RLG00000025943

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000987
Physical Location & Seq
Forward (+)
49367387 .. 49369885
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025943

Sequence Viewer

Length: 1455 bp
ATGGCAGCCTTTGAATTCCGATCACCATATTTACTCTCTCTAACCTTTCTCCTCCTCCTTCTTCTCGTCCTTTCCTTCTCACCCTTTAACAAAAGCAGTTTCAGTCTCATCAATCTTTCTTCTTCTTCTTCTAAAACCCCATCTGTTCCTCTACACAGTAATCTTACCAGTTCAAACCAATATGTCTCACCCTCACCTTCACGGTCACAGTCACGGTCACGGTCACGGTCACAGCCACCCTTTCCTTCTCCTACTTCCATTGTGGCAGACCATGTCAAAGAAAAGAGTAGTACAAGCCAGATTGAGGAACAATTGGCCAGAGCAAGAGCAGCCATCCACAAAGCAGTTCTTACAAAGAACTATTCATCTGATAGACAAGAGATCTACATCCCCAGAGGAAGTGTGTACAGAAATCCCTATGCATTTCATCAGAGTCACATAGAGATGGTCAAAAGATTCAAGATATGGGCATACAAGGAAGGGGAGATACCCATGTTCCATAATGGACCAATGTCGTACATCTACTCCATAGAAGGCCAGTTCATGGATGAGCTGGATAGTAGTGGGAAAAGTCCATTTCTGGCTCGCCATCTTCATGAGGCACATTCATTCTTCGTACCAGTAAGTGTGAAAAGGATTGCTGATTTCTTGTATGATCGGCCTAAACCGCACACTTTTCACGGTCGATTGGTTCGTATCGTCACTGACTATATCAATGTGGTAGCTCAAAAATATCCCTACTGGAATAGGAGCGAGGGAGCTGACCATTTTATGGTCTCTTGTCATGATTGGGCACCAGAAATAATAAATGATGATCTTAAGTTCTACAAGAATTTCATAAGAGTACTTTGCAATGCTAACATATCCGAAGGATTCCAGCCTGAGAGAGACGTCTCGTTGCCAGAATATAACTTGGCCAGCGGCACTCTTGGTCCATCACGCCTTGACTCACACCCTGATGAGCGTCCTATCCTGGCCTTCTTTGCGGGCGGTGCTCATGGTGACATAAGGAAGTTTTTATTTGAGCATTGGAGGGACAAAGATGAGGAAATCCAAGTCCATGAGTATCTTCCAAAGGGTCAAAATTATCACCAAATAATGGGACGAAGTAAGTTTTGCTTGTGTCCAAGTGGGACTGAAGTTGCTAGTCCTAGAGTGGTTGAAGCAATGTATGCAGGGTGTGTTCCGGTGCTCATTTCTGATTATTATGCATTACCCTTTGGCGATGTTCTTGATTGGAGCAAGTTTACAATAGAAATTCCACCAAAGAGAATACCAGAAATTAAGAGGATATTGAAAGCTGTTTCGCATGCAGAATACTTGAAATTGCAGAAGAGGGTGATGAAAGTGAGAAGGCATTTTGAGCTGAACCGGCCTGCTAAGCCATTTGATGTGTTTCACATGGTGCTTCACTCAATTTGGCTGAGAAGGCTAAACATTAGACTACCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

485

Amino Acids

55.79

Weight (kDa)

9.28

Isoelectric Point (pI)

