AT3G54660

Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
20229637 .. 20233211
3575 bp
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UTR
Exon/CDS
Intron
AT3G54660.1

Sequence Viewer

Length: 1698 bp
ATGGCTTCGACCCCGAAGCTTACCAGTACAATTTCATCATCTTCTCCATCTCTTCAATTCCTCTGCAAAAAACTCCCAATCGCAATTCATCTACCATCATCTTCTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTATTCTCTCCGTCCCCGTATCGCCCTACTCTCAAACCACCGCTATTACCACTCTCGCCGGTTTTCTGTTTGTGCCAGTACCGATAATGGAGCTGAATCAGACCGCCACTACGATTTTGATCTCTTCACTATCGGTGCCGGAAGCGGCGGCGTCCGCGCCTCTCGCTTCGCCACTAGCTTCGGTGCATCCGCCGCCGTTTGCGAGCTTCCTTTTTCCACTATCTCTTCCGATACTGCTGGAGGCGTTGGAGGAACGTGTGTATTGAGAGGATGTGTACCAAAGAAGTTACTTGTGTATGCATCCAAATACAGTCATGAGTTTGAAGACAGTCATGGATTTGGTTGGAAGTATGAGACTGAGCCTTCTCATGATTGGACTACTTTGATTGCTAACAAGAATGCTGAGTTACAGCGGTTGACTGGTATTTATAAGAATATACTGAGCAAAGCTAATGTCAAGTTGATTGAAGGTCGTGGAAAGGTTATAGACCCACACACTGTTGATGTAGATGGGAAAATCTATACTACGAGGAATATTCTGATTGCAGTTGGTGGACGTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGATGCCGCGCTTGATTTGCCTTCCAAGCCTAAGAAAATTGCAATAGTTGGTGGTGGCTACATAGCCCTGGAGTTTGCGGGGATCTTCAATGGTCTTAACTGTGAAGTTCATGTATTTATAAGGCAAAAGAAGGTGCTGAGGGGATTTGATGAAGATGTCAGGGATTTCGTTGGAGAGCAGATGTCTTTAAGAGGTATTGAGTTTCACACTGAAGAATCCCCTGAAGCCATCATCAAAGCTGGAGATGGCTCGTTCTCTCTGAAGACCAGCAAGGGAACTGTTGAGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAGGTTGACGAATATTCACAGACATCTGTTCCATCCATCTGGGCTGTTGGGGATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGAGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGGCCATAGAACAATATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCATTAAAGGCTACCCTTTCAGGACTTCCAGACCGAGTATTTATGAAACTCATTGTCTGTGCAAACACCAATAAAGTTCTCGGTGTTCACATGTGTGGAGAAGATTCACCAGAAATCATCCAGGGATTTGGGGTTGCAGTTAAAGCTGGTTTAACTAAGGCCGACTTTGATGCTACAGTGGGTGTTCACCCCACAGCAGCTGAGGAGTTTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAG

Protein Analysis

565

Amino Acids

60.85

Weight (kDa)

