Rorug02G0608500

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000987
Physical Location & Seq
Reverse (-)
72552675 .. 72559718
7044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0608500.1

Sequence Viewer

Length: 1095 bp
ATGCAGGAGGTTTACGGTGACGAGAAATTTTTCAAAAATTGGCGTGGTGTTCGCCCTTGTGTTAGGAGGGTGCCTGGGAAGGCTTACTTGGCAGTAATGGGATATTATTGTGATGACTCGAGTCACTCGACCAACCCTGAGGCGAAGCAAATACGACAGGTTTCAGCTGATGAGTTTGAGAACGAAAAGGCTAAGAAGCCTAAGGTGCATTACGTGACACCAACTCCCGGCAACGTGCAGACTCCACCACTTCTAGTAAACAAAGTTTACGATGACGAGAAGAATCTTGGGAATATCATCAGTAACGAGATCCACTTGATCTCGAAGCGCTTTTTGCCGAAGCCAACTCTAATGCCGAAGCCAACTCCGGTGCCGAAGCCAACGCCGGTGCCGAAGCCAACTCCAAGGACGAAGCCACCGCCGTCGCCGTCGAAGACACCGCCGTCAAAGCCACCACCGTCGAAGTCTCCGCCTTCAAAATCTCCGCCGCCACCCAAGTCTCCGCCGCCTTCAAAATCTCCGCCGCCGCCCAAGTCTCCGCCACCGAATGCTCCGTCACCCAAGTCTCCTCCACCGAATGCACCCAAGTCTTCTCCGCCGAATGCTCCGCCCCCTAGGTCTCCGCCTTCGGATGCTCCGCCTCCCAAGTCTCCACCACTGGATGCTCTGCCTCCGTCGCCGAATGATGTGGGACCATCACCACCTGACTCCCCTTCACCACCTCCAGCACCTCAAGATAACGTTAATGAGACACCAGCTCCCGCACCACCACCAGAAGTATCCGTCGCTCCCCCACCTCCAAATGACAGCTTGACTCCGCCCTCTCCAGCAACCAATCCCGGTGTCCAGCCATGGCCACACAATTTTCCACCACCAAAGCGCCCAACTATATCTACATATGATTGCAAAAGGAAGTGTTATCAGAGGTGTGTGTTCGATCCAAATGAGGAAGAGTGCATGGAGTCATGCATGATGATGTGTTGTGACCACTACGAATGTGTTCCAGTTCCACCCGGACCTTACGGCCTCAACCCAAGAACATGTGTCCCCGGCTACAATTGCCCTTCAAATAAAATAGCTAACCGCGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

364

Amino Acids

39.34

Weight (kDa)

9.14

Isoelectric Point (pI)

