MD01G1105600.v1.1

DNL-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0015054
Physical Location & Seq
Reverse (-)
21898185 .. 21900485
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1105600.v1.1.491

Sequence Viewer

Length: 579 bp
ATGGCGGCTCGAATGTTGCAGAGACGCTTAGGCTCACTCCTCCGCAGTCAGCAGCCTAACGCCCATCTCTTCAAAGATCAATTTGTTCCTTCAGCAAGTTCCATACTCAGAAGATACGGATTCGACAAAAGAGAGATTCAGACGCAAACAAATCCAACAAATCCGGCTAACGAGGGTTTGGTGAATCTTGAATATAGCCGTTTGAAGCCTAAGATTGACGCAAATGCTATCAACAGTTCCGATGCCAAATTTGCCGATGCTTCCACCCAGAAAATATCCCCAAGGCATGACCTTGCCATGCTTTTTACTTGCAAAGTCTGTGAAACAAGATCTATGAAGACGTGCAGCAGAGAATCATACGAGCAAGGTGTGGTGGTAGCTCGCTGTGGCGGGTGTAACAATCTCCACCTGATTGCTGATCATCTCGGGTATTTCGGACAACCATCCAGCATTGAGCAATTTCTGGCTGCCCGCGGGGAAGAGGTGAAGAAAGGTTCCGCTGATACGCTGAATCTGACTCTTGAAGATATAGCCGGAAAGAAACCTGGTGAAGGGGCTGAACTTAAGCAATTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-DNL

Protein Analysis

193

Amino Acids

21.21

Weight (kDa)

