AT3G54826

DNL zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015054
Physical Location & Seq
Forward (+)
20310269 .. 20311854
1586 bp
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UTR
Exon/CDS
Intron
AT3G54826.1

Sequence Viewer

Length: 672 bp
ATGATTAAAAAGGCTTCTTTTATTGTGCTCCGATTCCAAAATTTCACGGAAAATAGAAGCGTCGAGTTCCTCCTCTCCCTCAGGTTGTCAATGGCCGCTAGGTTACTTGCTTTGAGACGCGCTTTGTCTCTTTTCAGCAACCAACAACATCGTTTTCCTTTGTCTCAAGTCTCAACAGAGCAGTTGTCGCTATCAAACTCACTCTTCAGCAGAAGTCATGTTTATGGAAGATTATTTCAGAGACAGTTATCTGTAATCCGTGAGGCAAATGAAGCTTCTGTAACCAATGTCTGCAACTCGTCAAACTCTGCTACTGAATCGGCCAAAGTTCCCTCCCCTGCGACGCCCTCTGAGGAAATGATGGTGAAGTACAAGTCCCAGTTAAAAATAAACCCGAGGCATGACTTCATGATGGTCTTCACTTGCAAGGTCTGTGATACAAGATCTATGAAGATGGCGAGCCGAGAATCATATGAAAACGGCGTTGTGGTGGTACGATGTGGAGGGTGTGATAATCTACATTTGATTGCAGACCGTCGTGGTTGGTTTGGAGAACCAGGAAGCGTGGAGGACTTCCTTGCTTCTCAAGGGGAAGAATTCAAGAAAGGATCCATGGATTCTCTTAACCTAACTCCTGAAGATTTAGCTGGAGGAAAGATTTCTACTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-DNL

Protein Analysis

223

Amino Acids

25.0

Weight (kDa)

