Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000987

Physical Location & Seq

Genomic Coordinates Reverse (-)

542014 .. 545417

Gene Structure 3404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG007900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGTTGATAGGAGTCATATAGAAATGGTCAAGACATTCAAGGTCTGGGCCTATAGGGAAGGAGAAGTACCAATGGTCCATGATGGGCCAACTTCGTACCTCTACTCCATAGAGGGCCAGTTCATTTTTGAGATGGAAAGTCGGCCAAGCCCTTTCATGGCCCAGCATCCTGATGAGGCTCATACATTTTTCTTACCATTGAGTGTGTCCAAGATTACTGACTTCCTGTTCAGACCTCACCATGAGACATTTTTTCATCGACTGGGCCGCGTCTTCACCGACTACATTCATGTTGTACAAGAAAAGTATCCCTACTGGAATAGGAGTGGTGGAGCAGACCATTTTATGGTCTCATGTCATGATTGGGCATCACTTATCCAACGTGATGACCCCAAGCCGTACAAGAATCTGATGAAGGTGTTATGCAATGCAAACATCTCTGAAGGGTTTAAGCCTACTAGAGATGTCTCAATACCAGAATACAACTTAAAACGCTACGAGCTTGGCCCGCCCCGTTTTGGGCTACCCCCTGATAACCGTACTGTCCTTGCTTTCTTTGCTGGTGCAGCCCATGGAGACATAAGGAGCATTTTGTTTGAGCATTGGAAGGAAAAAGATGATGAAGTTCGGGTCTATGAAAAACTTCCTCAGACTATAAACTACCACAAGATCATGGGACAAACCAAGTTTTGCTTGTGCCCGAGTGGTTCTGAAGTGGCAAGTCCTAGAGTAGTGGAGGCAATGAATGCAGGGTGTGTCCCGGTGCTAATTTCCGATTCCTATGCAATACCTTTTGCTGATGTTCTTAACTGGAACAAGTTTTCTATACAAATTCCGCCCAAGAGAATATCAGAAATCAAGACAATATTGAAGGCTGTTCCACACAAAAGGTACTTGACATTGCAGAAGAGGGTGATACAAGTGAGAAGGCATTTTGAGCTCAACCGACCAGCTAAGCCATTTGATGTATTCCATATGGTGCTTCACTCAGTGTGGCTTAAAAGGCTCAACATTCGATTACCTGATAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

344

Amino Acids

40.22

Weight (kDa)

