Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013245

Physical Location & Seq

Genomic Coordinates Reverse (-)

19561260 .. 19564350

Gene Structure 3091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGTGAAGGTTTTGGGTTTAGTAGCAATACTGCTTATTGTTTTGGCCGGAAATGTGTTATCTTATGATCGGCAGGGTACTCGGAAAAATTTAGTGATCCATCCGACTAACGAAGATGATCCTACGTTCCCCGATCAGGTGCATATATCTCTGGTTGGGCCGGACAAAATGAGAATATCATGGATAACGCAAAGCTCAATCTCGCCTAGTGTTGTATATGGCACAGTCTCTGGAAAATACGAAGGCTCGGCTAATGGAACGTCGTCATCGTACCACTACTTGTTGATTTACCGATCGGGCCAAATTAATGACGTTGTTATAGGCCCATTAAAGCCCAACACAGTTTACTATTACAAATGTGGAGGCCCAAGTTCAACTCAAGAGTTCAGTTTCAGGACTCCTCCCTCTAAATTCCCAATCAAATTCGCCGTGTCCGGTGACCTTGGTACATCTGAATGGAGTAAATCAACATTGGAACATGTATCAAAATGGGATTATGATGTTTTCATCTTGCCTGGTGATCTGTCATACGCTAACATGTACCAACCACTGTGGGACACTTTTGGTCGCTTGGTGCAGCCACTTGCGAGCCAAAGACCTTGGATGGTCACTCATGGCAACCACGAGCTCGAAAAAATACCTATCTTACACAGTAACCCATTCACCGCCTATAACAAGAGGTGGCGCATGCCATTTGAAGAGAGTGGCTCGAGCTCGAATTTGTACTATTCTTTCAACGTTTATGGAGTCCACATTATAATGTTGGGGTCATACACAGATTTTGAGCCTGGCTCGGAGCAGTACCAATGGTTAGAAAATAATCTCAAGAAAATCGACCGTAAGACCACACCGTGGGTTGTGGCTGTGGTGCATGCGCCTTGGTACAACTCCAACGAAGCTCACCAAGGAGAGAAAGAGAGTGTGGAGATGAAAGAATCCATGGAAACTCTTCTTTACAAAGCTCGTGTCGATTTGGTTTTTGCAGGTCACGTTCATGCTTACGAGCGTTTTAGTCGAGTGTACCAAGATAAGTTCGACAAATGTGGTCCGGTTTATATTAACATCGGAGATGGTGGGAATCTAGAAGGCCTTGCTACCAAGTATAGAGATCCAAATCCCGAAATATCATTGTTTAGAGAAGCAAGTTTCGGGCATGGTCAATTGGTGGTCGAGAATGCGACTCATGCACGTTGGGAATGGCACAGGAACGACGATGATGTGTCGGTTGAAAAGGATTCGGTTTGGTTAACCAGTCTCTTAGCCGATTCATCTTGTAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

427

Amino Acids

48.46

Weight (kDa)

