Rorug03G0141500

Alpha beta hydrolase domain-containing protein 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014370
Physical Location & Seq
Forward (+)
11650335 .. 11651030
696 bp
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UTR
Exon/CDS
Intron
Rorug03G0141500.1

Sequence Viewer

Length: 474 bp
ATGGTAGAGAGGAAAAGAGCCAGAGCTTCTTCGCCTTCGAGCCCTCTCGCCACCGTCGATGACATTCAGAGACGCCTCATGCGACCTTCCTCCGCCTCCTCTCCACCGCCGATCTCAACCTTATCATCCCCGCCGAAAGATCGCCGCGCGCAAATCCAGAAGCACTCGTCGCAGGCGAAGCTGAAAACGACGAATTATAAGCTCGACGATTACTTGGATCTGAATCTGCTCGCGGATGTGTCTTCGAGAATCGGCAGCGCGAAGAAGGTTGAAACGACGTCGCTGAAGAAAGAGGTCAGAGATTTCGAGTGGCCGGTCAACGAATTGAAGGTGCTGGTTGTGGAGTCGGGCAAGGAAGCTGTGAATCTCAACGACGACGTGGATCTGATCGAGGAAGTTGGGGACGGAGACGCAGAAACCTGTACGGCGTTTCGACGTTTCGAGCGAAGTGCCTTACGGCGTTTCAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

157

Amino Acids

17.69

Weight (kDa)

