Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013245

Physical Location & Seq

Genomic Coordinates Forward (+)

1893141 .. 1896840

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGCGATCAAACGCCGGCCGGGACTGGTTCTCGCTGTTTTTACGTTAATGGGCTTGGCCTTCCCGGTGTCGTTTGGTGCATTTGTTCAAGGGTACAATCGTCCACCGGCTCGCAAGGACCTCTATATCCCTGCGGATGATCCTGGTTCTGCTTCTCCACAACAGGTGCATATTTCTGTAGTCGGTGAGGACAAAATGAGGGTGACATGGATCACCGACAGCCCTAGTCTGGCAACAGTGGTATATGGAACATCTACAGGTGTCTATGAAAGCTCTGCAACTGGAAATACAAATTCCTACACGTATCTTATGTACACATCTGGGGATATTCACGACGTCGTTATCGGTCCGTTGAAACCCAACACGACGTACTACTACCGCTGTGGATCCTCTGATTCGGATCCTGAGTTCAGTTTTAAAACCCCGCCTGCTGCATTCCCTATCACATTTGCAATCGTAGGTGATCTTGGACAAACTGAATGGACCTCCTCAACCCTCGAACACATAGACAAAGTAAACCACGACATGTTCTTACTACCAGGTGACTTATCCTATGCAGACGTCATCCAAAATAAATGGGACTCATTTGGCCGTGTGGTACAGCCACTGGCAAGCAAACGGCCTTGGATGGTTACACAAGGCAATCACGAGATCGAAAAGATCCCAATCGTCCACCCTCATGCCTTCACCGCATACAATGCACGGTGGCACATGCCATACGAAGAGAGTGGATCGGACTCAAACCTCTACTACTCATTCAATGTAGCCGGAGTTCATGTGATCATGTTGGGGTCGTACACTGATTTTGATCCTAGTTCTGCACAGTACCAGTGGTTGCAAGCCGATTTGGGAAAGGTTGACAGGGGGAGGACGCCGTGGATCGTCGTGCTTATCCATGCTCCTTGGTACAATTCTAATAAAGCTCATCAGGGTGAGTCTGAATCTGTTGACATGAAGGATGCCATGGAAGATTTGCTCTATCAAGCTTGTGTTGATGTGGTTTATGCAGGGCACGTACATGCCTACGAGCGTTTTACTCGCGTTTACAAGGATCAATCCAATAATTGTGGTCCAGTGCATATTACCATTGGAGATGGTGGCAACCGTGAAGGCCTTGCTAGCAAGTACTTGAATCCGCAACCCAAAATATCGGTTTTCAGGGAGGCAAGCTTTGGGCACGGGCAATTGGTTGTAGTGAATGCAACCCATGCACGGTGGACATGGCATCGGAATGAAGATAGTGAGACAATAGCAAGTGACTCCATTTGGCTCACAAGCCTCTCGTCTGATCCTGCCTGCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

436

Amino Acids

48.44

Weight (kDa)

