Rorug03G0129900

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
10524271 .. 10524651
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0129900.1

Sequence Viewer

Length: 381 bp
ATGGCTCAGTTTCTTCTCCTTTGCTTCATCTTAGCAAGTGCTTGTGTGAGTTTAACAATGGCTTCGGCTCCAAGTCCGTACAGTGCACAAGCACCTATGATTAGGAAAATGGGCAAGCACCAGAATGCACCAGCTTTAAGCCCAAGCAATGAGCAATCTCCAAAAGAAGCAGAAGCACCAGAGAGCGGAGACAGTGTGAGTATACTAGAGCAGCAGATCCACCTCAAGAAGCACCACCATGCGGACAGGTCAGTCGCCGGAGGCGGTGTGATTCTCGGAGGGCTTGCCACCACTTTCTTGGTGGCAGTTTTCTGTTACATAAGAGCCACTGCTGCAAGACATAAAAAGCCAGAGATTGGTAGTCCCCAAGTTATTAGCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

126

Amino Acids

13.32

Weight (kDa)

8.91

Isoelectric Point (pI)

70.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52780 AT3G52780
fragaria_vesca FvH4_6g18430 FvH4_6g18430
malus_domestica MD12G1023400.v1.1 MD14G1020400.v1.1
prunus_persica Prupe.7G113100_v2.0.a1
pyrus_communis pycom12g02180
rosa_chinensis RchiOBHm_Chr3g0472961
rosa_laevigata RLG00000024044
rosa_multiflora Rmu_sc0021557.1_g000005
rosa_roxburghii Rroxscaffold_6G00408460
rosa_rugosa Rorug03G0129900
rosa_samantha Rh3AG182000 Rh3BG208300 Rh3CG205300 Rh3DG167800
rosa_wichuraiana Rw3G016150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 202
AciI CCGC 3 cut(s) 186, 242, 264
AclWI GGATC 1 cut(s) 211
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 3 cut(s) 185, 241, 356
AluBI AGCT 2 cut(s) 134, 378
AluI AGCT 2 cut(s) 134, 378
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 84
AlwI GGATC 1 cut(s) 211
ApaLI GTGCAC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 211, 332
BaeGI GKGCMC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 223, 319
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 2 cut(s) 206, 379
BisI GCNGC 2 cut(s) 212, 333
BlsI GCNGC 2 cut(s) 213, 334
BmiI GGNNCC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 209
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 241, 356
Bse3DI GCAATG 1 cut(s) 154
BseLI CCNNNNNNNGG 3 cut(s) 185, 241, 356
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 2 cut(s) 223, 319
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 3 cut(s) 185, 241, 356
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 348
BsmI GAATGC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 3 cut(s) 186, 242, 264
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 211
BsrBI CCGCTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 154
BssMI GATC 1 cut(s) 216
BssNAI GTATAC 1 cut(s) 203
Bst1107I GTATAC 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 83, 194
BstC8I GCNNGC 2 cut(s) 116, 285
BstDEI CTNAG 2 cut(s) 6, 31
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 223, 319
BstX2I RGATCY 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 1 cut(s) 216
BstZ17I GTATAC 1 cut(s) 203
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 3 cut(s) 88, 199, 327
Cac8I GCNNGC 2 cut(s) 116, 285
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 239
CviJI RGCY 9 cut(s) 5, 62, 68, 134, 141, 283, 326, 349, 378
CviKI_1 RGCY 9 cut(s) 5, 62, 68, 134, 141, 283, 326, 349, 378
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 6, 31
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
FaeI CATG 1 cut(s) 242
FaiI YATR 5 cut(s) 98, 203, 240, 320, 342
FaqI GGGAC 1 cut(s) 348
FatI CATG 1 cut(s) 238
FblI GTMKAC 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 212, 333
Fsp4HI GCNGC 2 cut(s) 212, 333
FspBI CTAG 2 cut(s) 206, 379
GluI GCNGC 2 cut(s) 212, 333
HapII CCGG 1 cut(s) 258
Hin1II CATG 1 cut(s) 242
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 86, 203
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 2 cut(s) 86, 203
HpyCH4III ACNGT 2 cut(s) 83, 194
HpyCH4V TGCA 3 cut(s) 86, 128, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 2 cut(s) 6, 31
Hsp92II CATG 1 cut(s) 242
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 6 cut(s) 134, 144, 192, 232, 271, 363
Lsp1109I GCAGC 2 cut(s) 223, 319
MaeI CTAG 2 cut(s) 206, 379
MaeIII GTNAC 1 cut(s) 314
MalI GATC 1 cut(s) 218
MbiI CCGCTC 1 cut(s) 186
MboI GATC 1 cut(s) 216
MboII GAAGA 1 cut(s) 5
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 88
MnlI CCTC 3 cut(s) 233, 254, 272
MseI TTAA 2 cut(s) 53, 137
MslI CAYNNNNRTG 2 cut(s) 123, 237
MspI CCGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeII GATC 1 cut(s) 216
NlaIII CATG 1 cut(s) 242
NlaIV GGNNCC 1 cut(s) 69
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 2 cut(s) 213, 334
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 2 cut(s) 123, 237
SaqAI TTAA 2 cut(s) 53, 137
SatI GCNGC 2 cut(s) 212, 333
Sau3AI GATC 1 cut(s) 216
SduI GDGCHC 1 cut(s) 88
SetI ASST 5 cut(s) 97, 136, 225, 251, 380
SmiMI CAYNNNNRTG 2 cut(s) 123, 237
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SsiI CCGC 3 cut(s) 186, 242, 264
SspMI CTAG 2 cut(s) 206, 379
TaaI ACNGT 2 cut(s) 83, 194
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 53, 137
Tru9I TTAA 2 cut(s) 53, 137
TscAI CASTG 3 cut(s) 88, 199, 334
TseI GCWGC 2 cut(s) 211, 332
TspDTI ATGAA 1 cut(s) 16
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 3 cut(s) 88, 199, 334
Van91I CCANNNNNTGG 1 cut(s) 356
VneI GTGCAC 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 2 cut(s) 295, 298
XmiI GTMKAC 1 cut(s) 202
XspI CTAG 2 cut(s) 206, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.