RLG00000025939

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011891
Physical Location & Seq
Reverse (-)
49332315 .. 49334369
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025939

Sequence Viewer

Length: 534 bp
ATGTGGAGTGTTGGGGCCTTGGACTCAATCACTATAACAGTCCCATCTCCGTCGTCCAATCGGTTCAGAGCTCTGGCCAAACCACCCACTTGTTCACTCCACGTTCACTACCCCTCTAGGCCTCTCCGAGCTCTTCCTACCTTCACTCTTTCAAATCAATCCTTCTCTTTCCGACCCAAGAGAGCTCTCTCTTTCCGATGCACTGCCGCATTAACTCCAGAGCTGAAGAGTACGCTGGACAAAGTTGTTACTTCACACAAAGTGGTTCTGTTTATGAAGGGAACAAAGGACTTCCCACAGTGTGGATTTTCAAACACTGTCGTACAAATACTGAGGTCGTTGAATGTACCTTTCGAAACAATAAACATCCTGGAAAATGAGTTCTTGCGTCAGGGATTGAAGGAGTATTCCAGCTGGCCAACATTTCCTCAGCTTTATGTTGAAGGAGAGTTCTTTGGTGGTTGTGACATCACTGTTGATGCATACAAAAGCGGGGAGTTGCAGGAAGTACTGGAGAAGGCAATGTGCTCCTGA

Protein Analysis

178

Amino Acids

19.83

Weight (kDa)