6.02

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	44 - 133	1.5e-19	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	141 - 334	1.6e-20	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	349 - 408	1.8e-19	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52780 AT3G52780
fragaria_vesca	FvH4_6g18430 FvH4_6g18430
malus_domestica	MD12G1023400.v1.1 MD14G1020400.v1.1
prunus_persica	Prupe.7G113100_v2.0.a1
pyrus_communis	pycom12g02180
rosa_chinensis	RchiOBHm_Chr3g0472961
rosa_laevigata	RLG00000024044
rosa_multiflora	Rmu_sc0021557.1_g000005
rosa_roxburghii	Rroxscaffold_6G00408460
rosa_rugosa	Rorug03G0129900
rosa_samantha	Rh3AG182000 Rh3BG208300 Rh3CG205300 Rh3DG167800
rosa_wichuraiana	Rw3G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	758
Acc36I	ACCTGC	1 cut(s)	974
AccB7I	CCANNNNNTGG	1 cut(s)	852
AciI	CCGC	1 cut(s)	666
AclI	AACGTT	1 cut(s)	738
AclWI	GGATC	3 cut(s)	91, 113, 1103
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	4 cut(s)	88, 410, 422, 718
AdeI	CACNNNGTG	1 cut(s)	852
AfaI	GTAC	8 cut(s)	79, 272, 448, 542, 725, 803, 884, 1022
AfiI	CCNNNNNNNGG	2 cut(s)	136, 852
AflIII	ACRYGT	2 cut(s)	478, 537
AgsI	TTSAA	4 cut(s)	375, 698, 736, 1229
AjnI	CCWGG	2 cut(s)	514, 787
AluBI	AGCT	5 cut(s)	195, 628, 714, 899, 962
AluI	AGCT	5 cut(s)	195, 628, 714, 899, 962
Alw21I	GWGCWC	2 cut(s)	630, 716
Alw26I	GTCTC	2 cut(s)	232, 1259
AlwI	GGATC	3 cut(s)	91, 113, 1103
AlwNI	CAGNNNCTG	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	709
AoxI	GGCC	6 cut(s)	45, 158, 298, 322, 364, 1087
ApeKI	GCWGC	1 cut(s)	577
ApoI	RAATTY	4 cut(s)	88, 410, 422, 718
ArsI	GACNNNNNNTTYG	2 cut(s)	951, 983
AseI	ATTAAT	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	948
AspLEI	GCGC	2 cut(s)	687, 877
AspS9I	GGNCC	5 cut(s)	158, 298, 323, 365, 1046
AsuHPI	GGTGA	5 cut(s)	16, 449, 530, 655, 893
AvaI	CYCGRG	1 cut(s)	709
AvaII	GGWCC	1 cut(s)	1046
BanII	GRGCYC	2 cut(s)	630, 716
BauI	CACGAG	2 cut(s)	623, 963
Bbv12I	GWGCWC	2 cut(s)	630, 716
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	3 cut(s)	108, 598, 1064
BceAI	ACGGC	1 cut(s)	413
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	2 cut(s)	516, 789
BcoDI	GTCTC	2 cut(s)	232, 1259
BfaI	CTAG	2 cut(s)	207, 1082
BfuAI	ACCTGC	1 cut(s)	974
BisI	GCNGC	1 cut(s)	578
BlsI	GCNGC	1 cut(s)	579
Bme1390I	CCNGG	2 cut(s)	516, 789
Bme18I	GGWCC	1 cut(s)	1046
BmeT110I	CYCGRG	1 cut(s)	709
BmgT120I	GGNCC	5 cut(s)	158, 298, 323, 365, 1046
BmrFI	CCNGG	2 cut(s)	516, 789
BplI	GAGNNNNNCTC	4 cut(s)	692, 724, 776, 808
BpuEI	CTTGAG	2 cut(s)	363, 809
BsaBI	GATNNNNATC	1 cut(s)	1113
BsaJI	CCNNGG	6 cut(s)	442, 599, 851, 878, 904, 939
BsaWI	WCCGGW	2 cut(s)	434, 1048
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 852
Bse1I	ACTGG	1 cut(s)	1251
Bse8I	GATNNNNATC	1 cut(s)	1113