7.97

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 89 - 411 2.1e-67 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 212 - 395 8.7e-10 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 262 - 339 5.8e-22 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim PF02852 431 - 539 5.5e-35 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 576, 869
AatII GACGTC 1 cut(s) 706
AccB1I GGYRCC 1 cut(s) 281
AccB7I CCANNNNNTGG 1 cut(s) 1322
AccII CGCG 2 cut(s) 303, 758
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 1 cut(s) 1634
AcuI CTGAAG 5 cut(s) 981, 993, 1031, 1362, 1692
AcyI GRCGYC 2 cut(s) 297, 703
AfaI GTAC 3 cut(s) 28, 226, 423
AfiI CCNNNNNNNGG 1 cut(s) 1322
AflIII ACRYGT 2 cut(s) 401, 1488
AgsI TTSAA 5 cut(s) 56, 470, 614, 838, 1259
AjnI CCWGG 4 cut(s) 724, 816, 1518, 1628
AjuI GAANNNNNNNTTGG 2 cut(s) 1076, 1108
AleI CACNNNNGTG 1 cut(s) 1491
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 1 cut(s) 839
AlwNI CAGNNNCTG 2 cut(s) 1598, 1688
AoxI GGCC 3 cut(s) 1350, 1397, 1557
ApeKI GCWGC 2 cut(s) 1595, 1685
ApoI RAATTY 1 cut(s) 1634
ArsI GACNNNNNNTTYG 2 cut(s) 585, 617
AspLEI GCGC 3 cut(s) 305, 760, 1301
AsuHPI GGTGA 3 cut(s) 1379, 1497, 1577
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 1624
BbsI GAAGAC 2 cut(s) 477, 1019
BbvCI CCTCAGC 2 cut(s) 887, 1599
BbvI GCAGC 2 cut(s) 1607, 1672
BccI CCATC 8 cut(s) 55, 103, 650, 986, 989, 1174, 1178, 1219
BceAI ACGGC 2 cut(s) 326, 1286
BcgI CGANNNNNNTGC 2 cut(s) 1550, 1584
BciT130I CCWGG 4 cut(s) 726, 818, 1520, 1630
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 2 cut(s) 111, 321
BfmI CTRYAG 1 cut(s) 1572
BisI GCNGC 6 cut(s) 292, 295, 339, 756, 1596, 1686
BlsI GCNGC 6 cut(s) 293, 296, 340, 757, 1597, 1687
Bme1390I CCNGG 4 cut(s) 726, 818, 1520, 1630
BmiI GGNNCC 2 cut(s) 283, 1623
BmrFI CCNGG 4 cut(s) 726, 818, 1520, 1630
BmsI GCATC 4 cut(s) 341, 455, 742, 1558
BpiI GAAGAC 2 cut(s) 477, 1019
BpmI CTGGAG 4 cut(s) 405, 839, 1011, 1197
Bpu10I CCTNAGC 2 cut(s) 887, 1599
BsaBI GATNNNNATC 1 cut(s) 264
BsaHI GRCGYC 2 cut(s) 297, 703
BsaJI CCNNGG 2 cut(s) 816, 1519
Bsc4I CCNNNNNNNGG 1 cut(s) 1322
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 5 cut(s) 24, 222, 571, 1066, 1214
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 4 cut(s) 726, 818, 1520, 1630
BseDI CCNNGG 2 cut(s) 816, 1519
BseGI GGATG 7 cut(s) 332, 422, 446, 1166, 1192, 1381, 1515
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 1322
BseMII CTCAG 6 cut(s) 495, 540, 578, 878, 1590, 1644
BseNI ACTGG 5 cut(s) 24, 222, 571, 1066, 1214
BseRI GAGGAG 2 cut(s) 1616, 1639
BseXI GCAGC 2 cut(s) 1607, 1672