8.81

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-DNL PF05180 100 - 160 2.5e-24 DNL zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54826
fragaria_vesca FvH4_7g19000
malus_domestica MD01G1105600.v1.1 MD07G1171800.v1.1
pyrus_communis pycom01g13240 pycom07g16640
rosa_chinensis RchiOBHm_Chr1g0362931
rosa_laevigata RLG00000027611
rosa_multiflora Rmu_sc0001502.1_g000005
rosa_roxburghii Rroxscaffold_4G00293640
rosa_rugosa Rorug01G0302200
rosa_samantha Rh1AG311700 Rh1BG274800 Rh1CG292000 Rh1DG305500
rosa_wichuraiana Rw1G027620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 474
AciI CCGC 6 cut(s) 5, 43, 390, 472, 474, 498
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 551
AflII CTTAAG 1 cut(s) 563
AgsI TTSAA 4 cut(s) 73, 191, 205, 524
AjiI CACGTC 1 cut(s) 342
AjnI CCWGG 1 cut(s) 544
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
Alw26I GTCTC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 425
ApeKI GCWGC 3 cut(s) 52, 345, 467
ApoI RAATTY 1 cut(s) 248
AsuHPI GGTGA 3 cut(s) 193, 496, 560
AvaI CYCGRG 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 344
BbvI GCAGC 3 cut(s) 64, 357, 454
BccI CCATC 2 cut(s) 72, 451
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 546
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 16
BfrI CTTAAG 1 cut(s) 563
BglII AGATCT 1 cut(s) 329
BisI GCNGC 4 cut(s) 6, 53, 346, 468
BlsI GCNGC 4 cut(s) 7, 54, 347, 469
Bme1390I CCNGG 1 cut(s) 546
BmeT110I CYCGRG 1 cut(s) 425
BmgBI CACGTC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 496
BmrFI CCNGG 1 cut(s) 546
BmsI GCATC 2 cut(s) 232, 247
BpiI GAAGAC 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 281, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 551
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 281, 472
BseGI GGATG 1 cut(s) 443
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMII CTCAG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 3 cut(s) 64, 357, 454
BsgI GTGCAG 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 474
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 2 cut(s) 164, 534
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsoBI CYCGRG 1 cut(s) 425
Bsp143I GATC 3 cut(s) 76, 329, 418
BspACI CCGC 6 cut(s) 5, 43, 390, 472, 474, 498
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 1 cut(s) 496
BspTI CTTAAG 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 281, 472
BssMI GATC 3 cut(s) 76, 329, 418
BssT1I CCWWGG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 74, 474
BstAFI CTTAAG 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 382, 472
BstDEI CTNAG 3 cut(s) 28, 107, 210
BstDSI CCRYGG 1 cut(s) 472
BstENI CCTNNNNNAGG 1 cut(s) 549
BstF5I GGATG 1 cut(s) 443
BstFNI CGCG 1 cut(s) 474
BstKTI GATC 3 cut(s) 79, 332, 421
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 3 cut(s) 76, 329, 418
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 546
BstSCI CCNGG 1 cut(s) 544
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 3 cut(s) 64, 357, 454
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BtgI CCRYGG 1 cut(s) 472
BtrI CACGTC 1 cut(s) 342
BtsCI GGATG 1 cut(s) 443
Cac8I GCNNGC 2 cut(s) 382, 472
Cfr42I CCGCGG 1 cut(s) 475
CseI GACGC 3 cut(s) 33, 151, 227
CsiI ACCWGGT 1 cut(s) 544
CviAII CATG 2 cut(s) 287, 298
DdeI CTNAG 3 cut(s) 28, 107, 210
DpnI GATC 3 cut(s) 78, 331, 420
DpnII GATC 3 cut(s) 76, 329, 418
Eam1104I CTCTTC 2 cut(s) 74, 474
EarI CTCTTC 2 cut(s) 74, 474
Eco130I CCWWGG 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 2 cut(s) 290, 301
FaiI YATR 7 cut(s) 104, 195, 288, 299, 335, 358, 530
FatI CATG 2 cut(s) 286, 297
FauI CCCGC 3 cut(s) 383, 467, 479
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 4 cut(s) 6, 53, 346, 468
FokI GGATG 1 cut(s) 430
Fsp4HI GCNGC 4 cut(s) 6, 53, 346, 468
GluI GCNGC 4 cut(s) 6, 53, 346, 468
HapII CCGG 2 cut(s) 164, 534
HgaI GACGC 3 cut(s) 33, 151, 227
Hin1II CATG 2 cut(s) 290, 301
HinfI GANTC 6 cut(s) 120, 136, 184, 353, 511, 517
HpaII CCGG 2 cut(s) 164, 534
HphI GGTGA 3 cut(s) 193, 496, 560
Hpy188I TCNGA 5 cut(s) 110, 141, 241, 437, 516
Hpy188III TCNNGA 2 cut(s) 188, 521
HpyAV CCTTC 2 cut(s) 99, 545
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 3 cut(s) 19, 312, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 28, 107, 210
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 2 cut(s) 290, 301
Ksp22I TGATCA 1 cut(s) 418
KspI CCGCGG 1 cut(s) 475
Kzo9I GATC 3 cut(s) 76, 329, 418
LpnPI CCDG 8 cut(s) 177, 281, 422, 449, 460, 531, 547, 558
Lsp1109I GCAGC 3 cut(s) 64, 357, 454
LweI GCATC 2 cut(s) 232, 247
MabI ACCWGGT 1 cut(s) 544
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 395
MalI GATC 3 cut(s) 78, 331, 420
MboI GATC 3 cut(s) 76, 329, 418
MboII GAAGA 6 cut(s) 61, 123, 349, 491, 499, 536
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 1 cut(s) 329
MluCI AATT 4 cut(s) 80, 248, 458, 569
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 3 cut(s) 50, 166, 475
MseI TTAA 1 cut(s) 564
MspA1I CMGCKG 2 cut(s) 474, 500
MspCI CTTAAG 1 cut(s) 563
MspI CCGG 2 cut(s) 164, 534
MspR9I CCNGG 1 cut(s) 546
MunI CAATTG 1 cut(s) 569
MvaI CCWGG 1 cut(s) 546
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 3 cut(s) 76, 329, 418
NlaIII CATG 2 cut(s) 290, 301
NlaIV GGNNCC 1 cut(s) 496
PfeI GAWTC 5 cut(s) 120, 136, 184, 353, 511
PkrI GCNGC 4 cut(s) 7, 54, 347, 469
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 496
PsuI RGATCY 1 cut(s) 329
SacII CCGCGG 1 cut(s) 475
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 4 cut(s) 6, 53, 346, 468
Sau3AI GATC 3 cut(s) 76, 329, 418
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 1 cut(s) 546
SetI ASST 8 cut(s) 294, 344, 370, 382, 411, 486, 496, 547
SexAI ACCWGGT 1 cut(s) 544
SfaNI GCATC 2 cut(s) 232, 247
Sfr303I CCGCGG 1 cut(s) 475
SgrBI CCGCGG 1 cut(s) 475
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 4 cut(s) 80, 248, 458, 569
SsiI CCGC 6 cut(s) 5, 43, 390, 472, 474, 498
StyD4I CCNGG 1 cut(s) 544
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 344
TaqI TCGA 2 cut(s) 10, 123
TasI AATT 4 cut(s) 80, 248, 458, 569
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 5 cut(s) 120, 136, 184, 353, 511
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TseI GCWGC 3 cut(s) 52, 345, 467
TspDTI ATGAA 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 132
Vha464I CTTAAG 1 cut(s) 563
XagI CCTNNNNNAGG 1 cut(s) 549
XapI RAATTY 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.