BseBI	CCWGG	2 cut(s)	516, 789
BseDI	CCNNGG	6 cut(s)	442, 599, 851, 878, 904, 939
BseGI	GGATG	2 cut(s)	100, 609
BseJI	GATNNNNATC	1 cut(s)	1113
BseLI	CCNNNNNNNGG	2 cut(s)	136, 852
BseNI	ACTGG	1 cut(s)	1251
BseRI	GAGGAG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	589
BsgI	GTGCAG	1 cut(s)	596
Bsh1285I	CGRYCG	2 cut(s)	296, 838
BshFI	GGCC	6 cut(s)	47, 160, 300, 324, 366, 1089
BsiEI	CGRYCG	2 cut(s)	296, 838
BsiHKAI	GWGCWC	2 cut(s)	630, 716
BsiHKCI	CYCGRG	1 cut(s)	709
BsiSI	CCGG	4 cut(s)	48, 161, 435, 1049
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	2 cut(s)	136, 852
BsmAI	GTCTC	2 cut(s)	232, 1259
BsmFI	GGGAC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	1180
BsnI	GGCC	6 cut(s)	47, 160, 300, 324, 366, 1089
BsoBI	CYCGRG	1 cut(s)	709
Bsp1286I	GDGCHC	2 cut(s)	630, 716
Bsp143I	GATC	7 cut(s)	67, 96, 118, 133, 293, 520, 1108
Bsp19I	CCATGG	1 cut(s)	939
BspACI	CCGC	1 cut(s)	666
BspANI	GGCC	6 cut(s)	47, 160, 300, 324, 366, 1089
BspMI	ACCTGC	1 cut(s)	974
BspPI	GGATC	3 cut(s)	91, 113, 1103
BsrI	ACTGG	1 cut(s)	1251
BssECI	CCNNGG	6 cut(s)	442, 599, 851, 878, 904, 939
BssMI	GATC	7 cut(s)	67, 96, 118, 133, 293, 520, 1108
BssSI	CACGAG	2 cut(s)	623, 963
BssT1I	CCWWGG	5 cut(s)	442, 599, 878, 904, 939
Bst2BI	CACGAG	2 cut(s)	623, 963
Bst2UI	CCWGG	2 cut(s)	516, 789
Bst4CI	ACNGT	6 cut(s)	226, 343, 552, 653, 839, 852
Bst6I	CTCTTC	2 cut(s)	693, 954
BstC8I	GCNNGC	3 cut(s)	589, 689, 873
BstDEI	CTNAG	1 cut(s)	1258
BstDSI	CCRYGG	2 cut(s)	851, 939
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	100, 609
BstHHI	GCGC	2 cut(s)	687, 877
BstKTI	GATC	7 cut(s)	70, 99, 121, 136, 296, 523, 1111
BstMAI	GTCTC	2 cut(s)	232, 1259
BstMBI	GATC	7 cut(s)	67, 96, 118, 133, 293, 520, 1108
BstMCI	CGRYCG	2 cut(s)	296, 838
BstMWI	GCNNNNNNNGC	1 cut(s)	1184
BstNI	CCWGG	2 cut(s)	516, 789
BstNSI	RCATGY	4 cut(s)	482, 541, 691, 875
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	514, 787
BstV1I	GCAGC	1 cut(s)	589
BstX2I	RGATCY	1 cut(s)	1108
BstYI	RGATCY	1 cut(s)	1108
BsuRI	GGCC	6 cut(s)	47, 160, 300, 324, 366, 1089
BtgI	CCRYGG	2 cut(s)	851, 939
BtsCI	GGATG	2 cut(s)	100, 609
BtsIMutI	CAGTG	1 cut(s)	548
BveI	ACCTGC	1 cut(s)	974
Cac8I	GCNNGC	3 cut(s)	589, 689, 873
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	2 cut(s)	687, 877
Cfr13I	GGNCC	5 cut(s)	158, 298, 323, 365, 1046
Csp6I	GTAC	8 cut(s)	78, 271, 447, 541, 724, 802, 883, 1021
CspCI	CAANNNNNGTGG	2 cut(s)	533, 568
CviQI	GTAC	8 cut(s)	78, 271, 447, 541, 724, 802, 883, 1021
DdeI	CTNAG	1 cut(s)	1258
DpnI	GATC	7 cut(s)	69, 98, 120, 135, 295, 522, 1110
DpnII	GATC	7 cut(s)	67, 96, 118, 133, 293, 520, 1108
DraIII	CACNNNGTG	1 cut(s)	852
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	693, 954
EarI	CTCTTC	2 cut(s)	693, 954
Ecl136II	GAGCTC	2 cut(s)	628, 714