BseYI CCCAGC 2 cut(s) 1311, 1688
Bsh1236I CGCG 2 cut(s) 303, 758
BshFI GGCC 3 cut(s) 1352, 1399, 1559
BshNI GGYRCC 1 cut(s) 281
BsiSI CCGG 2 cut(s) 205, 285
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 1322
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 144
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 3 cut(s) 1352, 1399, 1559
Bsp1286I GDGCHC 1 cut(s) 1624
Bsp143I GATC 2 cut(s) 265, 831
BspANI GGCC 3 cut(s) 1352, 1399, 1559
BspCNI CTCAG 6 cut(s) 496, 541, 579, 879, 1591, 1645
BspFNI CGCG 2 cut(s) 303, 758
BspHI TCATGA 2 cut(s) 460, 514
BspLI GGNNCC 2 cut(s) 283, 1623
BspPI GGATC 1 cut(s) 839
BspQI GCTCTTC 1 cut(s) 1338
BspT107I GGYRCC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 5 cut(s) 24, 222, 571, 1066, 1214
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 816, 1519
BssMI GATC 2 cut(s) 265, 831
BssNI GRCGYC 2 cut(s) 297, 703
Bst2UI CCWGG 4 cut(s) 726, 818, 1520, 1630
Bst4CI ACNGT 7 cut(s) 458, 476, 646, 851, 1030, 1330, 1576
Bst6I CTCTTC 4 cut(s) 57, 275, 376, 1338
BstACI GRCGYC 2 cut(s) 297, 703
BstC8I GCNNGC 3 cut(s) 350, 1070, 1350
BstDEI CTNAG 9 cut(s) 504, 549, 587, 780, 887, 1087, 1554, 1599, 1653
BstF5I GGATG 7 cut(s) 332, 422, 446, 1166, 1192, 1381, 1515
BstFNI CGCG 2 cut(s) 303, 758
BstHHI GCGC 3 cut(s) 305, 760, 1301
BstKTI GATC 2 cut(s) 268, 834
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 2 cut(s) 265, 831
BstMWI GCNNNNNNNGC 8 cut(s) 300, 309, 338, 766, 775, 1273, 1541, 1682
BstNI CCWGG 4 cut(s) 726, 818, 1520, 1630
BstNSI RCATGY 2 cut(s) 1049, 1492
BstSCI CCNGG 4 cut(s) 724, 816, 1518, 1628
BstSFI CTRYAG 1 cut(s) 1572
BstUI CGCG 2 cut(s) 303, 758
BstV1I GCAGC 2 cut(s) 1607, 1672
BstV2I GAAGAC 2 cut(s) 477, 1019
BstX2I RGATCY 1 cut(s) 831
BstXI CCANNNNNNTGG 2 cut(s) 1173, 1526
BstYI RGATCY 1 cut(s) 831
BsuRI GGCC 3 cut(s) 1352, 1399, 1559
BtsCI GGATG 7 cut(s) 332, 422, 446, 1166, 1192, 1381, 1515
BtsIMutI CAGTG 3 cut(s) 642, 957, 1581
Cac8I GCNNGC 3 cut(s) 350, 1070, 1350
CaiI CAGNNNCTG 2 cut(s) 1598, 1688
CciI TCATGA 2 cut(s) 460, 514
CfoI GCGC 3 cut(s) 305, 760, 1301
Cfr10I RCCGGY 1 cut(s) 204
CseI GACGC 1 cut(s) 286
Csp6I GTAC 3 cut(s) 27, 225, 422
CviAII CATG 6 cut(s) 461, 479, 515, 860, 1046, 1489
CviQI GTAC 3 cut(s) 27, 225, 422
DdeI CTNAG 9 cut(s) 504, 549, 587, 780, 887, 1087, 1554, 1599, 1653
DpnI GATC 2 cut(s) 267, 833
DpnII GATC 2 cut(s) 265, 831
Eam1104I CTCTTC 4 cut(s) 57, 275, 376, 1338
EarI CTCTTC 4 cut(s) 57, 275, 376, 1338
EciI GGCGGA 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 1624
Eco57I CTGAAG 5 cut(s) 981, 993, 1031, 1362, 1692
