MD07G1171800.v1.1

DNL-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015054
Physical Location & Seq
Reverse (-)
24872487 .. 24874800
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1171800.v1.1.491

Sequence Viewer

Length: 576 bp
ATGGCGGCTAGGATGTTGCAGAGGCGCTTAGGCTCACTCCTTCTCCGCAATCAGCAGCCTAACTCTCATCTCTTCAAAGACAAATTGTTGGCGGCAGATCAATTTGTTCCTTCTGCAAGTTCTATACTCAGAAGATATGGATTTGACAAAAGAGATCTTCAGACGCAAACAAATCCAACCAATCTGGTTAACGAGGATTTGACAAATCTTGAAGATGGCAGTTTGAAACCCAATAATGATGCGAATGCTATCAACAGTTCCGATACCAAATTTTCTGCTTCTTCCGAGCAGAAAATATCCCCAAGGCATGACCTGGCCATGCTTTTTACCTGCACTGTCTGTGAAACAAGATCCATGAAGACGTGCAGTAGAGAATCATACGAGAAAGGTGTGGTGGTAGCTCGCTGTGGCGGGTGTAACAATCTCCACCTGATTGCTGATCATCTCGGGTATTTTGGAAAACCATCCAACGTTGAGCAATTTCTGGCTGCCCGTGGGGAAGAGGTGAAGAAAGGTTCTGCTGATACGTTGAATCTGACTCTCGAAGACATAGCCGGAATGAAACTTCAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-DNL

Protein Analysis

192

Amino Acids

21.09

Weight (kDa)

