FvH4_6g00700

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000987
Physical Location & Seq
Reverse (-)
399771 .. 405891
6121 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00700.t1

Sequence Viewer

Length: 1428 bp
ATGGCAGCCTTTGAGTTCCGATCACCATATTTGCTCTCTCTAACCATTCTCCTCCTTCTTCTTCTCGTGCTTTCCTTCTCCCCCTTTAACAAAACCAGTTTCAGTCTCATCAATCTTTCTTCTTCTGAAACCCAACATGTTCCTCTAAACAGTACTCATCTTAACACTTCAACCCAATATGTCTCACCCTCACAGCCACAGCCACCACCCTTACCTTCTCCTCCTACTTCCATTGTTGCAGACCATGTCAAAAAAAGAAGCAATACAAACAAGATTGAGGAACAATTGGCCAGAGCAAGAGCAGCTATTCACAAAGCAGTTCTTACAAAGAACTATACATCTGATAGACAAGAGATTTACATCCCCAGAGGAAGTGTGTACAGAAATCCCTATTCATTTCATCAGAGTCACATAGAGATGGTAAAGAGATTCAAGATATGGGCATACAAGGAAGGGGAGCTACCAATGTTCCATAATGGACCAATGTCGTACATCTACTCCATAGAAGGCCAGTTCATGGATGAGCTGGATAGTAGTGGGAAGAGTCCATTTCTGGCTCGACATCTTCATGAGGCACATTCGTTCTTTGTACCAGTAAGTGTGAAAAGGATTGCTGATTTCTTGTATGATCGGCCTAAACCTTACAGTTTTCACGGTCGATTGGTTCGTATTGTCACCGACTATATCAATGTGGTAGCTCGAAAATATCCCTACTGGAATAGGAGTGAGGGAGCTGACCATTTTATGGTCTCTTGTCATGATTGGGCACCAGAAATAATAAATGATGATCTTAAGTTCTACAAGAACTTCATAAGAGTGCTTTGCAATGCTAACATATCCGAAGGATTCCAGCCAGGGAGAGACGTCTCGCTGCCAGAATATAACTTAGCCAGTGGCACACTTGGACCATCACGCCTCGACTCACATCCTGATGAGCGTCCTATCCTGGCCTTCTTTGCTGGCGGTGCTCATGGCGACATAAGGAAGTTTTTATTTGAGCATTGGAGGGACAAAGATGAGGAAATCCAAGTCCATGAGTATCTTCCAAAGGGTCAAAATTATCACCAAATTATGGGGCAAACCAAGTTTTGCTTGTGTCCAAGTGGGACTGAAGTTGCTAGTCCTAGAGTGGTTGAAGCAATGTATGCAGGATGTGTTCCGGTGCTCATTTCTGATTATTATGCGCTACCCTTTGCCGATGTTCTTGATTGGAGCAAGTTTACAATAGAAATTCCACCAAAGAGAATACCGGAAATCAAGACGATATTGAAAGCTGTTTCTCATACAGAATACTTGAAATTGCAGAAGAGGGTGATGCAAGTGAGAAGGCATTTTGAGCTGAACCGGCCTGCCCAGCCATTTGATGTGTTTCATATGGTGCTTCACTCAATTTGGCTGAGGAGGCTAAACATTAGACTACCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

476

Amino Acids

54.86

Weight (kDa)