EcoRII CCWGG 4 cut(s) 724, 816, 1518, 1628
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 1624
FaeI CATG 6 cut(s) 464, 482, 518, 863, 1049, 1492
FalI AAGNNNNNCTT 2 cut(s) 1547, 1579
FaqI GGGAC 1 cut(s) 144
FatI CATG 6 cut(s) 460, 478, 514, 859, 1045, 1488
FauI CCCGC 1 cut(s) 820
Fnu4HI GCNGC 6 cut(s) 292, 295, 339, 756, 1596, 1686
FokI GGATG 7 cut(s) 319, 429, 433, 1153, 1199, 1388, 1502
FriOI GRGCYC 1 cut(s) 1624
Fsp4HI GCNGC 6 cut(s) 292, 295, 339, 756, 1596, 1686
FspBI CTAG 2 cut(s) 111, 321
GlaI GCGC 3 cut(s) 304, 759, 1300
GluI GCNGC 6 cut(s) 292, 295, 339, 756, 1596, 1686
GsaI CCCAGC 2 cut(s) 1315, 1692
GsuI CTGGAG 4 cut(s) 405, 839, 1011, 1197
HaeIII GGCC 3 cut(s) 1352, 1399, 1559
HapII CCGG 2 cut(s) 205, 285
HgaI GACGC 1 cut(s) 286
HhaI GCGC 3 cut(s) 305, 760, 1301
Hin1I GRCGYC 2 cut(s) 297, 703
Hin1II CATG 6 cut(s) 464, 482, 518, 863, 1049, 1492
Hin6I GCGC 3 cut(s) 303, 758, 1299
HinP1I GCGC 3 cut(s) 303, 758, 1299
HincII GTYRAC 2 cut(s) 564, 1141
HindII GTYRAC 2 cut(s) 564, 1141
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 7 cut(s) 242, 746, 965, 1200, 1210, 1502, 1646
HpaII CCGG 2 cut(s) 205, 285
HphI GGTGA 3 cut(s) 1379, 1497, 1577
Hpy166II GTNNAC 7 cut(s) 422, 564, 701, 1141, 1381, 1486, 1585
Hpy188I TCNGA 6 cut(s) 247, 376, 687, 751, 1011, 1654
Hpy188III TCNNGA 6 cut(s) 461, 515, 716, 1419, 1427, 1670
Hpy8I GTNNAC 7 cut(s) 422, 564, 701, 1141, 1381, 1486, 1585
HpyAV CCTTC 4 cut(s) 519, 608, 780, 874
HpyCH4III ACNGT 7 cut(s) 458, 476, 646, 851, 1030, 1330, 1576
HpyCH4IV ACGT 2 cut(s) 401, 703
HpyCH4V TGCA 9 cut(s) 66, 332, 446, 692, 791, 1058, 1238, 1460, 1535
HpyF10VI GCNNNNNNNGC 8 cut(s) 300, 309, 338, 766, 775, 1273, 1541, 1682
HpyF3I CTNAG 9 cut(s) 504, 549, 587, 780, 887, 1087, 1554, 1599, 1653
HpySE526I ACGT 2 cut(s) 401, 703
Hsp92I GRCGYC 2 cut(s) 297, 703
Hsp92II CATG 6 cut(s) 464, 482, 518, 863, 1049, 1492
HspAI GCGC 3 cut(s) 303, 758, 1299
Kzo9I GATC 2 cut(s) 265, 831
LguI GCTCTTC 1 cut(s) 1338
LmnI GCTCC 3 cut(s) 236, 1127, 1627
Lsp1109I GCAGC 2 cut(s) 1607, 1672
LweI GCATC 4 cut(s) 341, 455, 742, 1558
MaeI CTAG 2 cut(s) 111, 321
MaeII ACGT 2 cut(s) 401, 703
MaeIII GTNAC 4 cut(s) 432, 552, 1189, 1609
MalI GATC 2 cut(s) 267, 833
MboI GATC 2 cut(s) 265, 831
MflI RGATCY 1 cut(s) 831
MhlI GDGCHC 1 cut(s) 1624
MluCI AATT 6 cut(s) 30, 56, 84, 786, 1204, 1634
MlyI GAGTC 2 cut(s) 1204, 1640
MmeI TCCRAC 5 cut(s) 373, 470, 901, 1074, 1649
Mph1103I ATGCAT 1 cut(s) 448
MseI TTAA 6 cut(s) 846, 938, 1110, 1403, 1539, 1550
MslI CAYNNNNRTG 1 cut(s) 1491
MspA1I CMGCKG 3 cut(s) 559, 1598, 1685
MspI CCGG 2 cut(s) 205, 285