8.28

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-DNL PF05180 107 - 167 1.4e-24 DNL zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54826
fragaria_vesca FvH4_7g19000
malus_domestica MD01G1105600.v1.1 MD07G1171800.v1.1
pyrus_communis pycom01g13240 pycom07g16640
rosa_chinensis RchiOBHm_Chr1g0362931
rosa_laevigata RLG00000027611
rosa_multiflora Rmu_sc0001502.1_g000005
rosa_roxburghii Rroxscaffold_4G00293640
rosa_rugosa Rorug01G0302200
rosa_samantha Rh1AG311700 Rh1BG274800 Rh1CG292000 Rh1DG305500
rosa_wichuraiana Rw1G027620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 338
AciI CCGC 4 cut(s) 5, 46, 92, 411
AclI AACGTT 1 cut(s) 471
AclWI GGATC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 2 cut(s) 143, 551
AgsI TTSAA 4 cut(s) 76, 212, 226, 532
AjiI CACGTC 1 cut(s) 363
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 1 cut(s) 401
AluI AGCT 1 cut(s) 401
AlwI GGATC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 2 cut(s) 55, 488
ApoI RAATTY 1 cut(s) 269
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 517
AvaI CYCGRG 1 cut(s) 446
BalI TGGCCA 1 cut(s) 317
BbsI GAAGAC 2 cut(s) 365, 552
BbvI GCAGC 2 cut(s) 67, 475
BccI CCATC 2 cut(s) 209, 472
BciT130I CCWGG 1 cut(s) 314
BclI TGATCA 1 cut(s) 439
BfaI CTAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 338
BglII AGATCT 1 cut(s) 154
BisI GCNGC 4 cut(s) 6, 56, 93, 489
BlsI GCNGC 4 cut(s) 7, 57, 94, 490
Bme1390I CCNGG 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 446
BmgBI CACGTC 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 1 cut(s) 229
BpiI GAAGAC 2 cut(s) 365, 552
Bpu10I CCTNAGC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 302, 493
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 302, 493
BseGI GGATG 2 cut(s) 18, 464
BseMII CTCAG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 67, 475
BsgI GTGCAG 2 cut(s) 316, 385
BshFI GGCC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 1 cut(s) 555
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 446
Bsp143I GATC 4 cut(s) 97, 154, 350, 439
BspACI CCGC 4 cut(s) 5, 46, 92, 411
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 302, 493
BssMI GATC 4 cut(s) 97, 154, 350, 439
BssT1I CCWWGG 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 2 cut(s) 257, 337
Bst6I CTCTTC 2 cut(s) 77, 495
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 2 cut(s) 28, 128
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 2 cut(s) 18, 464
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 4 cut(s) 100, 157, 353, 442
BstMBI GATC 4 cut(s) 97, 154, 350, 439
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 67, 475
BstV2I GAAGAC 2 cut(s) 365, 552
BstX2I RGATCY 2 cut(s) 154, 350
BstYI RGATCY 2 cut(s) 154, 350
BsuRI GGCC 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 493
BtrI CACGTC 1 cut(s) 363
BtsCI GGATG 2 cut(s) 18, 464
BtsIMutI CAGTG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 403
CfoI GCGC 1 cut(s) 27
CseI GACGC 1 cut(s) 172
CviAII CATG 3 cut(s) 308, 319, 355
CviJI RGCY 7 cut(s) 8, 33, 58, 317, 401, 488, 554
CviKI_1 RGCY 7 cut(s) 8, 33, 58, 317, 401, 488, 554
DdeI CTNAG 2 cut(s) 28, 128
DpnI GATC 4 cut(s) 99, 156, 352, 441
DpnII GATC 4 cut(s) 97, 154, 350, 439
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 2 cut(s) 77, 495
EarI CTCTTC 2 cut(s) 77, 495
Eco130I CCWWGG 1 cut(s) 302
Eco57I CTGAAG 2 cut(s) 143, 551
Eco88I CYCGRG 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 3 cut(s) 311, 322, 358
FaiI YATR 7 cut(s) 125, 138, 309, 320, 356, 379, 551
FatI CATG 3 cut(s) 307, 318, 354
FauI CCCGC 1 cut(s) 404
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 4 cut(s) 6, 56, 93, 489
FokI GGATG 2 cut(s) 25, 451
Fsp4HI GCNGC 4 cut(s) 6, 56, 93, 489
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 26
GluI GCNGC 4 cut(s) 6, 56, 93, 489
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 1 cut(s) 317
HapII CCGG 1 cut(s) 555
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 27
Hin1II CATG 3 cut(s) 311, 322, 358
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 3 cut(s) 374, 532, 538
HpaI GTTAAC 1 cut(s) 190
HpaII CCGG 1 cut(s) 555
HphI GGTGA 1 cut(s) 517
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 5 cut(s) 131, 162, 262, 286, 537
Hpy188III TCNNGA 2 cut(s) 209, 542
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 50, 120
HpyCH4III ACNGT 2 cut(s) 257, 337
HpyCH4IV ACGT 3 cut(s) 362, 471, 527
HpyCH4V TGCA 4 cut(s) 19, 116, 333, 366
HpyF3I CTNAG 2 cut(s) 28, 128
HpySE526I ACGT 3 cut(s) 362, 471, 527
Hsp92II CATG 3 cut(s) 311, 322, 358
HspAI GCGC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 439
KspAI GTTAAC 1 cut(s) 190
Kzo9I GATC 4 cut(s) 97, 154, 350, 439
LpnPI CCDG 8 cut(s) 170, 299, 326, 343, 443, 470, 554, 568
Lsp1109I GCAGC 2 cut(s) 67, 475
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 9
MaeII ACGT 3 cut(s) 362, 471, 527
MaeIII GTNAC 1 cut(s) 416
MalI GATC 4 cut(s) 99, 156, 352, 441
MboI GATC 4 cut(s) 97, 154, 350, 439
MboII GAAGA 9 cut(s) 64, 144, 149, 224, 273, 370, 512, 520, 557
MflI RGATCY 2 cut(s) 154, 350
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 4 cut(s) 83, 101, 269, 479
MluNI TGGCCA 1 cut(s) 317
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 2 cut(s) 200, 492
MnlI CCTC 3 cut(s) 15, 187, 496
Mox20I TGGCCA 1 cut(s) 317
MscI TGGCCA 1 cut(s) 317
MseI TTAA 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 317
MspI CCGG 1 cut(s) 555
MspR9I CCNGG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 1 cut(s) 314
NdeII GATC 4 cut(s) 97, 154, 350, 439
NlaIII CATG 3 cut(s) 311, 322, 358
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 374, 532
PkrI GCNGC 4 cut(s) 7, 57, 94, 490
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Psp1406I AACGTT 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PsuI RGATCY 2 cut(s) 154, 350
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 4 cut(s) 6, 56, 93, 489
Sau3AI GATC 4 cut(s) 97, 154, 350, 439
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 1 cut(s) 314
SfaNI GCATC 1 cut(s) 229
Sse9I AATT 4 cut(s) 83, 101, 269, 479
SsiI CCGC 4 cut(s) 5, 46, 92, 411
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 2 cut(s) 257, 337
TaiI ACGT 3 cut(s) 365, 474, 530
TaqI TCGA 1 cut(s) 543
TasI AATT 4 cut(s) 83, 101, 269, 479
TauI GCSGC 2 cut(s) 8, 95
TfiI GAWTC 2 cut(s) 374, 532
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 340
TseI GCWGC 2 cut(s) 55, 488
TspDTI ATGAA 2 cut(s) 371, 575
TspRI CASTG 1 cut(s) 340
XapI RAATTY 1 cut(s) 269
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.