91.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 442
AccB1I GGYRCC 3 cut(s) 70, 370, 388
AccII CGCG 1 cut(s) 1086
AclI AACGTT 1 cut(s) 741
AclWI GGATC 2 cut(s) 304, 932
AcoI YGGCCR 1 cut(s) 854
AcsI RAATTY 1 cut(s) 26
AfeI AGCGCT 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 1040
AgsI TTSAA 4 cut(s) 34, 477, 513, 1068
AjnI CCWGG 1 cut(s) 73
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 4 cut(s) 167, 758, 810, 1079
AluI AGCT 4 cut(s) 167, 758, 810, 1079
Alw26I GTCTC 7 cut(s) 471, 504, 540, 570, 624, 654, 743
AlwI GGATC 2 cut(s) 304, 932
Ama87I CYCGRG 1 cut(s) 118
Aor51HI AGCGCT 1 cut(s) 329
AoxI GGCC 2 cut(s) 854, 1024
ApoI RAATTY 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 539, 571
Asp700I GAANNNNTTC 2 cut(s) 29, 999
AspA2I CCTAGG 1 cut(s) 614
AspLEI GCGC 2 cut(s) 330, 882
AspS9I GGNCC 2 cut(s) 692, 1016
AsuC2I CCSGG 4 cut(s) 228, 840, 1014, 1050
AsuHPI GGTGA 4 cut(s) 29, 549, 690, 708
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 2 cut(s) 692, 1016
AvrII CCTAGG 1 cut(s) 614
AxyI CCTNAGG 2 cut(s) 138, 201
BalI TGGCCA 1 cut(s) 856
BanI GGYRCC 3 cut(s) 70, 370, 388
BbsI GAAGAC 2 cut(s) 440, 582
BccI CCATC 1 cut(s) 703
BceAI ACGGC 4 cut(s) 406, 412, 427, 1039
BciT130I CCWGG 1 cut(s) 75
BciVI GTATCC 1 cut(s) 790
BcnI CCSGG 4 cut(s) 228, 840, 1014, 1050
BcoDI GTCTC 7 cut(s) 471, 504, 540, 570, 624, 654, 743
BfaI CTAG 2 cut(s) 254, 615
BfoI RGCGCY 2 cut(s) 331, 883
BfuI GTATCC 1 cut(s) 790
BisI GCNGC 4 cut(s) 488, 506, 524, 527
BlnI CCTAGG 1 cut(s) 614
BlsI GCNGC 4 cut(s) 489, 507, 525, 528
Bme1390I CCNGG 5 cut(s) 75, 228, 840, 1014, 1050
Bme18I GGWCC 2 cut(s) 692, 1016
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 692, 1016
BmiI GGNNCC 4 cut(s) 72, 372, 390, 693
BmrFI CCNGG 5 cut(s) 75, 228, 840, 1014, 1050
BmsI GCATC 2 cut(s) 622, 652
BoxI GACNNNNGTC 1 cut(s) 120
BpiI GAAGAC 2 cut(s) 440, 582
BpmI CTGGAG 2 cut(s) 708, 810
BpuEI CTTGAG 1 cut(s) 717
BpuMI CCSGG 4 cut(s) 228, 840, 1014, 1050
BsaAI YACGTR 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 624
BsaJI CCNNGG 5 cut(s) 74, 404, 614, 851, 1048
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 4 cut(s) 208, 238, 742, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 2 cut(s) 663, 1004
Bse21I CCTNAGG 2 cut(s) 138, 201
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 5 cut(s) 74, 404, 614, 851, 1048
BseGI GGATG 2 cut(s) 637, 667
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 663, 1004
BseRI GAGGAG 1 cut(s) 558
BsgI GTGCAG 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 1086
BshFI GGCC 2 cut(s) 856, 1026
BshNI GGYRCC 3 cut(s) 70, 370, 388
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 6 cut(s) 228, 368, 386, 840, 1014, 1050
BslFI GGGAC 2 cut(s) 705, 1031
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 7 cut(s) 471, 504, 540, 570, 624, 654, 743
BsmFI GGGAC 2 cut(s) 705, 1031
BsmI GAATGC 3 cut(s) 553, 583, 607
BsnI GGCC 2 cut(s) 856, 1026
Bso31I GGTCTC 1 cut(s) 624
BsoBI CYCGRG 1 cut(s) 118
Bsp143I GATC 3 cut(s) 309, 318, 937
Bsp19I CCATGG 1 cut(s) 851
BspANI GGCC 2 cut(s) 856, 1026
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 1086
BspLI GGNNCC 4 cut(s) 72, 372, 390, 693
BspPI GGATC 2 cut(s) 304, 932
BspT107I GGYRCC 3 cut(s) 70, 370, 388