66.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 135 - 434 9.9e-59 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 894
AccB1I GGYRCC 1 cut(s) 793
AccB7I CCANNNNNTGG 3 cut(s) 544, 772, 1099
AciI CCGC 4 cut(s) 668, 921, 986, 990
AcoI YGGCCR 2 cut(s) 315, 915
AcsI RAATTY 3 cut(s) 14, 832, 1257
AcuI CTGAAG 1 cut(s) 1158
AcyI GRCGYC 1 cut(s) 891
AdeI CACNNNGTG 1 cut(s) 1405
AfaI GTAC 5 cut(s) 292, 407, 518, 618, 846
AfiI CCNNNNNNNGG 4 cut(s) 304, 544, 772, 1099
AflII CTTAAG 1 cut(s) 818
AgsI TTSAA 6 cut(s) 14, 174, 460, 1163, 1297, 1324
AjnI CCWGG 1 cut(s) 972
AluBI AGCT 5 cut(s) 553, 725, 761, 1301, 1366
AluI AGCT 5 cut(s) 553, 725, 761, 1301, 1366
Alw21I GWGCWC 2 cut(s) 997, 1194
Alw26I GTCTC 5 cut(s) 110, 190, 781, 882, 898
AoxI GGCC 6 cut(s) 315, 535, 659, 915, 975, 1373
ApeKI GCWGC 2 cut(s) 5, 329
ApoI RAATTY 3 cut(s) 14, 832, 1257
AspS9I GGNCC 2 cut(s) 506, 932
AsuHPI GGTGA 7 cut(s) 15, 72, 180, 186, 1013, 1082, 1351
AvaII GGWCC 2 cut(s) 506, 932
BaeGI GKGCMC 1 cut(s) 796
BaeI ACNNNNGTAYC 2 cut(s) 479, 512
BalI TGGCCA 2 cut(s) 317, 917
BanI GGYRCC 1 cut(s) 793
BarI GAAGNNNNNNTAC 2 cut(s) 471, 503
Bbv12I GWGCWC 2 cut(s) 997, 1194
BbvI GCAGC 2 cut(s) 17, 341
BccI CCATC 5 cut(s) 148, 341, 439, 597, 943
BciT130I CCWGG 1 cut(s) 974
BcoDI GTCTC 5 cut(s) 110, 190, 781, 882, 898
BfaI CTAG 2 cut(s) 1146, 1152
BfrI CTTAAG 1 cut(s) 818
BglII AGATCT 1 cut(s) 381
BisI GCNGC 3 cut(s) 6, 330, 922
BlpI GCTNAGC 1 cut(s) 1380
BlsI GCNGC 3 cut(s) 7, 331, 923
BmcAI AGTACT 1 cut(s) 846
Bme1390I CCNGG 1 cut(s) 974
Bme18I GGWCC 2 cut(s) 506, 932
BmgT120I GGNCC 2 cut(s) 506, 932
BmiI GGNNCC 1 cut(s) 795
BmrFI CCNGG 1 cut(s) 974
BoxI GACNNNNGTC 1 cut(s) 511
Bpu1102I GCTNAGC 1 cut(s) 1380
BsaBI GATNNNNATC 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 891
BsaI GGTCTC 1 cut(s) 781
BsaWI WCCGGW 1 cut(s) 1186
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 544, 772, 1099
Bse118I RCCGGY 1 cut(s) 1371
Bse1I ACTGG 4 cut(s) 168, 538, 620, 746
Bse3DI GCAATG 2 cut(s) 859, 1173
Bse8I GATNNNNATC 1 cut(s) 386
BseBI CCWGG 1 cut(s) 974
BseGI GGATG 3 cut(s) 333, 387, 553
BseJI GATNNNNATC 1 cut(s) 386
BseLI CCNNNNNNNGG 4 cut(s) 304, 544, 772, 1099
BseMI GCAATG 2 cut(s) 859, 1173
BseMII CTCAG 2 cut(s) 873, 1415
BseNI ACTGG 4 cut(s) 168, 538, 620, 746
BseRI GAGGAG 2 cut(s) 41, 44
BseSI GKGCMC 1 cut(s) 796
BseXI GCAGC 2 cut(s) 17, 341
Bsh1285I CGRYCG 1 cut(s) 685
BshFI GGCC 6 cut(s) 317, 537, 661, 917, 977, 1375
BshNI GGYRCC 1 cut(s) 793
BsiEI CGRYCG 1 cut(s) 685
