Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013667.1

Orthogroup ID

OG0011891

Physical Location & Seq

Genomic Coordinates Reverse (-)

14897 .. 16936

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013667.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgtggagtgttggggccttggactcaatcactataacaaccccatctccgtcgtccaatcggttcagagctctggccaaaccacccacttgttcactccacgttcactacccctctagacctctccgagctcttcccaccttcactctttcaaatcaatccttctctttccgacccaagagagctctctctttccgatgctctgccgcattaactccagagctgaagagtacgctggacaaagttgttacttcacacaaagtggttctgtttatgaagggaacaaaggacttcccacagtgtggattttcaaacactgtcgtacaaatattgaggtcgttgaatgtaccttttgagacaataaacatcctagaaaatgagttcttgcgtcagggattgaaggagtattccagctggccaacatttcctcagctttatgttgaaggagagttctttggtggttgtgacatcactgttgatgcatacaaaagcggggagttgcaggaagtactggagaaggcaatgtgctcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015291 GO:0015297 GO:0022804 GO:0022857 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

177

Amino Acids

19.82

Weight (kDa)

8.85

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54900
fragaria_vesca	FvH4_6g00720 FvH4_6g00720
malus_domestica	MD04G1241900.v1.1 MD12G1258800.v1.1
prunus_persica	Prupe.6G359300_v2.0.a1 Prupe.6G359300_v2.0.a1
pyrus_communis	pycom04g21340 pycom12g23730
rosa_chinensis	RchiOBHm_Chr3g0448191
rosa_laevigata	RLG00000025939
rosa_multiflora	Rmu_sc0013667.1_g000004
rosa_roxburghii	Rroxscaffold_6G00426330
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008700 Rh3BG008200 Rh3CG008300 Rh3DG008900
rosa_wichuraiana	Rw3G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AciI	CCGC	2 cut(s)	207, 492
AcoI	YGGCCR	2 cut(s)	75, 416
AcuI	CTGAAG	1 cut(s)	245
AdeI	CACNNNGTG	2 cut(s)	262, 302
AfaI	GTAC	4 cut(s)	232, 324, 348, 510
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	5 cut(s)	153, 312, 343, 400, 443
AluBI	AGCT	6 cut(s)	71, 131, 185, 223, 414, 433
AluI	AGCT	6 cut(s)	71, 131, 185, 223, 414, 433
Alw21I	GWGCWC	4 cut(s)	73, 133, 187, 530
Alw26I	GTCTC	1 cut(s)	350
AoxI	GGCC	3 cut(s)	15, 75, 416
AspS9I	GGNCC	1 cut(s)	15
BalI	TGGCCA	2 cut(s)	77, 418
BanII	GRGCYC	3 cut(s)	73, 133, 187
Bbv12I	GWGCWC	4 cut(s)	73, 133, 187, 530
BbvCI	CCTCAGC	1 cut(s)	429
BccI	CCATC	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	117, 371
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BmcAI	AGTACT	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	16
BmsI	GCATC	2 cut(s)	188, 469
BpmI	CTGGAG	2 cut(s)	201, 533
Bpu10I	CCTNAGC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	516
BshFI	GGCC	3 cut(s)	17, 77, 418
BsiHKAI	GWGCWC	4 cut(s)	73, 133, 187, 530
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	17, 77, 418
Bsp1286I	GDGCHC	4 cut(s)	73, 133, 187, 530
BspACI	CCGC	2 cut(s)	207, 492
BspANI	GGCC	3 cut(s)	17, 77, 418
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	3 cut(s)	300, 319, 475
Bst6I	CTCTTC	2 cut(s)	138, 221
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	429
BstF5I	GGATG	1 cut(s)	366
BstMAI	GTCTC	1 cut(s)	350
BsuRI	GGCC	3 cut(s)	17, 77, 418
BtsCI	GGATG	1 cut(s)	366
BtsIMutI	CAGTG	3 cut(s)	305, 315, 471
Cac8I	GCNNGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	15
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	4 cut(s)	231, 323, 347, 509