BspTNI GGTCTC 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 2 cut(s) 663, 1004
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 5 cut(s) 74, 404, 614, 851, 1048
BssMI GATC 3 cut(s) 309, 318, 937
BssT1I CCWWGG 3 cut(s) 404, 614, 851
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 17, 459
Bst6I CTCTTC 1 cut(s) 945
BstBAI YACGTR 1 cut(s) 214
BstDEI CTNAG 3 cut(s) 138, 192, 201
BstDSI CCRYGG 1 cut(s) 851
BstF5I GGATG 2 cut(s) 637, 667
BstFNI CGCG 1 cut(s) 1086
BstH2I RGCGCY 2 cut(s) 331, 883
BstHHI GCGC 2 cut(s) 330, 882
BstKTI GATC 3 cut(s) 312, 321, 940
BstMAI GTCTC 7 cut(s) 471, 504, 540, 570, 624, 654, 743
BstMBI GATC 3 cut(s) 309, 318, 937
BstMWI GCNNNNNNNGC 6 cut(s) 89, 205, 334, 448, 676, 1059
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 1044
BstPAI GACNNNNGTC 1 cut(s) 120
BstSCI CCNGG 5 cut(s) 73, 226, 838, 1012, 1048
BstUI CGCG 1 cut(s) 1086
BstV2I GAAGAC 2 cut(s) 440, 582
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
Bsu36I CCTNAGG 2 cut(s) 138, 201
BsuI GTATCC 1 cut(s) 790
BsuRI GGCC 2 cut(s) 856, 1026
BtgI CCRYGG 1 cut(s) 851
BtsCI GGATG 2 cut(s) 637, 667
BtsIMutI CAGTG 1 cut(s) 656
CfoI GCGC 2 cut(s) 330, 882
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 692, 1016
CviAII CATG 5 cut(s) 852, 958, 966, 970, 1041
DdeI CTNAG 3 cut(s) 138, 192, 201
DpnI GATC 3 cut(s) 311, 320, 939
DpnII GATC 3 cut(s) 309, 318, 937
DrdI GACNNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 442
EaeI YGGCCR 1 cut(s) 854
Eam1104I CTCTTC 1 cut(s) 945
EarI CTCTTC 1 cut(s) 945
Eco130I CCWWGG 3 cut(s) 404, 614, 851
Eco31I GGTCTC 1 cut(s) 624
Eco47I GGWCC 2 cut(s) 692, 1016
Eco47III AGCGCT 1 cut(s) 329
Eco81I CCTNAGG 2 cut(s) 138, 201
Eco88I CYCGRG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 3 cut(s) 404, 614, 851
EcoT22I ATGCAT 1 cut(s) 971
ErhI CCWWGG 3 cut(s) 404, 614, 851
FaeI CATG 5 cut(s) 855, 961, 969, 973, 1044
FaiI YATR 8 cut(s) 853, 890, 898, 900, 959, 967, 971, 1042
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 2 cut(s) 705, 1031
FatI CATG 5 cut(s) 851, 957, 965, 969, 1040
FauI CCCGC 1 cut(s) 769
FauNDI CATATG 1 cut(s) 898
Fnu4HI GCNGC 4 cut(s) 488, 506, 524, 527
FokI GGATG 2 cut(s) 644, 674
Fsp4HI GCNGC 4 cut(s) 488, 506, 524, 527
FspBI CTAG 2 cut(s) 254, 615
GlaI GCGC 2 cut(s) 329, 881
GluI GCNGC 4 cut(s) 488, 506, 524, 527
GsuI CTGGAG 2 cut(s) 708, 810
HaeII RGCGCY 2 cut(s) 331, 883
HaeIII GGCC 2 cut(s) 856, 1026
HapII CCGG 6 cut(s) 228, 368, 386, 840, 1014, 1050
HhaI GCGC 2 cut(s) 330, 882
Hin1II CATG 5 cut(s) 855, 961, 969, 973, 1044
Hin6I GCGC 2 cut(s) 328, 880
HinP1I GCGC 2 cut(s) 328, 880
HinfI GANTC 7 cut(s) 116, 121, 241, 283, 707, 814, 962
HpaII CCGG 6 cut(s) 228, 368, 386, 840, 1014, 1050
HphI GGTGA 4 cut(s) 29, 549, 690, 708
Hpy166II GTNNAC 3 cut(s) 13, 259, 268
Hpy188I TCNGA 2 cut(s) 631, 924
Hpy188III TCNNGA 2 cut(s) 322, 734
Hpy8I GTNNAC 3 cut(s) 13, 259, 268
Hpy99I CGWCG 5 cut(s) 427, 433, 463, 679, 788
HpyAV CCTTC 6 cut(s) 73, 483, 519, 636, 723, 1074
HpyCH4III ACNGT 2 cut(s) 17, 459
HpyCH4IV ACGT 3 cut(s) 213, 234, 741
HpyCH4V TGCA 7 cut(s) 4, 208, 238, 581, 906, 957, 969
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 205, 334, 448, 676, 1059
HpyF3I CTNAG 3 cut(s) 138, 192, 201
HpySE526I ACGT 3 cut(s) 213, 234, 741
Hsp92II CATG 5 cut(s) 855, 961, 969, 973, 1044