BsiHKAI GWGCWC 2 cut(s) 997, 1194
BsiSI CCGG 2 cut(s) 1187, 1372
BslFI GGGAC 3 cut(s) 1049, 1116, 1147
BslI CCNNNNNNNGG 4 cut(s) 304, 544, 772, 1099
BsmAI GTCTC 5 cut(s) 110, 190, 781, 882, 898
BsmBI CGTCTC 2 cut(s) 882, 898
BsmFI GGGAC 3 cut(s) 1049, 1116, 1147
BsnI GGCC 6 cut(s) 317, 537, 661, 917, 977, 1375
Bso31I GGTCTC 1 cut(s) 781
Bsp1286I GDGCHC 3 cut(s) 796, 997, 1194
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 4 cut(s) 20, 381, 655, 814
Bsp1720I GCTNAGC 1 cut(s) 1380
BspACI CCGC 4 cut(s) 668, 921, 986, 990
BspANI GGCC 6 cut(s) 317, 537, 661, 917, 977, 1375
BspCNI CTCAG 2 cut(s) 874, 1416
BspHI TCATGA 2 cut(s) 595, 784
BspLI GGNNCC 1 cut(s) 795
BspT107I GGYRCC 1 cut(s) 793
BspTI CTTAAG 1 cut(s) 818
BspTNI GGTCTC 1 cut(s) 781
BsrDI GCAATG 2 cut(s) 859, 1173
BsrFI RCCGGY 1 cut(s) 1371
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 4 cut(s) 168, 538, 620, 746
BssAI RCCGGY 1 cut(s) 1371
BssMI GATC 4 cut(s) 20, 381, 655, 814
BssNI GRCGYC 1 cut(s) 891
Bst2UI CCWGG 1 cut(s) 974
Bst4CI ACNGT 7 cut(s) 158, 204, 210, 216, 222, 228, 683
Bst6I CTCTTC 1 cut(s) 1328
BstACI GRCGYC 1 cut(s) 891
BstAFI CTTAAG 1 cut(s) 818
BstAPI GCANNNNNTGC 1 cut(s) 1172
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 5 cut(s) 586, 919, 988, 1311, 1377
BstDEI CTNAG 3 cut(s) 882, 1380, 1424
BstF5I GGATG 3 cut(s) 333, 387, 553
BstKTI GATC 4 cut(s) 23, 384, 658, 817
BstMAI GTCTC 5 cut(s) 110, 190, 781, 882, 898
BstMBI GATC 4 cut(s) 20, 381, 655, 814
BstMCI CGRYCG 1 cut(s) 685
BstMWI GCNNNNNNNGC 9 cut(s) 329, 667, 983, 992, 1172, 1363, 1372, 1381, 1429
BstNI CCWGG 1 cut(s) 974
BstNSI RCATGY 1 cut(s) 1313
BstPAI GACNNNNGTC 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 972
BstSLI GKGCMC 1 cut(s) 796
BstV1I GCAGC 2 cut(s) 17, 341
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 6 cut(s) 317, 537, 661, 917, 977, 1375
BtgZI GCGATG 1 cut(s) 1239
BtsCI GGATG 3 cut(s) 333, 387, 553
BtsIMutI CAGTG 1 cut(s) 702
Cac8I GCNNGC 5 cut(s) 586, 919, 988, 1311, 1377
CciI TCATGA 2 cut(s) 595, 784
Cfr10I RCCGGY 1 cut(s) 1371
Cfr13I GGNCC 2 cut(s) 506, 932
CseI GACGC 1 cut(s) 953
Csp6I GTAC 5 cut(s) 291, 406, 517, 617, 845
CviAII CATG 9 cut(s) 272, 493, 544, 596, 785, 998, 1061, 1310, 1402
CviQI GTAC 5 cut(s) 291, 406, 517, 617, 845
DdeI CTNAG 3 cut(s) 882, 1380, 1424
DpnI GATC 4 cut(s) 22, 383, 657, 816
DpnII GATC 4 cut(s) 20, 381, 655, 814
DraIII CACNNNGTG 1 cut(s) 1405
EaeI YGGCCR 2 cut(s) 315, 915
Eam1104I CTCTTC 1 cut(s) 1328
EarI CTCTTC 1 cut(s) 1328
Eco31I GGTCTC 1 cut(s) 781
