Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8022184.1

Orthogroup ID

OG0007887

Physical Location & Seq

Genomic Coordinates Forward (+)

167 .. 514

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8022184.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggcgagctgctctctctccaccaccatctcttcctcctacccatcactccaaaccctcctcttccccaaaaagcttccatctttcctctctcttccccaaaccctaacctcccctcacctccgctccgcctcccgccgccgcgcgtcctccacacgagcccagtccgacgacaacggcgccgactcctcccgccactacgatttcgacctcttcaccatcggcgccggcagcggcggcgtccgcgcctcccgcttcgcctccaatttcggcgccaaggtcgccgtctgcgagctccccttcgccgccatctcctccgacaccaccggcggcgtcggcggcacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0000305 GO:0003674 GO:0003824 GO:0004362 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0010035 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0017076 GO:0019725 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0042592 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097159 GO:0097237 GO:0097367 GO:0098754 GO:0098869 GO:1901265 GO:1901363 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko04918 map00480 map04918

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

115

Amino Acids

11.97

Weight (kDa)

9.58

Isoelectric Point (pI)

69.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54660
fragaria_vesca	FvH4_2g22490 FvH4_2g22490 FvH4_2g22490 FvH4_2g22490 FvH4_2g22490 FvH4_2g22490 FvH4_2g22490
malus_domestica	MD05G1205200.v1.1
prunus_persica	Prupe.8G231700_v2.0.a1
pyrus_communis	pycom05g19140 pycom10g16610
rosa_chinensis	RchiOBHm_Chr6g0289441
rosa_laevigata	RLG00000012301
rosa_multiflora	Rmu_co8022184.1_g000001 Rmu_sc0001527.1_g000037
rosa_roxburghii	Rroxscaffold_7G00179210
rosa_rugosa	Rorug06G0203500 Rorug06G0203600 Rorug06G0203700
rosa_samantha	Rh6AG314500 Rh6BG322200 Rh6DG314100
rosa_wichuraiana	Rw6G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	179, 224, 272
AccBSI	CCGCTC	1 cut(s)	126
AccII	CGCG	3 cut(s)	144, 146, 246
AcyI	GRCGYC	5 cut(s)	180, 225, 240, 273, 333
AluBI	AGCT	3 cut(s)	9, 76, 295
AluI	AGCT	3 cut(s)	9, 76, 295
Alw21I	GWGCWC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	9, 231
AspLEI	GCGC	5 cut(s)	146, 182, 227, 248, 275
AsuHPI	GGTGA	2 cut(s)	110, 208
BanI	GGYRCC	3 cut(s)	179, 224, 272
BanII	GRGCYC	2 cut(s)	163, 297
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	5 cut(s)	35, 52, 88, 227, 317
BceAI	ACGGC	2 cut(s)	193, 269
BfoI	RGCGCY	3 cut(s)	183, 228, 276
BisI	GCNGC	9 cut(s)	10, 139, 142, 232, 235, 238, 306, 331, 340
BlsI	GCNGC	9 cut(s)	11, 140, 143, 233, 236, 239, 307, 332, 341
BmiI	GGNNCC	3 cut(s)	181, 226, 274
BmrI	ACTGGG	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	157
BplI	GAGNNNNNCTC	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	345
BsaHI	GRCGYC	5 cut(s)	180, 225, 240, 273, 333
BsaJI	CCNNGG	1 cut(s)	276
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse118I	RCCGGY	2 cut(s)	227, 326
Bse1I	ACTGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	3 cut(s)	50, 178, 304
BseXI	GCAGC	1 cut(s)	243
Bsh1236I	CGCG	3 cut(s)	144, 146, 246
BshNI	GGYRCC	3 cut(s)	179, 224, 272
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	228, 327
Bsp1286I	GDGCHC	2 cut(s)	163, 297
BspFNI	CGCG	3 cut(s)	144, 146, 246
BspLI	GGNNCC	3 cut(s)	181, 226, 274
BspT107I	GGYRCC	3 cut(s)	179, 224, 272
BsrBI	CCGCTC	1 cut(s)	126
BsrFI	RCCGGY	2 cut(s)	227, 326
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	2 cut(s)	227, 326
BssECI	CCNNGG	1 cut(s)	276
BssNI	GRCGYC	5 cut(s)	180, 225, 240, 273, 333
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	156
