Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001502.1

Orthogroup ID

OG0015054

Physical Location & Seq

Genomic Coordinates Forward (+)

19558 .. 22043

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001502.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggctgctcggatgttgcagaagagaatcggctcactcctcttccgcaatcagccttctctcacccaagcgatcaaggaacaatgtgttccttctgcatattctatcttcagcagatttcagcttggtaaaagagatattcagacggaaacaaagccggctaatcttacaaatgaggatcctaagttggaaaatcatgaagctgatagtttgaagcctagttgtgactcagatgaccaaccctctcactcatctgctggcaaagttgttgagatcaaaatgcacgctgaatacaacttgaaaacatccccgaggcatgacctttgtatggttttcacttgcacaatctgtaacacaagaacaatgaagacagcttctcgagaagcatacgagaaaggtgtggtggtagcgcgctgtaatggatgtgacaacctccacctgtttgctgatcatcttggaatgtttggagagaagtgtacagttgaggactttctggctgctcgtggggaggaggtgaagaagggtactactgatacactgaatctgactattgaagatctggctggaaaggactttgctggaaagaaagtggaaaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

200

Amino Acids

22.2

Weight (kDa)

6.59

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54826
fragaria_vesca	FvH4_7g19000
malus_domestica	MD01G1105600.v1.1 MD07G1171800.v1.1
pyrus_communis	pycom01g13240 pycom07g16640
rosa_chinensis	RchiOBHm_Chr1g0362931
rosa_laevigata	RLG00000027611
rosa_multiflora	Rmu_sc0001502.1_g000005
rosa_roxburghii	Rroxscaffold_4G00293640
rosa_rugosa	Rorug01G0302200
rosa_samantha	Rh1AG311700 Rh1BG274800 Rh1CG292000 Rh1DG305500
rosa_wichuraiana	Rw1G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	412
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	2 cut(s)	173, 186
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	2 cut(s)	478, 526
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	214, 301, 554
AluBI	AGCT	3 cut(s)	124, 203, 374
AluI	AGCT	3 cut(s)	124, 203, 374
AlwI	GGATC	2 cut(s)	173, 186
Ama87I	CYCGRG	2 cut(s)	310, 378
ApeKI	GCWGC	2 cut(s)	5, 497
AspLEI	GCGC	2 cut(s)	412, 414
AsuHPI	GGTGA	2 cut(s)	55, 526
AvaI	CYCGRG	2 cut(s)	310, 378
BamHI	GGATCC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	448
BfaI	CTAG	1 cut(s)	219
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	2 cut(s)	6, 498
BlsI	GCNGC	2 cut(s)	7, 499
BmeT110I	CYCGRG	2 cut(s)	310, 378
BmiI	GGNNCC	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	3 cut(s)	18, 305, 428
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	243
BsePI	GCGCGC	1 cut(s)	410
BseRI	GAGGAG	2 cut(s)	29, 524
BseXI	GCAGC	1 cut(s)	484
Bsh1236I	CGCG	1 cut(s)	412
BsiHKCI	CYCGRG	2 cut(s)	310, 378
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	328
BsoBI	CYCGRG	2 cut(s)	310, 378
Bsp1407I	TGTACA	1 cut(s)	476
Bsp143I	GATC	5 cut(s)	72, 178, 273, 448, 556
BspACI	CCGC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	2 cut(s)	173, 186
BsrFI	RCCGGY	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	476
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	311
BssHII	GCGCGC	1 cut(s)	410
BssMI	GATC	5 cut(s)	72, 178, 273, 448, 556
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	2 cut(s)	17, 47
BstAUI	TGTACA	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	159, 259, 285, 412
BstDEI	CTNAG	2 cut(s)	183, 229
BstF5I	GGATG	3 cut(s)	18, 305, 428
BstFNI	CGCG	1 cut(s)	412
BstHHI	GCGC	2 cut(s)	412, 414
BstKTI	GATC	5 cut(s)	75, 181, 276, 451, 559
BstMBI	GATC	5 cut(s)	72, 178, 273, 448, 556
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	2 cut(s)	178, 556