Eco130I	CCWWGG	5 cut(s)	442, 599, 878, 904, 939
Eco147I	AGGCCT	1 cut(s)	1089
Eco24I	GRGCYC	2 cut(s)	630, 716
Eco47I	GGWCC	1 cut(s)	1046
Eco53kI	GAGCTC	2 cut(s)	628, 714
Eco88I	CYCGRG	1 cut(s)	709
Eco91I	GGTNACC	1 cut(s)	437
EcoICRI	GAGCTC	2 cut(s)	628, 714
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	514, 787
EcoT14I	CCWWGG	5 cut(s)	442, 599, 878, 904, 939
EcoT38I	GRGCYC	2 cut(s)	630, 716
ErhI	CCWWGG	5 cut(s)	442, 599, 878, 904, 939
FaqI	GGGAC	1 cut(s)	569
Fnu4HI	GCNGC	1 cut(s)	578
FokI	GGATG	2 cut(s)	87, 616
FriOI	GRGCYC	2 cut(s)	630, 716
Fsp4HI	GCNGC	1 cut(s)	578
FspBI	CTAG	2 cut(s)	207, 1082
GlaI	GCGC	2 cut(s)	686, 876
GluI	GCNGC	1 cut(s)	578
HaeIII	GGCC	6 cut(s)	47, 160, 300, 324, 366, 1089
HapII	CCGG	4 cut(s)	48, 161, 435, 1049
HhaI	GCGC	2 cut(s)	687, 877
Hin6I	GCGC	2 cut(s)	685, 875
HinP1I	GCGC	2 cut(s)	685, 875
HincII	GTYRAC	1 cut(s)	1248
HindII	GTYRAC	1 cut(s)	1248
HinfI	GANTC	7 cut(s)	397, 747, 935, 1078, 1180, 1235, 1265
HpaI	GTTAAC	1 cut(s)	1248
HpaII	CCGG	4 cut(s)	48, 161, 435, 1049
HphI	GGTGA	5 cut(s)	16, 449, 530, 655, 893
Hpy166II	GTNNAC	4 cut(s)	346, 751, 1021, 1248
Hpy188I	TCNGA	5 cut(s)	84, 105, 454, 796, 1067
Hpy188III	TCNNGA	7 cut(s)	231, 380, 394, 826, 1082, 1118, 1171
Hpy8I	GTNNAC	4 cut(s)	346, 751, 1021, 1248
Hpy99I	CGWCG	2 cut(s)	265, 1214
HpyAV	CCTTC	2 cut(s)	236, 1079
HpyCH4III	ACNGT	6 cut(s)	226, 343, 552, 653, 839, 852
HpyCH4IV	ACGT	6 cut(s)	125, 260, 312, 738, 990, 1189
HpyCH4V	TGCA	5 cut(s)	142, 577, 871, 983, 1187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1184
HpyF3I	CTNAG	1 cut(s)	1258
HpySE526I	ACGT	6 cut(s)	125, 260, 312, 738, 990, 1189
HspAI	GCGC	2 cut(s)	685, 875
KspAI	GTTAAC	1 cut(s)	1248
Kzo9I	GATC	7 cut(s)	67, 96, 118, 133, 293, 520, 1108
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	1 cut(s)	589
MaeI	CTAG	2 cut(s)	207, 1082
MaeII	ACGT	6 cut(s)	125, 260, 312, 738, 990, 1189
MaeIII	GTNAC	4 cut(s)	437, 607, 653, 986
MalI	GATC	7 cut(s)	69, 98, 120, 135, 295, 522, 1110
MboI	GATC	7 cut(s)	67, 96, 118, 133, 293, 520, 1108
MboII	GAAGA	3 cut(s)	125, 710, 941
MfeI	CAATTG	1 cut(s)	1160
MflI	RGATCY	1 cut(s)	1108
MhlI	GDGCHC	2 cut(s)	630, 716
MluCI	AATT	6 cut(s)	88, 303, 410, 422, 718, 1160
MlyI	GAGTC	3 cut(s)	391, 756, 1174
MmeI	TCCRAC	2 cut(s)	128, 915
MnlI	CCTC	4 cut(s)	356, 411, 415, 672
MroXI	GAANNNNTTC	1 cut(s)	948
MseI	TTAA	4 cut(s)	306, 329, 1059, 1247
MslI	CAYNNNNRTG	3 cut(s)	454, 758, 993
MspI	CCGG	4 cut(s)	48, 161, 435, 1049
MspR9I	CCNGG	2 cut(s)	516, 789
MunI	CAATTG	1 cut(s)	1160
Mva1269I	GAATGC	1 cut(s)	1180
MvaI	CCWGG	2 cut(s)	516, 789
MwoI	GCNNNNNNNGC	1 cut(s)	1184
NcoI	CCATGG	1 cut(s)	939
NdeII	GATC	7 cut(s)	67, 96, 118, 133, 293, 520, 1108
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	3 cut(s)	437, 607, 986