8.85

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 88 - 151 2.7e-21 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54900
fragaria_vesca FvH4_6g00720 FvH4_6g00720
malus_domestica MD04G1241900.v1.1 MD12G1258800.v1.1
prunus_persica Prupe.6G359300_v2.0.a1 Prupe.6G359300_v2.0.a1
pyrus_communis pycom04g21340 pycom12g23730
rosa_chinensis RchiOBHm_Chr3g0448191
rosa_laevigata RLG00000025939
rosa_multiflora Rmu_sc0013667.1_g000004
rosa_roxburghii Rroxscaffold_6G00426330
rosa_rugosa Rorug02G0608500
rosa_samantha Rh3AG008700 Rh3BG008200 Rh3CG008300 Rh3DG008900
rosa_wichuraiana Rw3G000690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AciI CCGC 2 cut(s) 207, 492
AcoI YGGCCR 2 cut(s) 75, 416
AcuI CTGAAG 1 cut(s) 245
AdeI CACNNNGTG 2 cut(s) 262, 302
AfaI GTAC 4 cut(s) 232, 324, 348, 510
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 5 cut(s) 153, 312, 343, 400, 443
AjnI CCWGG 1 cut(s) 369
AloI GAACNNNNNNTCC 2 cut(s) 365, 397
AluBI AGCT 6 cut(s) 71, 131, 185, 223, 414, 433
AluI AGCT 6 cut(s) 71, 131, 185, 223, 414, 433
Alw21I GWGCWC 4 cut(s) 73, 133, 187, 530
AoxI GGCC 4 cut(s) 15, 75, 119, 416
AspS9I GGNCC 1 cut(s) 15
AsuII TTCGAA 1 cut(s) 354
BalI TGGCCA 2 cut(s) 77, 418
BanII GRGCYC 3 cut(s) 73, 133, 187
Bbv12I GWGCWC 4 cut(s) 73, 133, 187, 530
BbvCI CCTCAGC 1 cut(s) 429
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 371
BfaI CTAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmcAI AGTACT 1 cut(s) 510
Bme1390I CCNGG 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 2 cut(s) 188, 469
BpmI CTGGAG 2 cut(s) 201, 533
Bpu10I CCTNAGC 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 2 cut(s) 323, 443
BseNI ACTGG 1 cut(s) 516
BshFI GGCC 4 cut(s) 17, 77, 121, 418
BsiHKAI GWGCWC 4 cut(s) 73, 133, 187, 530
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 4 cut(s) 17, 77, 121, 418
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 4 cut(s) 73, 133, 187, 530
BspACI CCGC 2 cut(s) 207, 492
BspANI GGCC 4 cut(s) 17, 77, 121, 418
BspCNI CTCAG 2 cut(s) 324, 442
BspLI GGNNCC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 1 cut(s) 516
BssECI CCNNGG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 4 cut(s) 40, 300, 319, 475
Bst6I CTCTTC 2 cut(s) 138, 221
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 2 cut(s) 332, 429
BstF5I GGATG 1 cut(s) 366
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 369
BsuRI GGCC 4 cut(s) 17, 77, 121, 418
BtsCI GGATG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 4 cut(s) 201, 305, 315, 471
Cac8I GCNNGC 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 377
Csp6I GTAC 4 cut(s) 231, 323, 347, 509
CviQI GTAC 4 cut(s) 231, 323, 347, 509
DdeI CTNAG 2 cut(s) 332, 429
DraIII CACNNNGTG 2 cut(s) 262, 302
EaeI YGGCCR 2 cut(s) 75, 416
Eam1104I CTCTTC 2 cut(s) 138, 221
EarI CTCTTC 2 cut(s) 138, 221
Ecl136II GAGCTC 3 cut(s) 71, 131, 185
Eco130I CCWWGG 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 121
Eco24I GRGCYC 3 cut(s) 73, 133, 187
Eco53kI GAGCTC 3 cut(s) 71, 131, 185
Eco57I CTGAAG 1 cut(s) 245
EcoICRI GAGCTC 3 cut(s) 71, 131, 185
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 484
EcoT38I GRGCYC 3 cut(s) 73, 133, 187
ErhI CCWWGG 1 cut(s) 18
FaiI YATR 4 cut(s) 35, 275, 438, 484
FaqI GGGAC 1 cut(s) 26
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 3 cut(s) 73, 133, 187
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 117
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 2 cut(s) 201, 533
HaeIII GGCC 4 cut(s) 17, 77, 121, 418
HgaI GACGC 1 cut(s) 377
HinfI GANTC 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 95, 106
Hpy188I TCNGA 4 cut(s) 68, 128, 173, 197
Hpy188III TCNNGA 2 cut(s) 218, 531
Hpy8I GTNNAC 2 cut(s) 95, 106
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 6 cut(s) 151, 172, 271, 394, 437, 511
HpyCH4III ACNGT 4 cut(s) 40, 300, 319, 475
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 201, 482, 502
HpyF3I CTNAG 2 cut(s) 332, 429
HpySE526I ACGT 1 cut(s) 102
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 533
LweI GCATC 2 cut(s) 188, 469
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 247, 464
MboII GAAGA 2 cut(s) 125, 238
MhlI GDGCHC 4 cut(s) 73, 133, 187, 530
MlsI TGGCCA 2 cut(s) 77, 418
MluNI TGGCCA 2 cut(s) 77, 418
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 4 cut(s) 124, 132, 327, 438
Mox20I TGGCCA 2 cut(s) 77, 418
Mph1103I ATGCAT 1 cut(s) 484
MscI TGGCCA 2 cut(s) 77, 418
MseI TTAA 1 cut(s) 212
Msp20I TGGCCA 2 cut(s) 77, 418
MspA1I CMGCKG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 464
NsiI ATGCAT 1 cut(s) 484
NspV TTCGAA 1 cut(s) 354
PceI AGGCCT 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 138
PflMI CCANNNNNTGG 1 cut(s) 302
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp124BI GAGCTC 3 cut(s) 73, 133, 187
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 414
RsaI GTAC 4 cut(s) 232, 324, 348, 510
RsaNI GTAC 4 cut(s) 231, 323, 347, 509
SacI GAGCTC 3 cut(s) 73, 133, 187
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 15
ScaI AGTACT 1 cut(s) 510
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 4 cut(s) 73, 133, 187, 530
SfaNI GCATC 2 cut(s) 188, 469
SfuI TTCGAA 1 cut(s) 354
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 2 cut(s) 207, 492
SspMI CTAG 1 cut(s) 117
SstI GAGCTC 3 cut(s) 73, 133, 187
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 4 cut(s) 40, 300, 319, 475
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 354
TatI WGTACW 1 cut(s) 508
TauI GCSGC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 4 cut(s) 208, 305, 322, 478
TseFI GTSAC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 4 cut(s) 208, 305, 322, 478
Van91I CCANNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.