9.47

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52570
fragaria_vesca FvH4_6g19320
malus_domestica MD12G1028900.v1.1
prunus_persica Prupe.7G102600_v2.0.a1 Prupe.7G102600_v2.0.a1
pyrus_communis pycom12g02770 pycom14g02720
rosa_chinensis RchiOBHm_Chr3g0474561
rosa_laevigata RLG00000023911
rosa_multiflora Rmu_sc0000535.1_g000018
rosa_roxburghii Rroxscaffold_6G00407070
rosa_rugosa Rorug03G0141500
rosa_samantha Rh3AG192200 Rh3BG222100 Rh3CG216800 Rh3DG217600
rosa_wichuraiana Rw3G017540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AatII GACGTC 1 cut(s) 281
AccII CGCG 4 cut(s) 147, 149, 233, 260
AciI CCGC 5 cut(s) 93, 107, 131, 145, 233
AclWI GGATC 2 cut(s) 225, 390
AcoI YGGCCR 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 2 cut(s) 73, 278
AfaI GTAC 1 cut(s) 424
AgsI TTSAA 2 cut(s) 272, 328
AjiI CACGTC 1 cut(s) 379
AluBI AGCT 4 cut(s) 26, 181, 202, 359
AluI AGCT 4 cut(s) 26, 181, 202, 359
Alw26I GTCTC 2 cut(s) 64, 402
AlwI GGATC 2 cut(s) 225, 390
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 255
AspLEI GCGC 3 cut(s) 149, 151, 260
BanII GRGCYC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 267
BceAI ACGGC 1 cut(s) 441
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BcoDI GTCTC 2 cut(s) 64, 402
BisI GCNGC 2 cut(s) 145, 256
BlsI GCNGC 2 cut(s) 146, 257
BmgBI CACGTC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 2 cut(s) 73, 278
Bse118I RCCGGY 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 222
BseGI GGATG 2 cut(s) 125, 241
BseJI GATNNNNATC 1 cut(s) 222
BsePI GCGCGC 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 267
Bsh1236I CGCG 4 cut(s) 147, 149, 233, 260
BshFI GGCC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 416
BsmAI GTCTC 2 cut(s) 64, 402
BsmBI CGTCTC 2 cut(s) 64, 402
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 5 cut(s) 111, 139, 217, 382, 387
BspACI CCGC 5 cut(s) 93, 107, 131, 145, 233
BspANI GGCC 1 cut(s) 313
BspFNI CGCG 4 cut(s) 147, 149, 233, 260
BspPI GGATC 2 cut(s) 225, 390
BsrFI RCCGGY 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 313
BssHII GCGCGC 1 cut(s) 147
BssMI GATC 5 cut(s) 111, 139, 217, 382, 387
BssNI GRCGYC 2 cut(s) 73, 278
Bst4CI ACNGT 1 cut(s) 55
BstACI GRCGYC 2 cut(s) 73, 278
BstC8I GCNNGC 3 cut(s) 149, 174, 231
BstF5I GGATG 2 cut(s) 125, 241
BstFNI CGCG 4 cut(s) 147, 149, 233, 260
BstHHI GCGC 3 cut(s) 149, 151, 260
BstKTI GATC 5 cut(s) 114, 142, 220, 385, 390
BstMAI GTCTC 2 cut(s) 64, 402
BstMBI GATC 5 cut(s) 111, 139, 217, 382, 387
BstMWI GCNNNNNNNGC 2 cut(s) 169, 178
BstUI CGCG 4 cut(s) 147, 149, 233, 260
BstV1I GCAGC 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 2 cut(s) 217, 382
BstYI RGATCY 2 cut(s) 217, 382
BsuRI GGCC 1 cut(s) 313
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 2 cut(s) 125, 241
Cac8I GCNNGC 3 cut(s) 149, 174, 231
CfoI GCGC 3 cut(s) 149, 151, 260
Cfr10I RCCGGY 1 cut(s) 313
CseI GACGC 2 cut(s) 81, 419
Csp6I GTAC 1 cut(s) 423
CviAII CATG 1 cut(s) 79
CviJI RGCY 7 cut(s) 20, 26, 42, 181, 202, 313, 359
CviKI_1 RGCY 7 cut(s) 20, 26, 42, 181, 202, 313, 359
CviQI GTAC 1 cut(s) 423
DpnI GATC 5 cut(s) 113, 141, 219, 384, 389
DpnII GATC 5 cut(s) 111, 139, 217, 382, 387
EaeI YGGCCR 1 cut(s) 311
EciI GGCGGA 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 44
Esp3I CGTCTC 2 cut(s) 64, 402
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 198
FaqI GGGAC 1 cut(s) 416
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 145, 256
FokI GGATG 2 cut(s) 112, 248
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 145, 256
GlaI GCGC 3 cut(s) 148, 150, 259
GluI GCNGC 2 cut(s) 145, 256
HaeIII GGCC 1 cut(s) 313
HapII CCGG 1 cut(s) 314
HgaI GACGC 2 cut(s) 81, 419
HhaI GCGC 3 cut(s) 149, 151, 260
Hin1I GRCGYC 2 cut(s) 73, 278
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 3 cut(s) 147, 149, 258
HinP1I GCGC 3 cut(s) 147, 149, 258
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 4 cut(s) 223, 249, 344, 364
HpaII CCGG 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 5 cut(s) 69, 222, 299, 387, 467
Hpy188III TCNNGA 2 cut(s) 157, 246
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 9 cut(s) 59, 172, 193, 209, 280, 283, 377, 380, 438
HpyAV CCTTC 5 cut(s) 45, 96, 259, 322, 462
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 3 cut(s) 278, 378, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 178
HpySE526I ACGT 3 cut(s) 278, 378, 436
Hsp92I GRCGYC 2 cut(s) 73, 278
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 3 cut(s) 147, 149, 258
Kzo9I GATC 5 cut(s) 111, 139, 217, 382, 387
LpnPI CCDG 6 cut(s) 34, 158, 170, 320, 327, 433
Lsp1109I GCAGC 1 cut(s) 267
MaeII ACGT 3 cut(s) 278, 378, 436
MalI GATC 5 cut(s) 113, 141, 219, 384, 389
MboI GATC 5 cut(s) 111, 139, 217, 382, 387
MboII GAAGA 4 cut(s) 21, 234, 274, 298
MflI RGATCY 2 cut(s) 217, 382
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 2 cut(s) 193, 323
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 8 cut(s) 3, 54, 86, 100, 106, 109, 286, 385
MspI CCGG 1 cut(s) 314
MvnI CGCG 4 cut(s) 147, 149, 233, 260
MwoI GCNNNNNNNGC 2 cut(s) 169, 178
NdeII GATC 5 cut(s) 111, 139, 217, 382, 387
NlaIII CATG 1 cut(s) 82
PauI GCGCGC 1 cut(s) 147
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 79, 173, 442
PfeI GAWTC 3 cut(s) 223, 249, 364
PkrI GCNGC 2 cut(s) 146, 257
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PsiI TTATAA 1 cut(s) 198
PsuI RGATCY 2 cut(s) 217, 382
PteI GCGCGC 1 cut(s) 147
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
SatI GCNGC 2 cut(s) 145, 256
Sau3AI GATC 5 cut(s) 111, 139, 217, 382, 387
SchI GAGTC 1 cut(s) 353
SduI GDGCHC 1 cut(s) 44
Sse9I AATT 2 cut(s) 193, 323
SsiI CCGC 5 cut(s) 93, 107, 131, 145, 233
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 3 cut(s) 281, 381, 439
TaqI TCGA 8 cut(s) 38, 57, 204, 245, 306, 390, 433, 441
TasI AATT 2 cut(s) 193, 323
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 3 cut(s) 223, 249, 364
TseI GCWGC 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 420
ZraI GACGTC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.