5.75

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	53 - 141	7e-22	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	149 - 342	1.7e-17	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	357 - 416	4.4e-21	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52780 AT3G52780
fragaria_vesca	FvH4_6g18430 FvH4_6g18430
malus_domestica	MD12G1023400.v1.1 MD14G1020400.v1.1
prunus_persica	Prupe.7G113100_v2.0.a1
pyrus_communis	pycom12g02180
rosa_chinensis	RchiOBHm_Chr3g0472961
rosa_laevigata	RLG00000024044
rosa_multiflora	Rmu_sc0021557.1_g000005
rosa_roxburghii	Rroxscaffold_6G00408460
rosa_rugosa	Rorug03G0129900
rosa_samantha	Rh3AG182000 Rh3BG208300 Rh3CG205300 Rh3DG167800
rosa_wichuraiana	Rw3G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	339, 564
AccII	CGCG	1 cut(s)	1041
AciI	CCGC	5 cut(s)	134, 379, 425, 690, 1136
AcoI	YGGCCR	2 cut(s)	17, 589
AcsI	RAATTY	1 cut(s)	292
AcyI	GRCGYC	3 cut(s)	336, 561, 872
AfaI	GTAC	9 cut(s)	95, 314, 371, 600, 797, 827, 908, 1017, 1127
AfiI	CCNNNNNNNGG	2 cut(s)	229, 1212
AflIII	ACRYGT	2 cut(s)	300, 525
AgsI	TTSAA	4 cut(s)	89, 355, 760, 1132
AjnI	CCWGG	2 cut(s)	142, 538
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	4 cut(s)	273, 923, 986, 1170
AluI	AGCT	4 cut(s)	273, 923, 986, 1170
Alw26I	GTCTC	1 cut(s)	1238
AlwNI	CAGNNNCTG	1 cut(s)	607
AoxI	GGCC	5 cut(s)	17, 57, 589, 620, 1111
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	292
AspS9I	GGNCC	4 cut(s)	118, 347, 483, 1070
AsuC2I	CCSGG	2 cut(s)	21, 65
AsuHPI	GGTGA	7 cut(s)	197, 205, 214, 473, 554, 679, 944
AsuNHI	GCTAGC	1 cut(s)	1118
AvaII	GGWCC	4 cut(s)	118, 347, 483, 1070
BaeGI	GKGCMC	2 cut(s)	1014, 1179
BaeI	ACNNNNGTAYC	2 cut(s)	85, 118
BamHI	GGATCC	2 cut(s)	386, 400
BauI	CACGAG	1 cut(s)	647
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	622, 1088
BceAI	ACGGC	3 cut(s)	576, 635, 859
BciT130I	CCWGG	2 cut(s)	144, 540
BclI	TGATCA	1 cut(s)	780
BcnI	CCSGG	2 cut(s)	21, 65
BcoDI	GTCTC	1 cut(s)	1238
BfaI	CTAG	3 cut(s)	225, 813, 1119
BfmI	CTRYAG	2 cut(s)	177, 255
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
BmcAI	AGTACT	1 cut(s)	1127
Bme1390I	CCNGG	4 cut(s)	21, 65, 144, 540
Bme18I	GGWCC	4 cut(s)	118, 347, 483, 1070
BmgT120I	GGNCC	4 cut(s)	118, 347, 483, 1070
BmiI	GGNNCC	2 cut(s)	388, 402
BmrFI	CCNGG	4 cut(s)	21, 65, 144, 540
BmsI	GCATC	2 cut(s)	949, 1234
BmtI	GCTAGC	1 cut(s)	1122
BpuMI	CCSGG	2 cut(s)	21, 65
BsaAI	YACGTR	2 cut(s)	303, 1015
BsaBI	GATNNNNATC	3 cut(s)	399, 665, 807
BsaHI	GRCGYC	3 cut(s)	336, 561, 872
BsaJI	CCNNGG	4 cut(s)	623, 875, 902, 963
BsaXI	ACNNNNNCTCC	2 cut(s)	762, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 1212
Bse118I	RCCGGY	2 cut(s)	15, 106
Bse1I	ACTGG	5 cut(s)	30, 286, 612, 829, 1073
Bse8I	GATNNNNATC	3 cut(s)	399, 665, 807
