RLG00000023911

Alpha beta hydrolase domain-containing protein 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014370
Physical Location & Seq
Forward (+)
29872123 .. 29878603
6481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023911

Sequence Viewer

Length: 1452 bp
ATGGCCAGAACCCTCCTTAACAAACCGGGTTTTCACCACCTCCTGACCCGATTCACATCCTCACGCCGGTCTTTGCAAACCCTAGCCTACGAAGAAGTCCGAGCTACCACCACCACACCCTACCACTCCACCGCTTTTGTACTCCACGGCCTTCTCGGCTCCGCCAGAAACTGGAGATCTTTCTCCCGCGCCCTCCTCTCCAATCTCTCCGATCCATCTGGATGGAGAATGGTGCTTGTGGATTTAAGGAACCATGGGAAATCAGCTGAAATTGAAGGTCTGAACCCACCTCATGATTTGGTCAATGCGGCCCAAGATTTGGCTAATTTGATAAAGTCTGAGAATTGGGCTTGGCCCGATGTTGTTCTTGGTCACTCCATGGGCGGTAAGGTGGCTCTACAATTTGCTCAGAGCTGTGCTCGTGGCCACTATGGTGATTACGCTAAGTTGCCAAAACAGCTGTGGGTATTGGATTCTGTTCCAGGAGAAGTGAACCCTATACACAGTAATGGGGACGTTGAGAGAGTTTTGAAGACATTGCAGGGTCTACCTTCAACAGTTCCATCACGAAAGTGGCTTGTAAATCATATGATTGAACTTGGGTTCTCAAAATCATTGTCAGAATGGATAGGCACCAACCTCAAGAAAGTTGGAGATCATGAGACATGGTCATTCAATCTTGATGGTGCTGTGGAGATGTTCAAATCTTACGGGGAGAAGTCTTATGTGCCTCTGTTGGAGCATCCCCCAAAAGATATGGAAATAGCTATTGTGCGTGCTGAGAACAGTGACCGTTGGGACCCAGATGTGATTCAGCAGCTTGAAAGCCTCGCTAGTCGGGAAAGAGATGGGTCAGAGGGGAAGGTTTCACTTAATGTTCTTCCCAAGTCAGGCCATTGGGTTCATGTGGATAATCCAAAAGCAGCAGCAAGGCTTTGCAAGGAGGGCTGTGAATTCAGACTTGTCCGCCCAAATCATCCACTCGCCGCCGCCGCCGCCATGTCGAAGAGGAAGGTCAGAGAGCCCAAGGAGGAGAATGTCACTCTTGGACCTGCTGTCCGTGATGGAGAGCATGTTTTTGGTGTCGCTCACATCTTTGCCTCCTTCAATGATACCTTCATTCATGTGACTGATTTGTCTGGGAGGGAAACTCTCGTTCGCATCACTGGTGGCATGAAGGTCAAGGCTGATAGGGATGAATCATCACCATATGCTGCCATGCTTGCAGCACAGGATGTTTCTACTCGGTGCAAGGAGCTTGGAATTACTGCCTTGCACATAAAGCTTCGGGCTACTGGAGGGAACAAGACCAAGACTCCTGGTCCAGGTGCTCAATCAGCTCTTAGAGCCCTTGCTCGTTCTGGGATGAGAATTGGTCGGATTGAGGATGTTACTCCAATTCCCACCGACAGTACTCGCCGAAAGGGTGGCAGAAGGGGTAGAAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

484

Amino Acids

53.36

Weight (kDa)