9.04

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-DNL PF05180 137 - 198 2.5e-24 DNL zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54826
fragaria_vesca FvH4_7g19000
malus_domestica MD01G1105600.v1.1 MD07G1171800.v1.1
pyrus_communis pycom01g13240 pycom07g16640
rosa_chinensis RchiOBHm_Chr1g0362931
rosa_laevigata RLG00000027611
rosa_multiflora Rmu_sc0001502.1_g000005
rosa_roxburghii Rroxscaffold_4G00293640
rosa_rugosa Rorug01G0302200
rosa_samantha Rh1AG311700 Rh1BG274800 Rh1CG292000 Rh1DG305500
rosa_wichuraiana Rw1G027620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 1 cut(s) 96
AclWI GGATC 2 cut(s) 603, 616
AcoI YGGCCR 2 cut(s) 93, 321
AcsI RAATTY 2 cut(s) 40, 596
AcuI CTGAAG 2 cut(s) 190, 657
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 2 cut(s) 371, 495
AgsI TTSAA 1 cut(s) 601
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 2 cut(s) 275, 647
AluI AGCT 2 cut(s) 275, 647
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 5 cut(s) 109, 132, 168, 175, 235
AlwI GGATC 2 cut(s) 603, 616
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 2 cut(s) 93, 321
ApoI RAATTY 2 cut(s) 40, 596
Asp700I GAANNNNTTC 1 cut(s) 658
AspLEI GCGC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 394
AxyI CCTNAGG 1 cut(s) 80
BamHI GGATCC 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 3 cut(s) 355, 406, 448
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 1 cut(s) 558
BcoDI GTCTC 5 cut(s) 109, 132, 168, 175, 235
BfaI CTAG 1 cut(s) 99
BglII AGATCT 1 cut(s) 443
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 558
BmeT110I CYCGRG 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 610
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 669
BpuEI CTTGAG 2 cut(s) 150, 570
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 395, 612
Bse1I ACTGG 1 cut(s) 379
Bse21I CCTNAGG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 2 cut(s) 395, 612
BseMII CTCAG 2 cut(s) 94, 342
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 95, 323
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 394
BslFI GGGAC 1 cut(s) 361
BsmAI GTCTC 5 cut(s) 109, 132, 168, 175, 235
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 2 cut(s) 95, 323
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 443, 608
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 95, 323
BspCNI CTCAG 2 cut(s) 93, 343
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 610
BspPI GGATC 2 cut(s) 603, 616
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 2 cut(s) 395, 612
BssMI GATC 2 cut(s) 443, 608
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 2 cut(s) 246, 536
Bst6I CTCTTC 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 2 cut(s) 80, 351
BstDSI CCRYGG 1 cut(s) 612
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 446, 611
BstMAI GTCTC 5 cut(s) 109, 132, 168, 175, 235
BstMBI GATC 2 cut(s) 443, 608
BstMWI GCNNNNNNNGC 2 cut(s) 187, 272
BstNI CCWGG 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 556
BstUI CGCG 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 409
BstX2I RGATCY 2 cut(s) 443, 608
BstYI RGATCY 2 cut(s) 443, 608
Bsu36I CCTNAGG 1 cut(s) 80
BsuRI GGCC 2 cut(s) 95, 323
BtgI CCRYGG 1 cut(s) 612
Cac8I GCNNGC 1 cut(s) 460
CciI TCATGA 1 cut(s) 408
CfoI GCGC 1 cut(s) 122
CseI GACGC 3 cut(s) 49, 126, 352
Csp6I GTAC 2 cut(s) 370, 494
CviAII CATG 4 cut(s) 218, 401, 409, 613
CviJI RGCY 6 cut(s) 14, 95, 275, 323, 462, 647
CviKI_1 RGCY 6 cut(s) 14, 95, 275, 323, 462, 647
CviQI GTAC 2 cut(s) 370, 494
DdeI CTNAG 2 cut(s) 80, 351
DpnI GATC 2 cut(s) 445, 610
DpnII GATC 2 cut(s) 443, 608
EaeI YGGCCR 2 cut(s) 93, 321
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 612
Eco57I CTGAAG 2 cut(s) 190, 657
Eco81I CCTNAGG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 4 cut(s) 221, 404, 412, 616
FaiI YATR 8 cut(s) 219, 225, 402, 410, 449, 472, 474, 614
FaqI GGGAC 1 cut(s) 361
FatI CATG 4 cut(s) 217, 400, 408, 612
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 2 cut(s) 95, 323
HgaI GACGC 3 cut(s) 49, 126, 352
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 4 cut(s) 221, 404, 412, 616
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 4 cut(s) 33, 317, 467, 617
HphI GGTGA 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 32, 240, 352
Hpy188III TCNNGA 3 cut(s) 409, 601, 635
Hpy99I CGWCG 3 cut(s) 65, 346, 540
HpyCH4III ACNGT 2 cut(s) 246, 536
HpyCH4V TGCA 3 cut(s) 294, 426, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 272
HpyF3I CTNAG 2 cut(s) 80, 351
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 4 cut(s) 221, 404, 412, 616
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 443, 608
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 7 cut(s) 67, 351, 392, 543, 570, 633, 648
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 102, 280
MalI GATC 2 cut(s) 445, 610
MboI GATC 2 cut(s) 443, 608
MboII GAAGA 6 cut(s) 196, 240, 409, 463, 605, 650
MflI RGATCY 2 cut(s) 443, 608
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 40, 596
MroXI GAANNNNTTC 1 cut(s) 658
MseI TTAA 3 cut(s) 6, 383, 624
MslI CAYNNNNRTG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 187, 272
NcoI CCATGG 1 cut(s) 612
NdeI CATATG 1 cut(s) 472
NdeII GATC 2 cut(s) 443, 608
NlaIII CATG 4 cut(s) 221, 404, 412, 616
NlaIV GGNNCC 1 cut(s) 610
NmeAIII GCCGAG 1 cut(s) 488
PagI TCATGA 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 658
PfeI GAWTC 4 cut(s) 33, 317, 467, 617
PkrI GCNGC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 1 cut(s) 610
PsuI RGATCY 2 cut(s) 443, 608
RsaI GTAC 2 cut(s) 371, 495
RsaNI GTAC 2 cut(s) 370, 494
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 3 cut(s) 6, 383, 624
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 443, 608
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 30
SetI ASST 6 cut(s) 86, 104, 277, 432, 630, 649
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 2 cut(s) 165, 585
SmoI CTYRAG 2 cut(s) 165, 585
Sse9I AATT 2 cut(s) 40, 596
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 556
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 2 cut(s) 246, 536
TaqI TCGA 1 cut(s) 63
TasI AATT 2 cut(s) 40, 596
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 4 cut(s) 33, 317, 467, 617
Tru1I TTAA 3 cut(s) 6, 383, 624
Tru9I TTAA 3 cut(s) 6, 383, 624
TspDTI ATGAA 4 cut(s) 285, 397, 464, 489
TspGWI ACGGA 2 cut(s) 62, 248
XapI RAATTY 2 cut(s) 40, 596
XmnI GAANNNNTTC 1 cut(s) 658
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.