9.12

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	13 - 292	1.5e-55	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42180 AT3G42180
fragaria_vesca	FvH4_1g02510 FvH4_1g02510 FvH4_1g02511 FvH4_1g02520 FvH4_1g02520 FvH4_6g00700 FvH4_6g00700 FvH4_6g00700
malus_domestica	MD02G1022600.v1.1 MD04G1242600.v1.1 MD04G1243200.v1.1 MD04G1243300.v1.1 MD04G1243400.v1.1 MD15G1165200.v1.1 MD15G1165300.v1.1
prunus_persica	Prupe.6G359500_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.7G249500_v2.0.a1 Prupe.7G249600_v2.0.a1 Prupe.7G249600_v2.0.a1
pyrus_communis	pycom04g21420
rosa_chinensis	RchiOBHm_Chr2g0087521 RchiOBHm_Chr2g0087541 RchiOBHm_Chr2g0087551 RchiOBHm_Chr3g0448141 RchiOBHm_Chr3g0448161
rosa_laevigata	RLG00000015875 RLG00000015876 RLG00000015877 RLG00000025942 RLG00000025943
rosa_multiflora	Rmu_sc0002299.1_g000012 Rmu_sc0002299.1_g000014 Rmu_sc0002299.1_g000020 Rmu_sc0005969.1_g000031
rosa_roxburghii	Rroxscaffold_2G00153480 Rroxscaffold_6G00426270 Rroxscaffold_6G00426300
rosa_rugosa	Rorug01G0476400 Rorug01G0476400 Rorug01G0476400 Rorug02G0608400 Rorug02G0608400 Rorug02G0608500
rosa_samantha	Rh2AG029600 Rh2AG029700 Rh2AG029800 Rh2BG029700 Rh2BG029800 Rh3BG007800 Rh3BG007900 Rh3CG007800 Rh3CG008000 Rh3DG008200
rosa_wichuraiana	Rw2G002350 Rw2G002360 Rw2G002370 Rw3G000650 Rw3G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	346
AccII	CGCG	1 cut(s)	270
AciI	CCGC	3 cut(s)	268, 509, 836
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	831, 1028
AcuI	CTGAAG	2 cut(s)	462, 732
AdeI	CACNNNGTG	1 cut(s)	991
AfaI	GTAC	6 cut(s)	69, 98, 297, 401, 541, 893
AfiI	CCNNNNNNNGG	4 cut(s)	157, 346, 518, 519
AgsI	TTSAA	2 cut(s)	40, 871
AluBI	AGCT	3 cut(s)	502, 940, 953
AluI	AGCT	3 cut(s)	502, 940, 953
Alw21I	GWGCWC	1 cut(s)	942
Alw26I	GTCTC	4 cut(s)	239, 355, 472, 570
Ama87I	CYCGRG	1 cut(s)	700
AoxI	GGCC	7 cut(s)	48, 86, 115, 143, 159, 265, 505
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	2 cut(s)	831, 1028
Asp700I	GAANNNNTTC	1 cut(s)	642
AspS9I	GGNCC	7 cut(s)	48, 76, 86, 115, 160, 265, 506
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	3 cut(s)	230, 268, 925
AvaI	CYCGRG	1 cut(s)	700
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	942
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	942
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	2 cut(s)	77, 127
BceAI	ACGGC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	764, 798
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	761
BcoDI	GTCTC	4 cut(s)	239, 355, 472, 570
BfaI	CTAG	2 cut(s)	459, 726
BfmI	CTRYAG	1 cut(s)	52
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	2 cut(s)	268, 567
BlpI	GCTNAGC	1 cut(s)	954
BlsI	GCNGC	2 cut(s)	269, 568
Bme1390I	CCNGG	1 cut(s)	761
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	700
BmgT120I	GGNCC	7 cut(s)	48, 76, 86, 115, 160, 265, 506
BmrFI	CCNGG	1 cut(s)	761
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	175, 377
BmuI	ACTGGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	265
Bpu1102I	GCTNAGC	1 cut(s)	954
BpuMI	CCSGG	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 346, 518, 519
Bse1I	ACTGG	4 cut(s)	118, 267, 320, 815
Bse3DI	GCAATG	3 cut(s)	433, 747, 899
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	4 cut(s)	157, 346, 518, 519
BseMI	GCAATG	3 cut(s)	433, 747, 899
BseMII	CTCAG	2 cut(s)	662, 1002
BseNI	ACTGG	4 cut(s)	118, 267, 320, 815
BseSI	GKGCMC	1 cut(s)	701
BseXI	GCAGC	1 cut(s)	578
BseYI	CCCAGC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	7 cut(s)	50, 88, 117, 145, 161, 267, 507
BsiHKAI	GWGCWC	1 cut(s)	942
BsiHKCI	CYCGRG	1 cut(s)	700
BsiSI	CCGG	1 cut(s)	761
BslFI	GGGAC	2 cut(s)	690, 743
BslI	CCNNNNNNNGG	4 cut(s)	157, 346, 518, 519
BsmAI	GTCTC	4 cut(s)	239, 355, 472, 570
BsmFI	GGGAC	2 cut(s)	690, 743
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	7 cut(s)	50, 88, 117, 145, 161, 267, 507
Bso31I	GGTCTC	1 cut(s)	355
BsoBI	CYCGRG	1 cut(s)	700
Bsp1286I	GDGCHC	2 cut(s)	701, 942
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	669
Bsp1720I	GCTNAGC	1 cut(s)	954
Bsp19I	CCATGG	1 cut(s)	571
BspACI	CCGC	3 cut(s)	268, 509, 836
BspANI	GGCC	7 cut(s)	50, 88, 117, 145, 161, 267, 507
BspCNI	CTCAG	2 cut(s)	661, 1001
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	355
BsrDI	GCAATG	3 cut(s)	433, 747, 899
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	4 cut(s)	118, 267, 320, 815
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	571
Bst4CI	ACNGT	2 cut(s)	539, 544
Bst6I	CTCTTC	1 cut(s)	902
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstAUI	TGTACA	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	3 cut(s)	648, 954, 988
BstDSI	CCRYGG	1 cut(s)	571
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	672
BstMAI	GTCTC	4 cut(s)	239, 355, 472, 570
BstMBI	GATC	1 cut(s)	669
BstMWI	GCNNNNNNNGC	6 cut(s)	508, 557, 566, 746, 937, 1003
BstSCI	CCNGG	1 cut(s)	759
BstSFI	CTRYAG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	701