9.58

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 46 - 140 1.5e-07 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 47 - 311 2.7e-16 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 47 - 137 9.8e-11 alpha/beta hydrolase fold
Ribosomal_S11 PF00411 361 - 479 1.6e-45 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52570
fragaria_vesca FvH4_6g19320
malus_domestica MD12G1028900.v1.1
prunus_persica Prupe.7G102600_v2.0.a1 Prupe.7G102600_v2.0.a1
pyrus_communis pycom12g02770 pycom14g02720
rosa_chinensis RchiOBHm_Chr3g0474561
rosa_laevigata RLG00000023911
rosa_multiflora Rmu_sc0000535.1_g000018
rosa_roxburghii Rroxscaffold_6G00407070
rosa_rugosa Rorug03G0141500
rosa_samantha Rh3AG192200 Rh3BG222100 Rh3CG216800 Rh3DG217600
rosa_wichuraiana Rw3G017540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1135
Acc36I ACCTGC 1 cut(s) 1060
AccB1I GGYRCC 1 cut(s) 632
AccB7I CCANNNNNTGG 2 cut(s) 171, 319
AccI GTMKAC 1 cut(s) 547
AccII CGCG 1 cut(s) 189
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 2 cut(s) 3, 424
AcsI RAATTY 1 cut(s) 953
AfaI GTAC 2 cut(s) 141, 1414
AfiI CCNNNNNNNGG 5 cut(s) 66, 171, 319, 890, 1325
AgsI TTSAA 8 cut(s) 275, 532, 555, 596, 676, 703, 824, 1108
AhdI GACNNNNNGTC 2 cut(s) 1055, 1320
AjnI CCWGG 3 cut(s) 481, 1318, 1324
AleI CACNNNNGTG 2 cut(s) 432, 571
AluBI AGCT 9 cut(s) 104, 266, 414, 460, 767, 820, 1258, 1285, 1340
AluI AGCT 9 cut(s) 104, 266, 414, 460, 767, 820, 1258, 1285, 1340
Alw21I GWGCWC 2 cut(s) 421, 1333
Alw26I GTCTC 1 cut(s) 656
AlwI GGATC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 171
AoxI GGCC 6 cut(s) 3, 148, 309, 353, 424, 892
ApeKI GCWGC 5 cut(s) 817, 923, 926, 1214, 1226
ApoI RAATTY 1 cut(s) 953
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspLEI GCGC 1 cut(s) 191
AspS9I GGNCC 5 cut(s) 310, 354, 799, 1049, 1322
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 3 cut(s) 26, 446, 1197
AvaII GGWCC 3 cut(s) 799, 1049, 1322
BalI TGGCCA 2 cut(s) 5, 426
BanI GGYRCC 1 cut(s) 632
BanII GRGCYC 2 cut(s) 1026, 1351
BauI CACGAG 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 2 cut(s) 421, 1333
BbvI GCAGC 5 cut(s) 829, 935, 938, 1201, 1238
BccI CCATC 6 cut(s) 216, 223, 571, 677, 842, 1058
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 3 cut(s) 483, 1320, 1326
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 2 cut(s) 83, 834
BfuAI ACCTGC 1 cut(s) 1060
BglI GCCNNNNNGGC 1 cut(s) 156
BglII AGATCT 1 cut(s) 176
BmcAI AGTACT 1 cut(s) 1414
Bme1390I CCNGG 4 cut(s) 27, 483, 1320, 1326
Bme18I GGWCC 3 cut(s) 799, 1049, 1322
BmeRI GACNNNNNGTC 2 cut(s) 1055, 1320
BmgT120I GGNCC 5 cut(s) 310, 354, 799, 1049, 1322
BmiI GGNNCC 5 cut(s) 160, 251, 634, 800, 801
BmrFI CCNGG 4 cut(s) 27, 483, 1320, 1326
BmsI GCATC 2 cut(s) 751, 1170
BpiI GAAGAC 1 cut(s) 539
BplI GAGNNNNNCTC 4 cut(s) 403, 435, 1135, 1167
BpmI CTGGAG 2 cut(s) 193, 1317