BstYI	RGATCY	2 cut(s)	178, 556
BtsCI	GGATG	3 cut(s)	18, 305, 428
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	4 cut(s)	159, 259, 285, 412
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	2 cut(s)	412, 414
Cfr10I	RCCGGY	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	477, 525
CviAII	CATG	2 cut(s)	197, 317
CviQI	GTAC	2 cut(s)	477, 525
DdeI	CTNAG	2 cut(s)	183, 229
DpnI	GATC	5 cut(s)	74, 180, 275, 450, 558
DpnII	GATC	5 cut(s)	72, 178, 273, 448, 556
Eam1104I	CTCTTC	2 cut(s)	17, 47
EarI	CTCTTC	2 cut(s)	17, 47
Eco57I	CTGAAG	1 cut(s)	94
Eco88I	CYCGRG	2 cut(s)	310, 378
FaeI	CATG	2 cut(s)	200, 320
FaiI	YATR	5 cut(s)	100, 198, 318, 329, 388
FatI	CATG	2 cut(s)	196, 316
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	6, 498
FokI	GGATG	3 cut(s)	25, 292, 435
Fsp4HI	GCNGC	2 cut(s)	6, 498
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	2 cut(s)	411, 413
GluI	GCNGC	2 cut(s)	6, 498
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	2 cut(s)	412, 414
Hin1II	CATG	2 cut(s)	200, 320
Hin6I	GCGC	2 cut(s)	410, 412
HinP1I	GCGC	2 cut(s)	410, 412
HinfI	GANTC	3 cut(s)	27, 227, 541
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	55, 526
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	4 cut(s)	12, 144, 232, 546
Hpy188III	TCNNGA	3 cut(s)	197, 378, 380
Hpy8I	GTNNAC	1 cut(s)	477
HpyAV	CCTTC	3 cut(s)	66, 102, 514
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4V	TGCA	4 cut(s)	19, 98, 283, 342
HpyF3I	CTNAG	2 cut(s)	183, 229
Hsp92II	CATG	2 cut(s)	200, 320
HspAI	GCGC	2 cut(s)	410, 412
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	5 cut(s)	72, 178, 273, 448, 556
LpnPI	CCDG	7 cut(s)	171, 243, 452, 479, 545, 549, 564
Lsp1109I	GCAGC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	224, 350, 425
MalI	GATC	5 cut(s)	74, 180, 275, 450, 558
MboI	GATC	5 cut(s)	72, 178, 273, 448, 556
MboII	GAAGA	6 cut(s)	34, 34, 100, 379, 529, 566
MflI	RGATCY	2 cut(s)	178, 556
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	8 cut(s)	50, 169, 253, 306, 443, 478, 502, 505
MroNI	GCCGGC	1 cut(s)	157
MspI	CCGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	412
NaeI	GCCGGC	1 cut(s)	159
NdeII	GATC	5 cut(s)	72, 178, 273, 448, 556
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	200, 320
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	224, 425
PaeR7I	CTCGAG	1 cut(s)	378
PagI	TCATGA	1 cut(s)	196
PauI	GCGCGC	1 cut(s)	410
PdiI	GCCGGC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	27, 541
PkrI	GCNGC	2 cut(s)	7, 499
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	178, 556
PteI	GCGCGC	1 cut(s)	410
RsaI	GTAC	2 cut(s)	478, 526
RsaNI	GTAC	2 cut(s)	477, 525
SatI	GCNGC	2 cut(s)	6, 498
Sau3AI	GATC	5 cut(s)	72, 178, 273, 448, 556
SchI	GAGTC	1 cut(s)	221
SetI	ASST	8 cut(s)	126, 205, 324, 376, 400, 435, 441, 516
Sfr274I	CTCGAG	1 cut(s)	378
SlaI	CTCGAG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	481
TaqI	TCGA	1 cut(s)	379
TatI	WGTACW	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	27, 541
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	224, 425
TseI	GCWGC	2 cut(s)	5, 497
Tsp45I	GTSAC	2 cut(s)	224, 425
TspDTI	ATGAA	2 cut(s)	213, 380
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	543
XhoI	CTCGAG	1 cut(s)	378
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.