Eco47I GGWCC 2 cut(s) 506, 932
Eco57I CTGAAG 1 cut(s) 1158
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 972
EcoT22I ATGCAT 2 cut(s) 424, 1213
Esp3I CGTCTC 2 cut(s) 882, 898
FaeI CATG 9 cut(s) 275, 496, 547, 599, 788, 1001, 1064, 1313, 1405
FalI AAGNNNNNCTT 4 cut(s) 333, 365, 1103, 1135
FaqI GGGAC 3 cut(s) 1049, 1116, 1147
FatI CATG 9 cut(s) 271, 492, 543, 595, 784, 997, 1060, 1309, 1401
FauI CCCGC 1 cut(s) 979
Fnu4HI GCNGC 3 cut(s) 6, 330, 922
FokI GGATG 3 cut(s) 320, 374, 560
Fsp4HI GCNGC 3 cut(s) 6, 330, 922
FspBI CTAG 2 cut(s) 1146, 1152
GluI GCNGC 3 cut(s) 6, 330, 922
HaeIII GGCC 6 cut(s) 317, 537, 661, 917, 977, 1375
HapII CCGG 2 cut(s) 1187, 1372
HgaI GACGC 1 cut(s) 953
Hin1I GRCGYC 1 cut(s) 891
Hin1II CATG 9 cut(s) 275, 496, 547, 599, 788, 1001, 1064, 1313, 1405
HinfI GANTC 4 cut(s) 433, 456, 873, 947
HpaII CCGG 2 cut(s) 1187, 1372
HphI GGTGA 7 cut(s) 15, 72, 180, 186, 1013, 1082, 1351
Hpy166II GTNNAC 2 cut(s) 406, 1248
Hpy188I TCNGA 5 cut(s) 20, 370, 432, 868, 1201
Hpy188III TCNNGA 4 cut(s) 460, 596, 785, 1232
Hpy8I GTNNAC 2 cut(s) 406, 1248
HpyCH4III ACNGT 7 cut(s) 158, 204, 210, 216, 222, 228, 683
HpyCH4IV ACGT 1 cut(s) 891
HpyCH4V TGCA 6 cut(s) 422, 852, 1175, 1211, 1313, 1330
HpyF10VI GCNNNNNNNGC 9 cut(s) 329, 667, 983, 992, 1172, 1363, 1372, 1381, 1429
HpyF3I CTNAG 3 cut(s) 882, 1380, 1424
HpySE526I ACGT 1 cut(s) 891
Hsp92I GRCGYC 1 cut(s) 891
Hsp92II CATG 9 cut(s) 275, 496, 547, 599, 788, 1001, 1064, 1313, 1405
Kzo9I GATC 4 cut(s) 20, 381, 655, 814
LmnI GCTCC 3 cut(s) 750, 758, 1239
Lsp1109I GCAGC 2 cut(s) 17, 341
MaeI CTAG 2 cut(s) 1146, 1152
MaeII ACGT 1 cut(s) 891
MaeIII GTNAC 8 cut(s) 204, 210, 216, 222, 228, 434, 700, 1001
MalI GATC 4 cut(s) 22, 383, 657, 816
MboI GATC 4 cut(s) 20, 381, 655, 814
MboII GAAGA 9 cut(s) 53, 111, 114, 117, 120, 584, 604, 1061, 1345
MfeI CAATTG 1 cut(s) 311
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 3 cut(s) 796, 997, 1194
MlsI TGGCCA 2 cut(s) 317, 917
MluCI AATT 8 cut(s) 14, 311, 832, 1084, 1257, 1281, 1325, 1416
MluNI TGGCCA 2 cut(s) 317, 917
MlyI GAGTC 2 cut(s) 442, 941
Mox20I TGGCCA 2 cut(s) 317, 917
Mph1103I ATGCAT 2 cut(s) 424, 1213
MscI TGGCCA 2 cut(s) 317, 917
MseI TTAA 4 cut(s) 87, 819, 1284, 1453
MslI CAYNNNNRTG 3 cut(s) 443, 594, 957
Msp20I TGGCCA 2 cut(s) 317, 917
MspA1I CMGCKG 1 cut(s) 921
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 2 cut(s) 1187, 1372
MspR9I CCNGG 1 cut(s) 974
MunI CAATTG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 974