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 55
BsaJI CCNNGG 4 cut(s) 145, 253, 378, 1026
BsaXI ACNNNNNCTCC 4 cut(s) 1059, 1089, 1300, 1330
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 171, 319, 890, 1325
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 3 cut(s) 176, 1171, 1300
Bse3DI GCAATG 1 cut(s) 536
Bse8I GATNNNNATC 1 cut(s) 55
BseBI CCWGG 3 cut(s) 483, 1320, 1326
BseDI CCNNGG 4 cut(s) 145, 253, 378, 1026
BseGI GGATG 8 cut(s) 56, 227, 742, 976, 1201, 1240, 1371, 1393
BseJI GATNNNNATC 1 cut(s) 55
BseLI CCNNNNNNNGG 5 cut(s) 66, 171, 319, 890, 1325
BseMI GCAATG 1 cut(s) 536
BseMII CTCAG 3 cut(s) 330, 422, 771
BseNI ACTGG 3 cut(s) 176, 1171, 1300
BseRI GAGGAG 2 cut(s) 185, 1046
BseXI GCAGC 5 cut(s) 829, 935, 938, 1201, 1238
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 6 cut(s) 5, 150, 311, 355, 426, 894
BshNI GGYRCC 1 cut(s) 632
BsiHKAI GWGCWC 2 cut(s) 421, 1333
BsiSI CCGG 2 cut(s) 26, 67
BslFI GGGAC 2 cut(s) 527, 812
BslI CCNNNNNNNGG 5 cut(s) 66, 171, 319, 890, 1325
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 2 cut(s) 527, 812
BsnI GGCC 6 cut(s) 5, 150, 311, 355, 426, 894
Bsp1286I GDGCHC 4 cut(s) 421, 1026, 1333, 1351
Bsp143I GATC 3 cut(s) 176, 211, 655
Bsp19I CCATGG 2 cut(s) 253, 378
BspANI GGCC 6 cut(s) 5, 150, 311, 355, 426, 894
BspCNI CTCAG 3 cut(s) 331, 421, 772
BspFNI CGCG 1 cut(s) 189
BspHI TCATGA 2 cut(s) 292, 658
BspLI GGNNCC 5 cut(s) 160, 251, 634, 800, 801
BspMI ACCTGC 1 cut(s) 1060
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 632
BsrDI GCAATG 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 3 cut(s) 176, 1171, 1300
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 4 cut(s) 145, 253, 378, 1026
BssMI GATC 3 cut(s) 176, 211, 655
BssSI CACGAG 1 cut(s) 420
BssT1I CCWWGG 3 cut(s) 253, 378, 1026
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 3 cut(s) 483, 1320, 1326
Bst4CI ACNGT 5 cut(s) 506, 559, 788, 794, 1412
Bst6I CTCTTC 1 cut(s) 1001
BstC8I GCNNGC 2 cut(s) 777, 1224
BstDEI CTNAG 5 cut(s) 339, 408, 444, 780, 1343
BstDSI CCRYGG 3 cut(s) 145, 253, 378
BstENI CCTNNNNNAGG 1 cut(s) 1323
BstF5I GGATG 8 cut(s) 56, 227, 742, 976, 1201, 1240, 1371, 1393
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 3 cut(s) 179, 214, 658
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 3 cut(s) 176, 211, 655
BstMWI GCNNNNNNNGC 9 cut(s) 156, 457, 945, 992, 995, 1223, 1282, 1337, 1346
BstNI CCWGG 3 cut(s) 483, 1320, 1326
BstNSI RCATGY 1 cut(s) 1076
BstSCI CCNGG 4 cut(s) 25, 481, 1318, 1324
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 5 cut(s) 829, 935, 938, 1201, 1238
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 222
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 6 cut(s) 5, 150, 311, 355, 426, 894
BtgI CCRYGG 3 cut(s) 145, 253, 378
BtsCI GGATG 8 cut(s) 56, 227, 742, 976, 1201, 1240, 1371, 1393
BtsIMutI CAGTG 2 cut(s) 793, 1164