NspI	RCATGY	4 cut(s)	482, 541, 691, 875
PaeI	GCATGC	2 cut(s)	691, 875
PaeR7I	CTCGAG	1 cut(s)	709
PceI	AGGCCT	1 cut(s)	1089
PciI	ACATGT	2 cut(s)	478, 537
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PctI	GAATGC	1 cut(s)	1180
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	4 cut(s)	935, 1078, 1235, 1265
PflMI	CCANNNNNTGG	1 cut(s)	852
PkrI	GCNGC	1 cut(s)	579
Ple19I	CGATCG	1 cut(s)	296
PleI	GAGTC	3 cut(s)	391, 755, 1174
PpsI	GAGTC	3 cut(s)	391, 755, 1174
PscI	ACATGT	2 cut(s)	478, 537
PshBI	ATTAAT	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	758
Psp124BI	GAGCTC	2 cut(s)	630, 716
Psp1406I	AACGTT	1 cut(s)	738
Psp6I	CCWGG	2 cut(s)	514, 787
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	2 cut(s)	514, 787
PspPI	GGNCC	5 cut(s)	158, 298, 323, 365, 1046
PspXI	VCTCGAGB	1 cut(s)	709
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	1108
PvuI	CGATCG	1 cut(s)	296
RsaI	GTAC	8 cut(s)	79, 272, 448, 542, 725, 803, 884, 1022
RsaNI	GTAC	8 cut(s)	78, 271, 447, 541, 724, 802, 883, 1021
RseI	CAYNNNNRTG	3 cut(s)	454, 758, 993
SacI	GAGCTC	2 cut(s)	630, 716
SaqAI	TTAA	4 cut(s)	306, 329, 1059, 1247
SatI	GCNGC	1 cut(s)	578
Sau3AI	GATC	7 cut(s)	67, 96, 118, 133, 293, 520, 1108
Sau96I	GGNCC	5 cut(s)	158, 298, 323, 365, 1046
SchI	GAGTC	3 cut(s)	391, 756, 1174
ScrFI	CCNGG	2 cut(s)	516, 789
SduI	GDGCHC	2 cut(s)	630, 716
Sfr274I	CTCGAG	1 cut(s)	709
SinI	GGWCC	1 cut(s)	1046
SlaI	CTCGAG	1 cut(s)	709
SmiMI	CAYNNNNRTG	3 cut(s)	454, 758, 993
SmlI	CTYRAG	3 cut(s)	378, 709, 824
SmoI	CTYRAG	3 cut(s)	378, 709, 824
SphI	GCATGC	2 cut(s)	691, 875
Sse9I	AATT	6 cut(s)	88, 303, 410, 422, 718, 1160
SseBI	AGGCCT	1 cut(s)	1089
SsiI	CCGC	1 cut(s)	666
SspMI	CTAG	2 cut(s)	207, 1082
SstI	GAGCTC	2 cut(s)	630, 716
StuI	AGGCCT	1 cut(s)	1089
StyD4I	CCNGG	2 cut(s)	514, 787
StyI	CCWWGG	5 cut(s)	442, 599, 878, 904, 939
TaaI	ACNGT	6 cut(s)	226, 343, 552, 653, 839, 852
TaiI	ACGT	6 cut(s)	128, 263, 315, 741, 993, 1192
TaqI	TCGA	8 cut(s)	630, 710, 716, 834, 969, 1015, 1035, 1170
TasI	AATT	6 cut(s)	88, 303, 410, 422, 718, 1160
TatI	WGTACW	1 cut(s)	723
TfiI	GAWTC	4 cut(s)	935, 1078, 1235, 1265
Tru1I	TTAA	4 cut(s)	306, 329, 1059, 1247
Tru9I	TTAA	4 cut(s)	306, 329, 1059, 1247
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	3 cut(s)	437, 607, 986
TseI	GCWGC	1 cut(s)	577
Tsp45I	GTSAC	3 cut(s)	437, 607, 986
TspDTI	ATGAA	4 cut(s)	496, 944, 983, 1257
TspRI	CASTG	1 cut(s)	555
Van91I	CCANNNNNTGG	1 cut(s)	852
VpaK11BI	GGWCC	1 cut(s)	1046
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	4 cut(s)	88, 410, 422, 718
XbaI	TCTAGA	1 cut(s)	1081
XceI	RCATGY	4 cut(s)	482, 541, 691, 875
XhoI	CTCGAG	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	948
XspI	CTAG	2 cut(s)	207, 1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.