8.93

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 127 - 425 2.7e-58 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 867
AccB1I GGYRCC 1 cut(s) 766
AccB7I CCANNNNNTGG 3 cut(s) 517, 745, 1072
AciI CCGC 1 cut(s) 963
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 1230
AcuI CTGAAG 1 cut(s) 1131
AcyI GRCGYC 1 cut(s) 864
AfaI GTAC 4 cut(s) 154, 380, 491, 591
AfiI CCNNNNNNNGG 3 cut(s) 517, 745, 1072
AflII CTTAAG 1 cut(s) 791
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 5 cut(s) 171, 433, 1136, 1270, 1297
AjnI CCWGG 2 cut(s) 853, 945
AluBI AGCT 7 cut(s) 305, 460, 526, 698, 734, 1274, 1339
AluI AGCT 7 cut(s) 305, 460, 526, 698, 734, 1274, 1339
Alw21I GWGCWC 2 cut(s) 970, 1167
Alw26I GTCTC 5 cut(s) 110, 187, 754, 855, 871
AoxI GGCC 5 cut(s) 288, 508, 632, 948, 1346
ApeKI GCWGC 3 cut(s) 5, 302, 871
ApoI RAATTY 1 cut(s) 1230
AspLEI GCGC 1 cut(s) 1186
AspS9I GGNCC 2 cut(s) 479, 905
AsuHPI GGTGA 5 cut(s) 15, 177, 667, 1055, 1324
AvaII GGWCC 2 cut(s) 479, 905
BaeGI GKGCMC 1 cut(s) 769
BalI TGGCCA 1 cut(s) 290
BanI GGYRCC 1 cut(s) 766
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
BauI CACGAG 1 cut(s) 65
Bbv12I GWGCWC 2 cut(s) 970, 1167
BbvCI CCTCAGC 1 cut(s) 1397
BbvI GCAGC 3 cut(s) 17, 314, 858
BccI CCATC 2 cut(s) 412, 916
BciT130I CCWGG 2 cut(s) 855, 947
BcoDI GTCTC 5 cut(s) 110, 187, 754, 855, 871
BfaI CTAG 2 cut(s) 1119, 1125
BfrI CTTAAG 1 cut(s) 791
BisI GCNGC 3 cut(s) 6, 303, 872
BlsI GCNGC 3 cut(s) 7, 304, 873
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 855, 947
Bme18I GGWCC 2 cut(s) 479, 905
BmgT120I GGNCC 2 cut(s) 479, 905
BmiI GGNNCC 1 cut(s) 768
BmrFI CCNGG 2 cut(s) 855, 947
BmsI GCATC 1 cut(s) 1305
BoxI GACNNNNGTC 1 cut(s) 484
Bpu10I CCTNAGC 1 cut(s) 1397
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 864
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 1 cut(s) 854
BsaWI WCCGGW 2 cut(s) 1159, 1249
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 3 cut(s) 517, 745, 1072
Bse118I RCCGGY 1 cut(s) 1344
Bse1I ACTGG 5 cut(s) 96, 511, 593, 719, 891
Bse3DI GCAATG 2 cut(s) 832, 1146
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 2 cut(s) 855, 947
BseDI CCNNGG 1 cut(s) 854
BseGI GGATG 4 cut(s) 360, 526, 925, 1157
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 3 cut(s) 517, 745, 1072
BseMI GCAATG 2 cut(s) 832, 1146
BseMII CTCAG 1 cut(s) 1388
BseNI ACTGG 5 cut(s) 96, 511, 593, 719, 891
BseRI GAGGAG 3 cut(s) 41, 210, 1414
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 3 cut(s) 17, 314, 858
BseYI CCCAGC 1 cut(s) 1353
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 5 cut(s) 290, 510, 634, 950, 1348
BshNI GGYRCC 1 cut(s) 766
BsiEI CGRYCG 1 cut(s) 658
BsiHKAI GWGCWC 2 cut(s) 970, 1167
BsiSI CCGG 3 cut(s) 1160, 1250, 1345
BslFI GGGAC 2 cut(s) 1022, 1120
BslI CCNNNNNNNGG 3 cut(s) 517, 745, 1072
BsmAI GTCTC 5 cut(s) 110, 187, 754, 855, 871
BsmBI CGTCTC 2 cut(s) 855, 871
BsmFI GGGAC 2 cut(s) 1022, 1120
BsnI GGCC 5 cut(s) 290, 510, 634, 950, 1348
Bso31I GGTCTC 1 cut(s) 754
Bsp1286I GDGCHC 3 cut(s) 769, 970, 1167
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 3 cut(s) 20, 628, 787
BspACI CCGC 1 cut(s) 963
BspANI GGCC 5 cut(s) 290, 510, 634, 950, 1348
BspCNI CTCAG 1 cut(s) 1389
BspHI TCATGA 2 cut(s) 568, 757