BveI ACCTGC 1 cut(s) 1060
Cac8I GCNNGC 2 cut(s) 777, 1224
CaiI CAGNNNCTG 1 cut(s) 171
CciI TCATGA 2 cut(s) 292, 658
CfoI GCGC 1 cut(s) 191
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 5 cut(s) 310, 354, 799, 1049, 1322
Csp6I GTAC 2 cut(s) 140, 1413
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviQI GTAC 2 cut(s) 140, 1413
DdeI CTNAG 5 cut(s) 339, 408, 444, 780, 1343
DpnI GATC 3 cut(s) 178, 213, 657
DpnII GATC 3 cut(s) 176, 211, 655
DrdI GACNNNNNNGTC 1 cut(s) 1135
DriI GACNNNNNGTC 2 cut(s) 1055, 1320
DseDI GACNNNNNNGTC 1 cut(s) 1135
EaeI YGGCCR 2 cut(s) 3, 424
Eam1104I CTCTTC 1 cut(s) 1001
Eam1105I GACNNNNNGTC 2 cut(s) 1055, 1320
EarI CTCTTC 1 cut(s) 1001
EciI GGCGGA 2 cut(s) 151, 956
Eco130I CCWWGG 3 cut(s) 253, 378, 1026
Eco24I GRGCYC 2 cut(s) 1026, 1351
Eco47I GGWCC 3 cut(s) 799, 1049, 1322
EcoNI CCTNNNNNAGG 1 cut(s) 1323
EcoO109I RGGNCCY 1 cut(s) 799
EcoRI GAATTC 1 cut(s) 953
EcoRII CCWGG 3 cut(s) 481, 1318, 1324
EcoT14I CCWWGG 3 cut(s) 253, 378, 1026
EcoT38I GRGCYC 2 cut(s) 1026, 1351
ErhI CCWWGG 3 cut(s) 253, 378, 1026
FaqI GGGAC 2 cut(s) 527, 812
FauI CCCGC 1 cut(s) 194
FauNDI CATATG 2 cut(s) 588, 1210
FblI GTMKAC 1 cut(s) 547
FokI GGATG 8 cut(s) 43, 234, 729, 963, 1208, 1247, 1378, 1400
FriOI GRGCYC 2 cut(s) 1026, 1351
FspBI CTAG 2 cut(s) 83, 834
GlaI GCGC 1 cut(s) 190
GsuI CTGGAG 2 cut(s) 193, 1317
HaeIII GGCC 6 cut(s) 5, 150, 311, 355, 426, 894
HapII CCGG 2 cut(s) 26, 67
HhaI GCGC 1 cut(s) 191
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 1283
HinfI GANTC 5 cut(s) 51, 473, 811, 1199, 1315
HpaII CCGG 2 cut(s) 26, 67
HphI GGTGA 3 cut(s) 26, 446, 1197
Hpy166II GTNNAC 2 cut(s) 493, 548
Hpy188III TCNNGA 8 cut(s) 43, 219, 293, 567, 643, 659, 680, 839
Hpy8I GTNNAC 2 cut(s) 493, 548
HpyCH4III ACNGT 5 cut(s) 506, 559, 788, 794, 1412
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 6 cut(s) 76, 541, 939, 1226, 1251, 1276
HpyF10VI GCNNNNNNNGC 9 cut(s) 156, 457, 945, 992, 995, 1223, 1282, 1337, 1346
HpyF3I CTNAG 5 cut(s) 339, 408, 444, 780, 1343
HpySE526I ACGT 1 cut(s) 516
HspAI GCGC 1 cut(s) 189
KflI GGGWCCC 1 cut(s) 799
Kzo9I GATC 3 cut(s) 176, 211, 655
LmnI GCTCC 3 cut(s) 164, 739, 1255
Lsp1109I GCAGC 5 cut(s) 829, 935, 938, 1201, 1238
LweI GCATC 2 cut(s) 751, 1170
MaeI CTAG 2 cut(s) 83, 834
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 5 cut(s) 371, 788, 1039, 1126, 1390
MalI GATC 3 cut(s) 178, 213, 657
MboI GATC 3 cut(s) 176, 211, 655
MboII GAAGA 4 cut(s) 104, 544, 872, 1018
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 4 cut(s) 421, 1026, 1333, 1351
MlsI TGGCCA 2 cut(s) 5, 426
MluCI AATT 8 cut(s) 270, 325, 343, 401, 953, 1263, 1371, 1398
MluNI TGGCCA 2 cut(s) 5, 426
MlyI GAGTC 1 cut(s) 1309
MmeI TCCRAC 3 cut(s) 631, 717, 1358
Mox20I TGGCCA 2 cut(s) 5, 426
MscI TGGCCA 2 cut(s) 5, 426
MseI TTAA 3 cut(s) 18, 245, 873
MslI CAYNNNNRTG 5 cut(s) 220, 432, 507, 571, 1124