MspR9I CCNGG 4 cut(s) 726, 818, 1520, 1630
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 4 cut(s) 726, 818, 1520, 1630
MvnI CGCG 2 cut(s) 303, 758
MwoI GCNNNNNNNGC 8 cut(s) 300, 309, 338, 766, 775, 1273, 1541, 1682
NdeII GATC 2 cut(s) 265, 831
NlaIII CATG 6 cut(s) 464, 482, 518, 863, 1049, 1492
NlaIV GGNNCC 2 cut(s) 283, 1623
NmuCI GTSAC 1 cut(s) 1609
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 2 cut(s) 1049, 1492
OliI CACNNNNGTG 1 cut(s) 1491
PagI TCATGA 2 cut(s) 460, 514
PciI ACATGT 1 cut(s) 1488
PciSI GCTCTTC 1 cut(s) 1338
PctI GAATGC 1 cut(s) 550
PfeI GAWTC 5 cut(s) 242, 746, 965, 1200, 1502
PflMI CCANNNNNTGG 1 cut(s) 1322
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 6 cut(s) 293, 296, 340, 757, 1597, 1687
PleI GAGTC 2 cut(s) 1204, 1640
PpsI GAGTC 2 cut(s) 1204, 1640
PscI ACATGT 1 cut(s) 1488
PsiI TTATAA 2 cut(s) 576, 869
Psp6I CCWGG 4 cut(s) 724, 816, 1518, 1628
PspFI CCCAGC 2 cut(s) 1311, 1688
PspGI CCWGG 4 cut(s) 724, 816, 1518, 1628
PspN4I GGNNCC 2 cut(s) 283, 1623
PstNI CAGNNNCTG 2 cut(s) 1598, 1688
PsuI RGATCY 1 cut(s) 831
PvuII CAGCTG 2 cut(s) 1598, 1685
RsaI GTAC 3 cut(s) 28, 226, 423
RsaNI GTAC 3 cut(s) 27, 225, 422
RseI CAYNNNNRTG 1 cut(s) 1491
SapI GCTCTTC 1 cut(s) 1338
SaqAI TTAA 6 cut(s) 846, 938, 1110, 1403, 1539, 1550
SatI GCNGC 6 cut(s) 292, 295, 339, 756, 1596, 1686
Sau3AI GATC 2 cut(s) 265, 831
SchI GAGTC 2 cut(s) 1204, 1640
ScrFI CCNGG 4 cut(s) 726, 818, 1520, 1630
SduI GDGCHC 1 cut(s) 1624
SfaNI GCATC 4 cut(s) 341, 455, 742, 1558
SfcI CTRYAG 1 cut(s) 1572
SmiMI CAYNNNNRTG 1 cut(s) 1491
Sse9I AATT 6 cut(s) 30, 56, 84, 786, 1204, 1634
SspI AATATT 2 cut(s) 682, 1148
SspMI CTAG 2 cut(s) 111, 321
StyD4I CCNGG 4 cut(s) 724, 816, 1518, 1628
TaaI ACNGT 7 cut(s) 458, 476, 646, 851, 1030, 1330, 1576
TaiI ACGT 2 cut(s) 404, 706
TaqI TCGA 2 cut(s) 8, 1388
TaqII GACCGA 2 cut(s) 1212, 1446
TasI AATT 6 cut(s) 30, 56, 84, 786, 1204, 1634
TatI WGTACW 1 cut(s) 26
TauI GCSGC 4 cut(s) 294, 297, 341, 758
TfiI GAWTC 5 cut(s) 242, 746, 965, 1200, 1502
Tru1I TTAA 6 cut(s) 846, 938, 1110, 1403, 1539, 1550
Tru9I TTAA 6 cut(s) 846, 938, 1110, 1403, 1539, 1550
TscAI CASTG 3 cut(s) 649, 964, 1581
TseFI GTSAC 1 cut(s) 1609
TseI GCWGC 2 cut(s) 1595, 1685
Tsp45I GTSAC 1 cut(s) 1609
TspDTI ATGAA 6 cut(s) 24, 77, 700, 848, 915, 1457
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 3 cut(s) 649, 964, 1581
Van91I CCANNNNNTGG 1 cut(s) 1322
XapI RAATTY 1 cut(s) 1634
XceI RCATGY 2 cut(s) 1049, 1492
XcmI CCANNNNNNNNNTGG 1 cut(s) 1319
XspI CTAG 2 cut(s) 111, 321
ZraI GACGTC 1 cut(s) 704
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.