BseBI	CCWGG	2 cut(s)	144, 540
BseDI	CCNNGG	4 cut(s)	623, 875, 902, 963
BseGI	GGATG	4 cut(s)	142, 564, 633, 964
BseJI	GATNNNNATC	3 cut(s)	399, 665, 807
BseLI	CCNNNNNNNGG	2 cut(s)	229, 1212
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	5 cut(s)	30, 286, 612, 829, 1073
BseRI	GAGGAG	1 cut(s)	478
BseSI	GKGCMC	2 cut(s)	1014, 1179
BseX3I	CGGCCG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	1041
Bsh1285I	CGRYCG	1 cut(s)	20
BshFI	GGCC	5 cut(s)	19, 59, 591, 622, 1113
BsiEI	CGRYCG	1 cut(s)	20
BsiSI	CCGG	5 cut(s)	16, 20, 65, 107, 768
BslFI	GGGAC	2 cut(s)	36, 593
BslI	CCNNNNNNNGG	2 cut(s)	229, 1212
BsmAI	GTCTC	1 cut(s)	1238
BsmFI	GGGAC	2 cut(s)	36, 593
BsmI	GAATGC	2 cut(s)	434, 1204
BsnI	GGCC	5 cut(s)	19, 59, 591, 622, 1113
Bsp1286I	GDGCHC	2 cut(s)	1014, 1179
Bsp1407I	TGTACA	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	963
BspACI	CCGC	5 cut(s)	134, 379, 425, 690, 1136
BspANI	GGCC	5 cut(s)	19, 59, 591, 622, 1113
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	1041
BspLI	GGNNCC	2 cut(s)	388, 402
BspOI	GCTAGC	1 cut(s)	1122
BsrFI	RCCGGY	2 cut(s)	15, 106
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	5 cut(s)	30, 286, 612, 829, 1073
BssAI	RCCGGY	2 cut(s)	15, 106
BssECI	CCNNGG	4 cut(s)	623, 875, 902, 963
BssNI	GRCGYC	3 cut(s)	336, 561, 872
BssSI	CACGAG	1 cut(s)	647
BssT1I	CCWWGG	3 cut(s)	623, 902, 963
Bst2BI	CACGAG	1 cut(s)	647
Bst2UI	CCWGG	2 cut(s)	144, 540
Bst4CI	ACNGT	5 cut(s)	238, 705, 825, 1106, 1215
Bst6I	CTCTTC	1 cut(s)	717
BstACI	GRCGYC	3 cut(s)	336, 561, 872
BstAPI	GCANNNNNTGC	2 cut(s)	698, 1208
BstAUI	TGTACA	1 cut(s)	312
BstBAI	YACGTR	2 cut(s)	303, 1015
BstC8I	GCNNGC	8 cut(s)	17, 112, 429, 613, 840, 1120, 1168, 1297
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	2 cut(s)	875, 963
BstF5I	GGATG	4 cut(s)	142, 564, 633, 964
BstFNI	CGCG	1 cut(s)	1041
BstMAI	GTCTC	1 cut(s)	1238
BstMCI	CGRYCG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	4 cut(s)	689, 698, 1119, 1208
BstNI	CCWGG	2 cut(s)	144, 540
BstNSI	RCATGY	3 cut(s)	529, 715, 1022
BstSCI	CCNGG	4 cut(s)	19, 63, 142, 538
BstSFI	CTRYAG	2 cut(s)	177, 255
BstSLI	GKGCMC	2 cut(s)	1014, 1179
BstUI	CGCG	1 cut(s)	1041
BstV1I	GCAGC	1 cut(s)	418
BstX2I	RGATCY	3 cut(s)	386, 400, 660
BstYI	RGATCY	3 cut(s)	386, 400, 660
BstZI	CGGCCG	1 cut(s)	17
BsuRI	GGCC	5 cut(s)	19, 59, 591, 622, 1113
BtgI	CCRYGG	2 cut(s)	875, 963
BtsCI	GGATG	4 cut(s)	142, 564, 633, 964
BtsIMutI	CAGTG	5 cut(s)	243, 605, 798, 836, 1080
Cac8I	GCNNGC	8 cut(s)	17, 112, 429, 613, 840, 1120, 1168, 1297
CaiI	CAGNNNCTG	1 cut(s)	607
Cfr10I	RCCGGY	2 cut(s)	15, 106
Cfr13I	GGNCC	4 cut(s)	118, 347, 483, 1070
CpoI	CGGWCCG	1 cut(s)	347
CseI	GACGC	1 cut(s)	880
CsiI	ACCWGGT	1 cut(s)	538
Csp6I	GTAC	9 cut(s)	94, 313, 370, 599, 796, 826, 907, 1016, 1126