BspLI GGNNCC 1 cut(s) 768
BspT107I GGYRCC 1 cut(s) 766
BspTI CTTAAG 1 cut(s) 791
BspTNI GGTCTC 1 cut(s) 754
BsrDI GCAATG 2 cut(s) 832, 1146
BsrFI RCCGGY 1 cut(s) 1344
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 5 cut(s) 96, 511, 593, 719, 891
BssAI RCCGGY 1 cut(s) 1344
BssECI CCNNGG 1 cut(s) 854
BssMI GATC 3 cut(s) 20, 628, 787
BssNI GRCGYC 1 cut(s) 864
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 855, 947
Bst4CI ACNGT 3 cut(s) 152, 647, 656
Bst6I CTCTTC 2 cut(s) 536, 1301
BstACI GRCGYC 1 cut(s) 864
BstAFI CTTAAG 1 cut(s) 791
BstAPI GCANNNNNTGC 1 cut(s) 1145
BstAUI TGTACA 1 cut(s) 378
BstC8I GCNNGC 2 cut(s) 961, 1350
BstDEI CTNAG 2 cut(s) 886, 1397
BstF5I GGATG 4 cut(s) 360, 526, 925, 1157
BstHHI GCGC 1 cut(s) 1186
BstKTI GATC 3 cut(s) 23, 631, 790
BstMAI GTCTC 5 cut(s) 110, 187, 754, 855, 871
BstMBI GATC 3 cut(s) 20, 628, 787
BstMCI CGRYCG 1 cut(s) 658
BstMWI GCNNNNNNNGC 8 cut(s) 302, 956, 965, 1145, 1336, 1345, 1354, 1402
BstNI CCWGG 2 cut(s) 855, 947
BstNSI RCATGY 1 cut(s) 140
BstPAI GACNNNNGTC 1 cut(s) 484
BstSCI CCNGG 2 cut(s) 853, 945
BstSLI GKGCMC 1 cut(s) 769
BstV1I GCAGC 3 cut(s) 17, 314, 858
BsuRI GGCC 5 cut(s) 290, 510, 634, 950, 1348
BtsCI GGATG 4 cut(s) 360, 526, 925, 1157
BtsIMutI CAGTG 1 cut(s) 898
Cac8I GCNNGC 2 cut(s) 961, 1350
CciI TCATGA 2 cut(s) 568, 757
CfoI GCGC 1 cut(s) 1186
Cfr10I RCCGGY 1 cut(s) 1344
Cfr13I GGNCC 2 cut(s) 479, 905
CseI GACGC 1 cut(s) 926
Csp6I GTAC 4 cut(s) 153, 379, 490, 590
CviAII CATG 7 cut(s) 137, 245, 517, 569, 758, 971, 1034
CviQI GTAC 4 cut(s) 153, 379, 490, 590
DdeI CTNAG 2 cut(s) 886, 1397
DpnI GATC 3 cut(s) 22, 630, 789
DpnII GATC 3 cut(s) 20, 628, 787
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 536, 1301
EarI CTCTTC 2 cut(s) 536, 1301
Eco31I GGTCTC 1 cut(s) 754
Eco47I GGWCC 2 cut(s) 479, 905
Eco57I CTGAAG 1 cut(s) 1131
EcoRII CCWGG 2 cut(s) 853, 945
Esp3I CGTCTC 2 cut(s) 855, 871
FaeI CATG 7 cut(s) 140, 248, 520, 572, 761, 974, 1037
FalI AAGNNNNNCTT 4 cut(s) 306, 338, 1076, 1108
FaqI GGGAC 2 cut(s) 1022, 1120
FatI CATG 7 cut(s) 136, 244, 516, 568, 757, 970, 1033
FauNDI CATATG 1 cut(s) 1374
Fnu4HI GCNGC 3 cut(s) 6, 303, 872
FokI GGATG 4 cut(s) 347, 533, 912, 1164
Fsp4HI GCNGC 3 cut(s) 6, 303, 872
FspBI CTAG 2 cut(s) 1119, 1125
GlaI GCGC 1 cut(s) 1185
GluI GCNGC 3 cut(s) 6, 303, 872
GsaI CCCAGC 1 cut(s) 1357
HaeIII GGCC 5 cut(s) 290, 510, 634, 950, 1348
HapII CCGG 3 cut(s) 1160, 1250, 1345
HgaI GACGC 1 cut(s) 926
HhaI GCGC 1 cut(s) 1186
Hin1I GRCGYC 1 cut(s) 864
Hin1II CATG 7 cut(s) 140, 248, 520, 572, 761, 974, 1037
Hin6I GCGC 1 cut(s) 1184
HinP1I GCGC 1 cut(s) 1184
HinfI GANTC 5 cut(s) 406, 429, 544, 846, 920
HpaII CCGG 3 cut(s) 1160, 1250, 1345
HphI GGTGA 5 cut(s) 15, 177, 667, 1055, 1324
Hpy166II GTNNAC 2 cut(s) 379, 1221
Hpy188I TCNGA 6 cut(s) 20, 127, 343, 405, 841, 1174
Hpy188III TCNNGA 6 cut(s) 433, 569, 758, 929, 1205, 1258
Hpy8I GTNNAC 2 cut(s) 379, 1221
HpyAV CCTTC 8 cut(s) 65, 85, 225, 446, 500, 836, 961, 1320
HpyCH4III ACNGT 3 cut(s) 152, 647, 656
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 5 cut(s) 239, 825, 1148, 1303, 1318
HpyF10VI GCNNNNNNNGC 8 cut(s) 302, 956, 965, 1145, 1336, 1345, 1354, 1402
HpyF3I CTNAG 2 cut(s) 886, 1397
HpySE526I ACGT 1 cut(s) 864
Hsp92I GRCGYC 1 cut(s) 864