HspAI GCGC 2 cut(s) 328, 880
Kzo9I GATC 3 cut(s) 309, 318, 937
LmnI GCTCC 5 cut(s) 556, 610, 640, 763, 793
LweI GCATC 2 cut(s) 622, 652
MaeI CTAG 2 cut(s) 254, 615
MaeII ACGT 3 cut(s) 213, 234, 741
MaeIII GTNAC 6 cut(s) 17, 122, 214, 302, 555, 983
MalI GATC 3 cut(s) 311, 320, 939
MboI GATC 3 cut(s) 309, 318, 937
MboII GAAGA 4 cut(s) 292, 445, 582, 962
MfeI CAATTG 1 cut(s) 1057
MflI RGATCY 1 cut(s) 309
MlsI TGGCCA 1 cut(s) 856
MluCI AATT 4 cut(s) 26, 37, 862, 1057
MluNI TGGCCA 1 cut(s) 856
MlyI GAGTC 6 cut(s) 110, 130, 235, 701, 808, 971
Mox20I TGGCCA 1 cut(s) 856
Mph1103I ATGCAT 1 cut(s) 971
MroXI GAANNNNTTC 2 cut(s) 29, 999
MscI TGGCCA 1 cut(s) 856
MseI TTAA 1 cut(s) 744
MslI CAYNNNNRTG 1 cut(s) 974
Msp20I TGGCCA 1 cut(s) 856
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 6 cut(s) 228, 368, 386, 840, 1014, 1050
MspR9I CCNGG 5 cut(s) 75, 228, 840, 1014, 1050
MunI CAATTG 1 cut(s) 1057
Mva1269I GAATGC 3 cut(s) 553, 583, 607
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 1086
MwoI GCNNNNNNNGC 6 cut(s) 89, 205, 334, 448, 676, 1059
NciI CCSGG 4 cut(s) 228, 840, 1014, 1050
NcoI CCATGG 1 cut(s) 851
NdeI CATATG 1 cut(s) 898
NdeII GATC 3 cut(s) 309, 318, 937
NlaIII CATG 5 cut(s) 855, 961, 969, 973, 1044
NlaIV GGNNCC 4 cut(s) 72, 372, 390, 693
NmuCI GTSAC 5 cut(s) 17, 122, 214, 555, 983
NsiI ATGCAT 1 cut(s) 971
NspI RCATGY 1 cut(s) 1044
PaeR7I CTCGAG 1 cut(s) 118
PciI ACATGT 1 cut(s) 1040
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 389
PctI GAATGC 3 cut(s) 553, 583, 607
PdmI GAANNNNTTC 2 cut(s) 29, 999
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 4 cut(s) 489, 507, 525, 528
PleI GAGTC 6 cut(s) 110, 129, 235, 701, 808, 970
PpsI GAGTC 6 cut(s) 110, 129, 235, 701, 808, 970
Ppu21I YACGTR 1 cut(s) 214
PscI ACATGT 1 cut(s) 1040
PshAI GACNNNNGTC 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 4 cut(s) 72, 372, 390, 693
PspPI GGNCC 2 cut(s) 692, 1016
PspXI VCTCGAGB 1 cut(s) 118
PsuI RGATCY 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 974
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 4 cut(s) 488, 506, 524, 527
Sau3AI GATC 3 cut(s) 309, 318, 937
Sau96I GGNCC 2 cut(s) 692, 1016
SchI GAGTC 6 cut(s) 110, 130, 235, 701, 808, 971
ScrFI CCNGG 5 cut(s) 75, 228, 840, 1014, 1050
SfaNI GCATC 2 cut(s) 622, 652
Sfr274I CTCGAG 1 cut(s) 118
SgrAI CRCCGGYG 1 cut(s) 385
SinI GGWCC 2 cut(s) 692, 1016
SlaI CTCGAG 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 2 cut(s) 118, 732
SmoI CTYRAG 2 cut(s) 118, 732
Sse9I AATT 4 cut(s) 26, 37, 862, 1057
SspMI CTAG 2 cut(s) 254, 615
StyD4I CCNGG 5 cut(s) 73, 226, 838, 1012, 1048
StyI CCWWGG 3 cut(s) 404, 614, 851
TaaI ACNGT 2 cut(s) 17, 459
TaiI ACGT 3 cut(s) 216, 237, 744
TaqI TCGA 6 cut(s) 119, 128, 323, 431, 461, 936
TasI AATT 4 cut(s) 26, 37, 862, 1057
TauI GCSGC 4 cut(s) 490, 508, 526, 529
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 5 cut(s) 17, 122, 214, 555, 983
Tsp45I GTSAC 5 cut(s) 17, 122, 214, 555, 983
TspGWI ACGGA 3 cut(s) 543, 663, 772
TspRI CASTG 1 cut(s) 663
VpaK11BI GGWCC 2 cut(s) 692, 1016
XapI RAATTY 1 cut(s) 26
XceI RCATGY 1 cut(s) 1044
XhoI CTCGAG 1 cut(s) 118
XmaJI CCTAGG 1 cut(s) 614
XmnI GAANNNNTTC 2 cut(s) 29, 999
XspI CTAG 2 cut(s) 254, 615
Zsp2I ATGCAT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.