Bst6I	CTCTTC	4 cut(s)	37, 68, 99, 218
BstACI	GRCGYC	5 cut(s)	180, 225, 240, 273, 333
BstBAI	YACGTR	1 cut(s)	345
BstC8I	GCNNGC	3 cut(s)	7, 229, 293
BstFNI	CGCG	3 cut(s)	144, 146, 246
BstH2I	RGCGCY	3 cut(s)	183, 228, 276
BstHHI	GCGC	5 cut(s)	146, 182, 227, 248, 275
BstMWI	GCNNNNNNNGC	7 cut(s)	231, 237, 243, 252, 281, 336, 339
BstUI	CGCG	3 cut(s)	144, 146, 246
BstV1I	GCAGC	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	7, 229, 293
CfoI	GCGC	5 cut(s)	146, 182, 227, 248, 275
Cfr10I	RCCGGY	2 cut(s)	227, 326
CseI	GACGC	3 cut(s)	135, 229, 322
CviJI	RGCY	4 cut(s)	9, 76, 161, 295
CviKI_1	RGCY	4 cut(s)	9, 76, 161, 295
DinI	GGCGCC	3 cut(s)	181, 226, 274
Eam1104I	CTCTTC	4 cut(s)	37, 68, 99, 218
EarI	CTCTTC	4 cut(s)	37, 68, 99, 218
EciI	GGCGGA	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	163, 297
Eco53kI	GAGCTC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	163, 297
EgeI	GGCGCC	3 cut(s)	181, 226, 274
EheI	GGCGCC	3 cut(s)	181, 226, 274
ErhI	CCWWGG	1 cut(s)	276
FauI	CCCGC	3 cut(s)	143, 200, 260
Fnu4HI	GCNGC	9 cut(s)	10, 139, 142, 232, 235, 238, 306, 331, 340
FriOI	GRGCYC	2 cut(s)	163, 297
Fsp4HI	GCNGC	9 cut(s)	10, 139, 142, 232, 235, 238, 306, 331, 340
GlaI	GCGC	5 cut(s)	145, 181, 226, 247, 274
GluI	GCNGC	9 cut(s)	10, 139, 142, 232, 235, 238, 306, 331, 340
HaeII	RGCGCY	3 cut(s)	183, 228, 276
HapII	CCGG	2 cut(s)	228, 327
HgaI	GACGC	3 cut(s)	135, 229, 322
HhaI	GCGC	5 cut(s)	146, 182, 227, 248, 275
Hin1I	GRCGYC	5 cut(s)	180, 225, 240, 273, 333
Hin6I	GCGC	5 cut(s)	144, 180, 225, 246, 273
HinP1I	GCGC	5 cut(s)	144, 180, 225, 246, 273
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	228, 327
HphI	GGTGA	2 cut(s)	110, 208
Hpy188I	TCNGA	2 cut(s)	169, 319
Hpy99I	CGWCG	2 cut(s)	173, 338
HpyAV	CCTTC	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	7 cut(s)	231, 237, 243, 252, 281, 336, 339
HpySE526I	ACGT	1 cut(s)	344
Hsp92I	GRCGYC	5 cut(s)	180, 225, 240, 273, 333
HspAI	GCGC	5 cut(s)	144, 180, 225, 246, 273
KasI	GGCGCC	3 cut(s)	179, 224, 272
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	131, 300
LpnPI	CCDG	3 cut(s)	176, 241, 340
Lsp1109I	GCAGC	1 cut(s)	243
MaeII	ACGT	1 cut(s)	344
MbiI	CCGCTC	1 cut(s)	126
MboII	GAAGA	4 cut(s)	24, 55, 86, 205
MhlI	GDGCHC	2 cut(s)	163, 297
MluCI	AATT	1 cut(s)	265
Mly113I	GGCGCC	3 cut(s)	180, 225, 273
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	192, 342
MroNI	GCCGGC	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	2 cut(s)	228, 327
MvnI	CGCG	3 cut(s)	144, 146, 246
MwoI	GCNNNNNNNGC	7 cut(s)	231, 237, 243, 252, 281, 336, 339
NaeI	GCCGGC	1 cut(s)	229
NarI	GGCGCC	3 cut(s)	180, 225, 273
NgoMIV	GCCGGC	1 cut(s)	227
NlaIV	GGNNCC	3 cut(s)	181, 226, 274
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PdiI	GCCGGC	1 cut(s)	229
PkrI	GCNGC	9 cut(s)	11, 140, 143, 233, 236, 239, 307, 332, 341
PleI	GAGTC	1 cut(s)	179
PluTI	GGCGCC	3 cut(s)	183, 228, 276
PpsI	GAGTC	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	297
PspN4I	GGNNCC	3 cut(s)	181, 226, 274
SacI	GAGCTC	1 cut(s)	297
SatI	GCNGC	9 cut(s)	10, 139, 142, 232, 235, 238, 306, 331, 340
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	163, 297
SetI	ASST	8 cut(s)	11, 78, 113, 123, 213, 282, 297, 347
SfoI	GGCGCC	3 cut(s)	181, 226, 274
SgrAI	CRCCGGYG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	265
SspDI	GGCGCC	3 cut(s)	179, 224, 272
SstI	GAGCTC	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	276
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	265
TauI	GCSGC	7 cut(s)	141, 144, 237, 240, 308, 333, 342
TseI	GCWGC	2 cut(s)	9, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.