CspCI	CAANNNNNGTGG	2 cut(s)	1048, 1083
CspI	CGGWCCG	1 cut(s)	347
CviQI	GTAC	9 cut(s)	94, 313, 370, 599, 796, 826, 907, 1016, 1126
DdeI	CTNAG	1 cut(s)	405
DraI	TTTAAA	1 cut(s)	418
EaeI	YGGCCR	2 cut(s)	17, 589
EagI	CGGCCG	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
EclXI	CGGCCG	1 cut(s)	17
Eco130I	CCWWGG	3 cut(s)	623, 902, 963
Eco147I	AGGCCT	1 cut(s)	1113
Eco47I	GGWCC	4 cut(s)	118, 347, 483, 1070
Eco52I	CGGCCG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	142, 538
EcoT14I	CCWWGG	3 cut(s)	623, 902, 963
ErhI	CCWWGG	3 cut(s)	623, 902, 963
FaqI	GGGAC	2 cut(s)	36, 593
FauI	CCCGC	1 cut(s)	432
FbaI	TGATCA	1 cut(s)	780
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	4 cut(s)	149, 551, 640, 971
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	3 cut(s)	225, 813, 1119
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	5 cut(s)	19, 59, 591, 622, 1113
HapII	CCGG	5 cut(s)	16, 20, 65, 107, 768
HgaI	GACGC	1 cut(s)	880
Hin1I	GRCGYC	3 cut(s)	336, 561, 872
HincII	GTYRAC	2 cut(s)	859, 949
HindII	GTYRAC	2 cut(s)	859, 949
HindIII	AAGCTT	2 cut(s)	984, 1168
HinfI	GANTC	7 cut(s)	395, 581, 737, 935, 941, 1132, 1259
HpaII	CCGG	5 cut(s)	16, 20, 65, 107, 768
HphI	GGTGA	7 cut(s)	197, 205, 214, 473, 554, 679, 944
Hpy166II	GTNNAC	9 cut(s)	104, 315, 517, 673, 798, 859, 949, 1045, 1218
Hpy188I	TCNGA	6 cut(s)	394, 400, 736, 940, 1230, 1288
Hpy188III	TCNNGA	3 cut(s)	332, 404, 647
Hpy8I	GTNNAC	9 cut(s)	104, 315, 517, 673, 798, 859, 949, 1045, 1218
Hpy99I	CGWCG	4 cut(s)	338, 341, 370, 887
HpyAV	CCTTC	4 cut(s)	70, 694, 949, 1103
HpyCH4III	ACNGT	5 cut(s)	238, 705, 825, 1106, 1215
HpyCH4IV	ACGT	6 cut(s)	44, 302, 336, 368, 561, 1014
HpyF10VI	GCNNNNNNNGC	4 cut(s)	689, 698, 1119, 1208
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	6 cut(s)	44, 302, 336, 368, 561, 1014
Hsp92I	GRCGYC	3 cut(s)	336, 561, 872
KroI	GCCGGC	1 cut(s)	15
KroNI	GCCGGC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	780
LmnI	GCTCC	1 cut(s)	904
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	2 cut(s)	949, 1234
MabI	ACCWGGT	1 cut(s)	538
MaeI	CTAG	3 cut(s)	225, 813, 1119
MaeII	ACGT	6 cut(s)	44, 302, 336, 368, 561, 1014
MaeIII	GTNAC	4 cut(s)	202, 542, 631, 1256
MboII	GAAGA	3 cut(s)	734, 980, 1247
MfeI	CAATTG	1 cut(s)	1184
MflI	RGATCY	3 cut(s)	386, 400, 660
MhlI	GDGCHC	2 cut(s)	1014, 1179
MluCI	AATT	4 cut(s)	292, 910, 1063, 1184
MlyI	GAGTC	4 cut(s)	575, 731, 944, 1253
MroNI	GCCGGC	1 cut(s)	15
MseI	TTAA	2 cut(s)	47, 417
MslI	CAYNNNNRTG	4 cut(s)	678, 930, 1017, 1230
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	5 cut(s)	16, 20, 65, 107, 768
MspR9I	CCNGG	4 cut(s)	21, 65, 144, 540
MunI	CAATTG	1 cut(s)	1184
Mva1269I	GAATGC	2 cut(s)	434, 1204
MvaI	CCWGG	2 cut(s)	144, 540