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	578
BstV2I	GAAGAC	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	7 cut(s)	50, 88, 117, 145, 161, 267, 507
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	1 cut(s)	509
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	7 cut(s)	48, 76, 86, 115, 160, 265, 506
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	6 cut(s)	68, 97, 296, 400, 540, 892
CviAII	CATG	8 cut(s)	80, 157, 242, 290, 354, 359, 572, 673
CviQI	GTAC	6 cut(s)	68, 97, 296, 400, 540, 892
DdeI	CTNAG	3 cut(s)	648, 954, 988
DpnI	GATC	1 cut(s)	671
DpnII	GATC	1 cut(s)	669
DraIII	CACNNNGTG	1 cut(s)	991
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	902
EarI	CTCTTC	1 cut(s)	902
EciI	GGCGGA	1 cut(s)	825
Ecl136II	GAGCTC	1 cut(s)	940
Eco130I	CCWWGG	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	942
Eco31I	GGTCTC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	940
Eco57I	CTGAAG	2 cut(s)	462, 732
Eco88I	CYCGRG	1 cut(s)	700
EcoICRI	GAGCTC	1 cut(s)	940
EcoT14I	CCWWGG	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	942
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	8 cut(s)	83, 160, 245, 293, 357, 362, 575, 676
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	2 cut(s)	690, 743
FatI	CATG	8 cut(s)	79, 156, 241, 289, 353, 358, 571, 672
FauI	CCCGC	1 cut(s)	516
FauNDI	CATATG	1 cut(s)	975
Fnu4HI	GCNGC	2 cut(s)	268, 567
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	942
Fsp4HI	GCNGC	2 cut(s)	268, 567
FspBI	CTAG	2 cut(s)	459, 726
GluI	GCNGC	2 cut(s)	268, 567
GsaI	CCCAGC	1 cut(s)	166
HaeIII	GGCC	7 cut(s)	50, 88, 117, 145, 161, 267, 507
HapII	CCGG	1 cut(s)	761
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	8 cut(s)	83, 160, 245, 293, 357, 362, 575, 676
HinfI	GANTC	3 cut(s)	13, 406, 776
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	3 cut(s)	230, 268, 925
Hpy188I	TCNGA	7 cut(s)	233, 411, 442, 651, 712, 775, 853
Hpy188III	TCNNGA	4 cut(s)	31, 170, 359, 859
HpyAV	CCTTC	6 cut(s)	53, 409, 437, 601, 865, 921
HpyCH4III	ACNGT	2 cut(s)	539, 544
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	6 cut(s)	426, 431, 566, 749, 785, 904
HpyF10VI	GCNNNNNNNGC	6 cut(s)	508, 557, 566, 746, 937, 1003
HpyF3I	CTNAG	3 cut(s)	648, 954, 988
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	8 cut(s)	83, 160, 245, 293, 357, 362, 575, 676
Kzo9I	GATC	1 cut(s)	669
LmnI	GCTCC	2 cut(s)	332, 585
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	2 cut(s)	175, 377
MaeI	CTAG	2 cut(s)	459, 726
MaeII	ACGT	1 cut(s)	382
MalI	GATC	1 cut(s)	671
MboI	GATC	1 cut(s)	669
MboII	GAAGA	2 cut(s)	265, 919
MhlI	GDGCHC	2 cut(s)	701, 942
MluCI	AATT	3 cut(s)	768, 831, 1028
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	7 cut(s)	106, 110, 169, 246, 657, 730, 903
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	4 cut(s)	450, 488, 807, 999
MslI	CAYNNNNRTG	1 cut(s)	171
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	761
Mva1269I	GAATGC	1 cut(s)	751
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	6 cut(s)	508, 557, 566, 746, 937, 1003
NciI	CCSGG	1 cut(s)	761
NcoI	CCATGG	1 cut(s)	571
NdeI	CATATG	1 cut(s)	975
NdeII	GATC	1 cut(s)	669
NlaIII	CATG	8 cut(s)	83, 160, 245, 293, 357, 362, 575, 676
PagI	TCATGA	1 cut(s)	358
PctI	GAATGC	1 cut(s)	751
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	406, 776
PflMI	CCANNNNNTGG	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	269, 568
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	942
PspFI	CCCAGC	1 cut(s)	162
PspPI	GGNCC	7 cut(s)	48, 76, 86, 115, 160, 265, 506
RsaI	GTAC	6 cut(s)	69, 98, 297, 401, 541, 893
RsaNI	GTAC	6 cut(s)	68, 97, 296, 400, 540, 892
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	942
SaqAI	TTAA	4 cut(s)	450, 488, 807, 999
SatI	GCNGC	2 cut(s)	268, 567
Sau3AI	GATC	1 cut(s)	669
Sau96I	GGNCC	7 cut(s)	48, 76, 86, 115, 160, 265, 506
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	761
SduI	GDGCHC	2 cut(s)	701, 942
SfaNI	GCATC	2 cut(s)	175, 377
SfcI	CTRYAG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	3 cut(s)	768, 831, 1028
SsiI	CCGC	3 cut(s)	268, 509, 836
SspI	AATATT	1 cut(s)	867
SspMI	CTAG	2 cut(s)	459, 726
SstI	GAGCTC	1 cut(s)	942
StyD4I	CCNGG	1 cut(s)	759
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	539, 544
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	259, 1015
TasI	AATT	3 cut(s)	768, 831, 1028
TatI	WGTACW	1 cut(s)	295
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	406, 776
Tru1I	TTAA	4 cut(s)	450, 488, 807, 999
Tru9I	TTAA	4 cut(s)	450, 488, 807, 999
TscAI	CASTG	1 cut(s)	996
TseI	GCWGC	1 cut(s)	566
TspDTI	ATGAA	8 cut(s)	112, 145, 245, 278, 428, 636, 651, 758
TspRI	CASTG	1 cut(s)	996
Van91I	CCANNNNNTGG	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	2 cut(s)	831, 1028
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	2 cut(s)	459, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.