Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011891

Physical Location & Seq

Genomic Coordinates Reverse (-)

20341357 .. 20342464

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTTCGGTCGCCGTCGTCTCCTCCTCCGTTACCAACAAGCCTCACTCTATCAGATTCTCTCTTAAACCAACGTCGGCACTCGTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAACCAACTAAATTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGAAACTGGTGAATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGTGTGGATTCTCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATGTGAATATTCTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAATTGGCCGACGTTTCCTCAGCTTTATATCGGCGGTGAGTTTTTCGGTGGTTGTGATATTACTCTTGAGGCGTTTAAGACTGGAGAATTGCAGGAAGAGGTGGAGAAAGCTATGTGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015291 GO:0015297 GO:0022804 GO:0022857 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

173

Amino Acids

19.31

Weight (kDa)

8.67

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	84 - 147	2e-22	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54900
fragaria_vesca	FvH4_6g00720 FvH4_6g00720
malus_domestica	MD04G1241900.v1.1 MD12G1258800.v1.1
prunus_persica	Prupe.6G359300_v2.0.a1 Prupe.6G359300_v2.0.a1
pyrus_communis	pycom04g21340 pycom12g23730
rosa_chinensis	RchiOBHm_Chr3g0448191
rosa_laevigata	RLG00000025939
rosa_multiflora	Rmu_sc0013667.1_g000004
rosa_roxburghii	Rroxscaffold_6G00426330
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008700 Rh3BG008200 Rh3CG008300 Rh3DG008900
rosa_wichuraiana	Rw3G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	206, 432
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	176, 238
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	322
AluBI	AGCT	4 cut(s)	136, 163, 421, 509
AluI	AGCT	4 cut(s)	136, 163, 421, 509
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	2 cut(s)	58, 270
AoxI	GGCC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	176, 238
AsuHPI	GGTGA	2 cut(s)	247, 446
AsuII	TTCGAA	3 cut(s)	152, 342, 398
Bbv12I	GWGCWC	1 cut(s)	518
BbvCI	CCTCAGC	1 cut(s)	417
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	32
BcoDI	GTCTC	2 cut(s)	58, 270
BisI	GCNGC	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	207
BmsI	GCATC	1 cut(s)	173
BpmI	CTGGAG	3 cut(s)	245, 380, 501
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	187
Bpu14I	TTCGAA	3 cut(s)	152, 342, 398
BpuEI	CTTGAG	2 cut(s)	143, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	237, 484
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	201, 431
BseNI	ACTGG	2 cut(s)	237, 484
BseRI	GAGGAG	2 cut(s)	46, 49
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	406
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	58, 270
BsmBI	CGTCTC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	406
Bsp119I	TTCGAA	3 cut(s)	152, 342, 398
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	1 cut(s)	11
Bsp1720I	GCTNAGC	1 cut(s)	187
BspACI	CCGC	2 cut(s)	206, 432
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	2 cut(s)	200, 430
BspT104I	TTCGAA	3 cut(s)	152, 342, 398
BsrI	ACTGG	2 cut(s)	237, 484
BssMI	GATC	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	149, 307
Bst6I	CTCTTC	1 cut(s)	489
BstBI	TTCGAA	3 cut(s)	152, 342, 398
BstDEI	CTNAG	2 cut(s)	187, 417
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	2 cut(s)	58, 270
BstMBI	GATC	1 cut(s)	11
BstMCI	CGRYCG	1 cut(s)	45
BstXI	CCANNNNNNTGG	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	303
CseI	GACGC	1 cut(s)	180
CviJI	RGCY	8 cut(s)	5, 76, 136, 163, 197, 406, 421, 509
CviKI_1	RGCY	8 cut(s)	5, 76, 136, 163, 197, 406, 421, 509
DdeI	CTNAG	2 cut(s)	187, 417
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	404
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
EcoRI	GAATTC	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	58
FaiI	YATR	4 cut(s)	126, 263, 426, 512
Fnu4HI	GCNGC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	206
GsuI	CTGGAG	3 cut(s)	245, 380, 501
HaeIII	GGCC	1 cut(s)	406
HgaI	GACGC	1 cut(s)	180
HinfI	GANTC	4 cut(s)	90, 154, 294, 325
HphI	GGTGA	2 cut(s)	247, 446
Hpy188I	TCNGA	6 cut(s)	11, 89, 182, 244, 315, 330
Hpy188III	TCNNGA	4 cut(s)	283, 359, 464, 519
Hpy99I	CGWCG	5 cut(s)	53, 112, 122, 196, 412
HpyCH4III	ACNGT	2 cut(s)	149, 307
HpyCH4IV	ACGT	2 cut(s)	107, 410
HpyCH4V	TGCA	1 cut(s)	490
HpyF3I	CTNAG	2 cut(s)	187, 417
HpySE526I	ACGT	2 cut(s)	107, 410
Kzo9I	GATC	1 cut(s)	11
LpnPI	CCDG	5 cut(s)	209, 218, 344, 465, 476
LweI	GCATC	1 cut(s)	173
MaeII	ACGT	2 cut(s)	107, 410
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	3 cut(s)	334, 356, 506
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	4 cut(s)	176, 238, 400, 485
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	7 cut(s)	67, 70, 87, 369, 426, 460, 490
MseI	TTAA	4 cut(s)	99, 213, 387, 474
NdeII	GATC	1 cut(s)	11
NspV	TTCGAA	3 cut(s)	152, 342, 398
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PfeI	GAWTC	4 cut(s)	90, 154, 294, 325
PkrI	GCNGC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	99, 213, 387, 474
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	518
SetI	ASST	8 cut(s)	32, 110, 138, 165, 413, 423, 501, 511
SfaNI	GCATC	1 cut(s)	173
SfuI	TTCGAA	3 cut(s)	152, 342, 398
SmlI	CTYRAG	2 cut(s)	158, 464
SmoI	CTYRAG	2 cut(s)	158, 464
Sse9I	AATT	4 cut(s)	176, 238, 400, 485
SsiI	CCGC	2 cut(s)	206, 432
SspI	AATATT	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	149, 307
TaiI	ACGT	2 cut(s)	110, 413
TaqI	TCGA	3 cut(s)	152, 342, 398
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	4 cut(s)	176, 238, 400, 485
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	4 cut(s)	90, 154, 294, 325
Tru1I	TTAA	4 cut(s)	99, 213, 387, 474
Tru9I	TTAA	4 cut(s)	99, 213, 387, 474
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	176, 238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.