MvnI	CGCG	1 cut(s)	1041
MwoI	GCNNNNNNNGC	4 cut(s)	689, 698, 1119, 1208
NaeI	GCCGGC	1 cut(s)	17
NciI	CCSGG	2 cut(s)	21, 65
NcoI	CCATGG	1 cut(s)	963
NgoMIV	GCCGGC	1 cut(s)	15
NheI	GCTAGC	1 cut(s)	1118
NlaIV	GGNNCC	2 cut(s)	388, 402
NmuCI	GTSAC	3 cut(s)	202, 542, 1256
NspI	RCATGY	3 cut(s)	529, 715, 1022
PceI	AGGCCT	1 cut(s)	1113
PciI	ACATGT	1 cut(s)	525
PctI	GAATGC	2 cut(s)	434, 1204
PdiI	GCCGGC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	395, 941, 1132
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	4 cut(s)	575, 731, 943, 1253
PpsI	GAGTC	4 cut(s)	575, 731, 943, 1253
Ppu21I	YACGTR	2 cut(s)	303, 1015
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	142, 538
PspGI	CCWGG	2 cut(s)	142, 538
PspN4I	GGNNCC	2 cut(s)	388, 402
PspPI	GGNCC	4 cut(s)	118, 347, 483, 1070
PspPPI	RGGWCCY	1 cut(s)	118
PsrI	GAACNNNNNNTAC	2 cut(s)	756, 788
PstNI	CAGNNNCTG	1 cut(s)	607
PsuI	RGATCY	3 cut(s)	386, 400, 660
RsaI	GTAC	9 cut(s)	95, 314, 371, 600, 797, 827, 908, 1017, 1127
RsaNI	GTAC	9 cut(s)	94, 313, 370, 599, 796, 826, 907, 1016, 1126
RseI	CAYNNNNRTG	4 cut(s)	678, 930, 1017, 1230
Rsr2I	CGGWCCG	1 cut(s)	347
RsrII	CGGWCCG	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	47, 417
SatI	GCNGC	1 cut(s)	432
Sau96I	GGNCC	4 cut(s)	118, 347, 483, 1070
ScaI	AGTACT	1 cut(s)	1127
SchI	GAGTC	4 cut(s)	575, 731, 944, 1253
ScrFI	CCNGG	4 cut(s)	21, 65, 144, 540
SduI	GDGCHC	2 cut(s)	1014, 1179
SexAI	ACCWGGT	1 cut(s)	538
SfaNI	GCATC	2 cut(s)	949, 1234
SfcI	CTRYAG	2 cut(s)	177, 255
SinI	GGWCC	4 cut(s)	118, 347, 483, 1070
SmiMI	CAYNNNNRTG	4 cut(s)	678, 930, 1017, 1230
Sse9I	AATT	4 cut(s)	292, 910, 1063, 1184
SseBI	AGGCCT	1 cut(s)	1113
SsiI	CCGC	5 cut(s)	134, 379, 425, 690, 1136
SspMI	CTAG	3 cut(s)	225, 813, 1119
StuI	AGGCCT	1 cut(s)	1113
StyD4I	CCNGG	4 cut(s)	19, 63, 142, 538
StyI	CCWWGG	3 cut(s)	623, 902, 963
TaaI	ACNGT	5 cut(s)	238, 705, 825, 1106, 1215
TaiI	ACGT	6 cut(s)	47, 305, 339, 371, 564, 1017
TaqI	TCGA	2 cut(s)	498, 654
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	4 cut(s)	292, 910, 1063, 1184
TatI	WGTACW	2 cut(s)	312, 1125
TfiI	GAWTC	3 cut(s)	395, 941, 1132
Tru1I	TTAA	2 cut(s)	47, 417
Tru9I	TTAA	2 cut(s)	47, 417
TscAI	CASTG	5 cut(s)	243, 612, 805, 836, 1080
TseFI	GTSAC	3 cut(s)	202, 542, 1256
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	3 cut(s)	202, 542, 1256
TspDTI	ATGAA	4 cut(s)	282, 764, 968, 1248
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	5 cut(s)	243, 612, 805, 836, 1080
VpaK11BI	GGWCC	4 cut(s)	118, 347, 483, 1070
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	3 cut(s)	529, 715, 1022
XspI	CTAG	3 cut(s)	225, 813, 1119
ZraI	GACGTC	2 cut(s)	337, 562
ZrmI	AGTACT	1 cut(s)	1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.