Msp20I TGGCCA 2 cut(s) 5, 426
MspA1I CMGCKG 2 cut(s) 266, 460
MspI CCGG 2 cut(s) 26, 67
MspR9I CCNGG 4 cut(s) 27, 483, 1320, 1326
MvaI CCWGG 3 cut(s) 483, 1320, 1326
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 9 cut(s) 156, 457, 945, 992, 995, 1223, 1282, 1337, 1346
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 2 cut(s) 253, 378
NdeI CATATG 2 cut(s) 588, 1210
NdeII GATC 3 cut(s) 176, 211, 655
NlaIV GGNNCC 5 cut(s) 160, 251, 634, 800, 801
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 4 cut(s) 371, 788, 1039, 1126
NspI RCATGY 1 cut(s) 1076
OliI CACNNNNGTG 2 cut(s) 432, 571
PagI TCATGA 2 cut(s) 292, 658
PfeI GAWTC 4 cut(s) 51, 473, 811, 1199
PflFI GACNNNGTC 1 cut(s) 667
PflMI CCANNNNNTGG 2 cut(s) 171, 319
PfoI TCCNGGA 1 cut(s) 481
PleI GAGTC 1 cut(s) 1309
PpsI GAGTC 1 cut(s) 1309
PpuMI RGGWCCY 1 cut(s) 799
Psp5II RGGWCCY 1 cut(s) 799
Psp6I CCWGG 3 cut(s) 481, 1318, 1324
PspGI CCWGG 3 cut(s) 481, 1318, 1324
PspN4I GGNNCC 5 cut(s) 160, 251, 634, 800, 801
PspPI GGNCC 5 cut(s) 310, 354, 799, 1049, 1322
PspPPI RGGWCCY 1 cut(s) 799
PstNI CAGNNNCTG 1 cut(s) 171
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 667
PvuII CAGCTG 2 cut(s) 266, 460
RsaI GTAC 2 cut(s) 141, 1414
RsaNI GTAC 2 cut(s) 140, 1413
RseI CAYNNNNRTG 5 cut(s) 220, 432, 507, 571, 1124
SaqAI TTAA 3 cut(s) 18, 245, 873
Sau3AI GATC 3 cut(s) 176, 211, 655
Sau96I GGNCC 5 cut(s) 310, 354, 799, 1049, 1322
ScaI AGTACT 1 cut(s) 1414
SchI GAGTC 1 cut(s) 1309
ScrFI CCNGG 4 cut(s) 27, 483, 1320, 1326
SduI GDGCHC 4 cut(s) 421, 1026, 1333, 1351
SfaNI GCATC 2 cut(s) 751, 1170
SinI GGWCC 3 cut(s) 799, 1049, 1322
SmiMI CAYNNNNRTG 5 cut(s) 220, 432, 507, 571, 1124
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse9I AATT 8 cut(s) 270, 325, 343, 401, 953, 1263, 1371, 1398
SspMI CTAG 2 cut(s) 83, 834
StyD4I CCNGG 4 cut(s) 25, 481, 1318, 1324
StyI CCWWGG 3 cut(s) 253, 378, 1026
TaaI ACNGT 5 cut(s) 506, 559, 788, 794, 1412
TaiI ACGT 1 cut(s) 519
TaqI TCGA 1 cut(s) 1004
TasI AATT 8 cut(s) 270, 325, 343, 401, 953, 1263, 1371, 1398
TatI WGTACW 2 cut(s) 139, 1412
TauI GCSGC 5 cut(s) 311, 989, 992, 995, 998
TfiI GAWTC 4 cut(s) 51, 473, 811, 1199
Tru1I TTAA 3 cut(s) 18, 245, 873
Tru9I TTAA 3 cut(s) 18, 245, 873
TscAI CASTG 2 cut(s) 793, 1171
TseFI GTSAC 4 cut(s) 371, 788, 1039, 1126
TseI GCWGC 5 cut(s) 817, 923, 926, 1214, 1226
Tsp45I GTSAC 4 cut(s) 371, 788, 1039, 1126
TspDTI ATGAA 5 cut(s) 893, 1108, 1112, 1190, 1212
TspGWI ACGGA 1 cut(s) 1049
TspRI CASTG 2 cut(s) 793, 1171
Tth111I GACNNNGTC 1 cut(s) 667
Van91I CCANNNNNTGG 2 cut(s) 171, 319
VpaK11BI GGWCC 3 cut(s) 799, 1049, 1322
XagI CCTNNNNNAGG 1 cut(s) 1323
XapI RAATTY 1 cut(s) 953
XceI RCATGY 1 cut(s) 1076
XcmI CCANNNNNNNNNTGG 2 cut(s) 459, 570
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 2 cut(s) 83, 834
ZrmI AGTACT 1 cut(s) 1414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.