Hsp92II CATG 7 cut(s) 140, 248, 520, 572, 761, 974, 1037
HspAI GCGC 1 cut(s) 1184
Kzo9I GATC 3 cut(s) 20, 628, 787
LmnI GCTCC 3 cut(s) 457, 731, 1212
Lsp1109I GCAGC 3 cut(s) 17, 314, 858
LweI GCATC 1 cut(s) 1305
MaeI CTAG 2 cut(s) 1119, 1125
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 2 cut(s) 407, 673
MalI GATC 3 cut(s) 22, 630, 789
MboI GATC 3 cut(s) 20, 628, 787
MboII GAAGA 8 cut(s) 50, 53, 111, 114, 553, 557, 1034, 1318
MfeI CAATTG 1 cut(s) 284
MhlI GDGCHC 3 cut(s) 769, 970, 1167
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 6 cut(s) 284, 1057, 1068, 1230, 1298, 1389
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 3 cut(s) 415, 553, 914
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 4 cut(s) 87, 162, 792, 1426
MslI CAYNNNNRTG 4 cut(s) 416, 567, 815, 930
Msp20I TGGCCA 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 3 cut(s) 1160, 1250, 1345
MspR9I CCNGG 2 cut(s) 855, 947
MunI CAATTG 1 cut(s) 284
MvaI CCWGG 2 cut(s) 855, 947
MwoI GCNNNNNNNGC 8 cut(s) 302, 956, 965, 1145, 1336, 1345, 1354, 1402
NdeI CATATG 1 cut(s) 1374
NdeII GATC 3 cut(s) 20, 628, 787
NlaIII CATG 7 cut(s) 140, 248, 520, 572, 761, 974, 1037
NlaIV GGNNCC 1 cut(s) 768
NmuCI GTSAC 2 cut(s) 407, 673
NspI RCATGY 1 cut(s) 140
PagI TCATGA 2 cut(s) 568, 757
PciI ACATGT 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 664
PfeI GAWTC 2 cut(s) 429, 846
PflFI GACNNNGTC 1 cut(s) 245
PflMI CCANNNNNTGG 3 cut(s) 517, 745, 1072
PkrI GCNGC 3 cut(s) 7, 304, 873
PleI GAGTC 3 cut(s) 414, 552, 914
PpsI GAGTC 3 cut(s) 414, 552, 914
PscI ACATGT 1 cut(s) 136
PshAI GACNNNNGTC 1 cut(s) 484
Psp6I CCWGG 2 cut(s) 853, 945
PspFI CCCAGC 1 cut(s) 1353
PspGI CCWGG 2 cut(s) 853, 945
PspN4I GGNNCC 1 cut(s) 768
PspPI GGNCC 2 cut(s) 479, 905
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 4 cut(s) 154, 380, 491, 591
RsaNI GTAC 4 cut(s) 153, 379, 490, 590
RseI CAYNNNNRTG 4 cut(s) 416, 567, 815, 930
SaqAI TTAA 4 cut(s) 87, 162, 792, 1426
SatI GCNGC 3 cut(s) 6, 303, 872
Sau3AI GATC 3 cut(s) 20, 628, 787
Sau96I GGNCC 2 cut(s) 479, 905
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 3 cut(s) 415, 553, 914
ScrFI CCNGG 2 cut(s) 855, 947
SduI GDGCHC 3 cut(s) 769, 970, 1167
SfaNI GCATC 1 cut(s) 1305
SinI GGWCC 2 cut(s) 479, 905
SmiMI CAYNNNNRTG 4 cut(s) 416, 567, 815, 930
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 6 cut(s) 284, 1057, 1068, 1230, 1298, 1389
SsiI CCGC 1 cut(s) 963
SspMI CTAG 2 cut(s) 1119, 1125
StyD4I CCNGG 2 cut(s) 853, 945
TaaI ACNGT 3 cut(s) 152, 647, 656
TaiI ACGT 1 cut(s) 867
TaqI TCGA 4 cut(s) 559, 658, 700, 918
TasI AATT 6 cut(s) 284, 1057, 1068, 1230, 1298, 1389
TatI WGTACW 2 cut(s) 152, 378
TfiI GAWTC 2 cut(s) 429, 846
Tru1I TTAA 4 cut(s) 87, 162, 792, 1426
Tru9I TTAA 4 cut(s) 87, 162, 792, 1426
TscAI CASTG 1 cut(s) 898
TseFI GTSAC 2 cut(s) 407, 673
TseI GCWGC 3 cut(s) 5, 302, 871
Tsp45I GTSAC 2 cut(s) 407, 673
TspDTI ATGAA 6 cut(s) 384, 389, 505, 557, 799, 1361
TspRI CASTG 1 cut(s) 898
Tth111I GACNNNGTC 1 cut(s) 245
Van91I CCANNNNNTGG 3 cut(s) 517, 745, 1072
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 2 cut(s) 479, 905
XapI RAATTY 1 cut(s) 1230
XceI RCATGY 1 cut(s) 140
XspI CTAG 2 cut(s) 1119, 1125
ZraI GACGTC 1 cut(s) 865
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.