MwoI GCNNNNNNNGC 9 cut(s) 329, 667, 983, 992, 1172, 1363, 1372, 1381, 1429
NdeII GATC 4 cut(s) 20, 381, 655, 814
NlaIII CATG 9 cut(s) 275, 496, 547, 599, 788, 1001, 1064, 1313, 1405
NlaIV GGNNCC 1 cut(s) 795
NmuCI GTSAC 8 cut(s) 204, 210, 216, 222, 228, 434, 700, 1001
NsiI ATGCAT 2 cut(s) 424, 1213
NspI RCATGY 1 cut(s) 1313
PaeI GCATGC 1 cut(s) 1313
PagI TCATGA 2 cut(s) 595, 784
PcsI WCGNNNNNNNCGW 1 cut(s) 691
PfeI GAWTC 2 cut(s) 456, 873
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 3 cut(s) 544, 772, 1099
PkrI GCNGC 3 cut(s) 7, 331, 923
PleI GAGTC 2 cut(s) 441, 941
PpsI GAGTC 2 cut(s) 441, 941
PshAI GACNNNNGTC 1 cut(s) 511
Psp6I CCWGG 1 cut(s) 972
PspGI CCWGG 1 cut(s) 972
PspN4I GGNNCC 1 cut(s) 795
PspPI GGNCC 2 cut(s) 506, 932
PsuI RGATCY 1 cut(s) 381
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 5 cut(s) 292, 407, 518, 618, 846
RsaNI GTAC 5 cut(s) 291, 406, 517, 617, 845
RseI CAYNNNNRTG 3 cut(s) 443, 594, 957
SaqAI TTAA 4 cut(s) 87, 819, 1284, 1453
SatI GCNGC 3 cut(s) 6, 330, 922
Sau3AI GATC 4 cut(s) 20, 381, 655, 814
Sau96I GGNCC 2 cut(s) 506, 932
ScaI AGTACT 1 cut(s) 846
SchI GAGTC 2 cut(s) 442, 941
ScrFI CCNGG 1 cut(s) 974
SduI GDGCHC 3 cut(s) 796, 997, 1194
SetI ASST 8 cut(s) 47, 199, 555, 727, 763, 894, 1303, 1368
SinI GGWCC 2 cut(s) 506, 932
SmiMI CAYNNNNRTG 3 cut(s) 443, 594, 957
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SphI GCATGC 1 cut(s) 1313
Sse9I AATT 8 cut(s) 14, 311, 832, 1084, 1257, 1281, 1325, 1416
SsiI CCGC 4 cut(s) 668, 921, 986, 990
SspMI CTAG 2 cut(s) 1146, 1152
StyD4I CCNGG 1 cut(s) 972
TaaI ACNGT 7 cut(s) 158, 204, 210, 216, 222, 228, 683
TaiI ACGT 1 cut(s) 894
TaqI TCGA 1 cut(s) 685
TasI AATT 8 cut(s) 14, 311, 832, 1084, 1257, 1281, 1325, 1416
TatI WGTACW 3 cut(s) 290, 405, 844
TauI GCSGC 1 cut(s) 924
TfiI GAWTC 2 cut(s) 456, 873
Tru1I TTAA 4 cut(s) 87, 819, 1284, 1453
Tru9I TTAA 4 cut(s) 87, 819, 1284, 1453
TscAI CASTG 1 cut(s) 709
TseFI GTSAC 8 cut(s) 204, 210, 216, 222, 228, 434, 700, 1001
TseI GCWGC 2 cut(s) 5, 329
Tsp45I GTSAC 8 cut(s) 204, 210, 216, 222, 228, 434, 700, 1001
TspDTI ATGAA 7 cut(s) 354, 416, 532, 584, 597, 826, 1358
TspRI CASTG 1 cut(s) 709
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 3 cut(s) 544, 772, 1099
Vha464I CTTAAG 1 cut(s) 818
VpaK11BI GGWCC 2 cut(s) 506, 932
XapI RAATTY 3 cut(s) 14, 832, 1257
XceI RCATGY 1 cut(s) 1313
XspI CTAG 2 cut(s) 1146, 1152
ZraI GACGTC 1 cut(s) 892
ZrmI AGTACT 1 cut(s) 846
Zsp2I ATGCAT 2 cut(s) 424, 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.