Msp20I TGGCCA 2 cut(s) 5, 426
MspA1I CMGCKG 2 cut(s) 266, 460
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 27, 483
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 156, 457
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 2 cut(s) 253, 378
NdeI CATATG 1 cut(s) 588
NdeII GATC 3 cut(s) 176, 211, 655
NlaIII CATG 6 cut(s) 257, 296, 382, 662, 669, 730
NlaIV GGNNCC 6 cut(s) 160, 251, 634, 800, 801, 942
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 69, 788
NspI RCATGY 1 cut(s) 730
OliI CACNNNNGTG 2 cut(s) 432, 571
PaeR7I CTCGAG 1 cut(s) 929
PagI TCATGA 2 cut(s) 292, 658
PfeI GAWTC 3 cut(s) 51, 473, 811
PflFI GACNNNGTC 1 cut(s) 667
PflMI CCANNNNNTGG 2 cut(s) 171, 319
PfoI TCCNGGA 1 cut(s) 481
PkrI GCNGC 2 cut(s) 310, 819
PmaCI CACGTG 1 cut(s) 907
PmlI CACGTG 1 cut(s) 907
Ppu21I YACGTR 1 cut(s) 907
PpuMI RGGWCCY 1 cut(s) 799
Psp5II RGGWCCY 1 cut(s) 799
Psp6I CCWGG 1 cut(s) 481
PspCI CACGTG 1 cut(s) 907
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 6 cut(s) 160, 251, 634, 800, 801, 942
PspPI GGNCC 2 cut(s) 354, 799
PspPPI RGGWCCY 1 cut(s) 799
PstNI CAGNNNCTG 1 cut(s) 171
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 667
PvuII CAGCTG 2 cut(s) 266, 460
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 4 cut(s) 220, 432, 507, 571
SaqAI TTAA 4 cut(s) 18, 245, 333, 873
SatI GCNGC 2 cut(s) 309, 818
Sau3AI GATC 3 cut(s) 176, 211, 655
Sau96I GGNCC 2 cut(s) 354, 799
ScrFI CCNGG 2 cut(s) 27, 483
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 1 cut(s) 751
Sfr274I CTCGAG 1 cut(s) 929
SinI GGWCC 1 cut(s) 799
SlaI CTCGAG 1 cut(s) 929
SmiMI CAYNNNNRTG 4 cut(s) 220, 432, 507, 571
SmlI CTYRAG 2 cut(s) 641, 929
SmoI CTYRAG 2 cut(s) 641, 929
Sse9I AATT 4 cut(s) 270, 325, 343, 401
SsiI CCGC 3 cut(s) 132, 162, 187
SspMI CTAG 2 cut(s) 83, 834
StyD4I CCNGG 2 cut(s) 25, 481
StyI CCWWGG 2 cut(s) 253, 378
TaaI ACNGT 4 cut(s) 506, 559, 788, 794
TaiI ACGT 4 cut(s) 67, 363, 519, 909
TaqI TCGA 1 cut(s) 930
TaqII GACCGA 1 cut(s) 57
TasI AATT 4 cut(s) 270, 325, 343, 401
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 3 cut(s) 51, 473, 811
Tru1I TTAA 4 cut(s) 18, 245, 333, 873
Tru9I TTAA 4 cut(s) 18, 245, 333, 873
TscAI CASTG 2 cut(s) 78, 793
TseFI GTSAC 2 cut(s) 69, 788
TseI GCWGC 2 cut(s) 308, 817
Tsp45I GTSAC 2 cut(s) 69, 788
TspRI CASTG 2 cut(s) 78, 793
Tth111I GACNNNGTC 1 cut(s) 667
Van91I CCANNNNNTGG 2 cut(s) 171, 319
VpaK11BI GGWCC 1 cut(s) 799
XceI RCATGY 1 cut(s) 730
XcmI CCANNNNNNNNNTGG 2 cut(s) 459, 570
XhoI CTCGAG 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 2 cut(s) 83, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.