CviJI	RGCY	9 cut(s)	17, 71, 77, 131, 185, 223, 414, 418, 433
CviKI_1	RGCY	9 cut(s)	17, 71, 77, 131, 185, 223, 414, 418, 433
CviQI	GTAC	4 cut(s)	231, 323, 347, 509
DdeI	CTNAG	1 cut(s)	429
DraIII	CACNNNGTG	2 cut(s)	262, 302
EaeI	YGGCCR	2 cut(s)	75, 416
Eam1104I	CTCTTC	2 cut(s)	138, 221
EarI	CTCTTC	2 cut(s)	138, 221
Ecl136II	GAGCTC	3 cut(s)	71, 131, 185
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	3 cut(s)	73, 133, 187
Eco53kI	GAGCTC	3 cut(s)	71, 131, 185
Eco57I	CTGAAG	1 cut(s)	245
EcoICRI	GAGCTC	3 cut(s)	71, 131, 185
EcoO109I	RGGNCCY	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	484
EcoT38I	GRGCYC	3 cut(s)	73, 133, 187
ErhI	CCWWGG	1 cut(s)	18
FaiI	YATR	4 cut(s)	35, 275, 438, 484
FauI	CCCGC	1 cut(s)	485
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	3 cut(s)	73, 133, 187
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	117, 371
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	2 cut(s)	201, 533
HaeIII	GGCC	3 cut(s)	17, 77, 418
HgaI	GACGC	1 cut(s)	377
HinfI	GANTC	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	95, 106
Hpy188I	TCNGA	4 cut(s)	68, 128, 173, 197
Hpy188III	TCNNGA	3 cut(s)	117, 218, 531
Hpy8I	GTNNAC	2 cut(s)	95, 106
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	6 cut(s)	151, 172, 271, 394, 437, 511
HpyCH4III	ACNGT	3 cut(s)	300, 319, 475
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	482, 502
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	1 cut(s)	102
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	533
LpnPI	CCDG	8 cut(s)	59, 221, 231, 377, 400, 424, 488, 497
LweI	GCATC	2 cut(s)	188, 469
MaeI	CTAG	2 cut(s)	117, 371
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	247, 464
MboII	GAAGA	2 cut(s)	125, 238
MhlI	GDGCHC	4 cut(s)	73, 133, 187, 530
MlsI	TGGCCA	2 cut(s)	77, 418
MluNI	TGGCCA	2 cut(s)	77, 418
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	4 cut(s)	124, 132, 327, 438
Mox20I	TGGCCA	2 cut(s)	77, 418
Mph1103I	ATGCAT	1 cut(s)	484
MscI	TGGCCA	2 cut(s)	77, 418
MseI	TTAA	1 cut(s)	212
Msp20I	TGGCCA	2 cut(s)	77, 418
MspA1I	CMGCKG	1 cut(s)	414
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	464
NsiI	ATGCAT	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Psp124BI	GAGCTC	3 cut(s)	73, 133, 187
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	414
RsaI	GTAC	4 cut(s)	232, 324, 348, 510
RsaNI	GTAC	4 cut(s)	231, 323, 347, 509
SacI	GAGCTC	3 cut(s)	73, 133, 187
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	15
ScaI	AGTACT	1 cut(s)	510
SchI	GAGTC	1 cut(s)	17
SduI	GDGCHC	4 cut(s)	73, 133, 187, 530
SfaNI	GCATC	2 cut(s)	188, 469
SsiI	CCGC	2 cut(s)	207, 492
SspI	AATATT	1 cut(s)	330
SspMI	CTAG	2 cut(s)	117, 371
SstI	GAGCTC	3 cut(s)	73, 133, 187
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	300, 319, 475
TaiI	ACGT	1 cut(s)	105
TatI	WGTACW	1 cut(s)	508
TauI	GCSGC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	3 cut(s)	305, 322, 478
TseFI	GTSAC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	3 cut(s)	305, 322, 478
Van91I	CCANNNNNTGG	1 cut(s)	302
XbaI	TCTAGA	1 cut(s)	116
XspI	CTAG	2 cut(s)	117, 371
ZrmI	AGTACT	1 cut(s)	510
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.