Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002299.1

Orthogroup ID

OG0000987

Physical Location & Seq

Genomic Coordinates Forward (+)

91675 .. 92962

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002299.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgataaagaggtttaaggtgtggagttacaaggaaggacaacttcccttgacccatgtcgggccaatggattgcatatactccatagaaggtcattttatcgacgaaatgggaaatgggaaaagccccttcatggctcaacatcatgatgaggctcatgtatattttcttcctatgagtgtggccaacattgtgaagtacatctacatgccggtcaccgactggcatcgtgctcggatggtacgggtggtcaaagattacgtcaatcttatagcagacaggtacccacattggaatagaagcaaaggagccgaccactttatgctctcttgtcatgattgggcaccaggagttactaaagatgatcctgagctctatgcgaacttgatgagggtactatgcaatgccaacacctctgaaggattcaaacccatcagagatgtttctgtaccagaatacaacattttagacaaactgaagctcaactctttctctcttggccaaccacctgataggcgctcaatactcggctttttcgctggtggtcgagctcatggagacataagaccattgctattcgaacactgggaaaataaagacgctgaaattctagtgtacgagaaggttccaaaggagctcaactacaataagttgatggaacagagcaagttttgcttttgccctagtggttgggaagtggcaagtcctaggattaccgaatcacttcaatcgggatgtgttccagtgatcattgcggacaattacgaattgccctttaacgatgtgctcgattggtgcaagttttcgcttttcatcccgtcgagtagaataccagaaataaagaccatcttgaagggagtttcagataaaaagtacttgaagatgcagcggagggtgatgaaagtgagaaggcattttgagctcaaccgacctgctaagccttttgacgtgattcatatggtgcttcactcggtttggctcagaaggcttaacgtcaagttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

334

Amino Acids

38.95

Weight (kDa)

9.0

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42180 AT3G42180
fragaria_vesca	FvH4_1g02510 FvH4_1g02510 FvH4_1g02511 FvH4_1g02520 FvH4_1g02520 FvH4_6g00700 FvH4_6g00700 FvH4_6g00700
malus_domestica	MD02G1022600.v1.1 MD04G1242600.v1.1 MD04G1243200.v1.1 MD04G1243300.v1.1 MD04G1243400.v1.1 MD15G1165200.v1.1 MD15G1165300.v1.1
prunus_persica	Prupe.6G359500_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.7G249500_v2.0.a1 Prupe.7G249600_v2.0.a1 Prupe.7G249600_v2.0.a1
pyrus_communis	pycom04g21420
rosa_chinensis	RchiOBHm_Chr2g0087521 RchiOBHm_Chr2g0087541 RchiOBHm_Chr2g0087551 RchiOBHm_Chr3g0448141 RchiOBHm_Chr3g0448161
rosa_laevigata	RLG00000015875 RLG00000015876 RLG00000015877 RLG00000025942 RLG00000025943
rosa_multiflora	Rmu_sc0002299.1_g000012 Rmu_sc0002299.1_g000014 Rmu_sc0002299.1_g000020 Rmu_sc0005969.1_g000031
rosa_roxburghii	Rroxscaffold_2G00153480 Rroxscaffold_6G00426270 Rroxscaffold_6G00426300
rosa_rugosa	Rorug01G0476400 Rorug01G0476400 Rorug01G0476400 Rorug02G0608400 Rorug02G0608400 Rorug02G0608500
rosa_samantha	Rh2AG029600 Rh2AG029700 Rh2AG029800 Rh2BG029700 Rh2BG029800 Rh3BG007800 Rh3BG007900 Rh3CG007800 Rh3CG008000 Rh3DG008200
rosa_wichuraiana	Rw2G002350 Rw2G002360 Rw2G002370 Rw3G000650 Rw3G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	940
Acc65I	GGTACC	1 cut(s)	282
AccB1I	GGYRCC	2 cut(s)	282, 343
AciI	CCGC	2 cut(s)	755, 889
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	2 cut(s)	183, 499
AcsI	RAATTY	1 cut(s)	606
AcuI	CTGAAG	2 cut(s)	438, 497
AfaI	GTAC	7 cut(s)	200, 243, 284, 396, 450, 617, 875
AfiI	CCNNNNNNNGG	2 cut(s)	60, 133
AgsI	TTSAA	4 cut(s)	427, 728, 853, 880
AjiI	CACGTC	1 cut(s)	949
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	5 cut(s)	373, 481, 551, 637, 922
AluI	AGCT	5 cut(s)	373, 481, 551, 637, 922
Alw21I	GWGCWC	6 cut(s)	235, 375, 553, 639, 789, 924
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	3 cut(s)	62, 183, 499
ApeKI	GCWGC	1 cut(s)	886
ApoI	RAATTY	1 cut(s)	606
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
Asp700I	GAANNNNTTC	1 cut(s)	723
Asp718I	GGTACC	1 cut(s)	282
AspA2I	CCTAGG	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	208, 907
AsuII	TTCGAA	1 cut(s)	579
AvrII	CCTAGG	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	346
BalI	TGGCCA	2 cut(s)	185, 501
BanI	GGYRCC	2 cut(s)	282, 343
BanII	GRGCYC	4 cut(s)	375, 553, 639, 924
BarI	GAAGNNNNNNTAC	4 cut(s)	153, 185, 188, 220
Bbv12I	GWGCWC	6 cut(s)	235, 375, 553, 639, 789, 924
BbvI	GCAGC	1 cut(s)	898
BccI	CCATC	4 cut(s)	232, 440, 649, 854
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	1 cut(s)	348
BclI	TGATCA	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	3 cut(s)	611, 684, 708
BfoI	RGCGCY	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	940
BisI	GCNGC	1 cut(s)	887
BlnI	CCTAGG	1 cut(s)	707
BlpI	GCTNAGC	1 cut(s)	936
BlsI	GCNGC	1 cut(s)	888
BmcAI	AGTACT	1 cut(s)	875
Bme1390I	CCNGG	1 cut(s)	348
BmgBI	CACGTC	1 cut(s)	949
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	4 cut(s)	284, 310, 345, 627
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	595
BmsI	GCATC	2 cut(s)	235, 873
BmuI	ACTGGG	1 cut(s)	595
BoxI	GACNNNNGTC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu1102I	GCTNAGC	1 cut(s)	936
Bpu14I	TTCGAA	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 133
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	3 cut(s)	227, 590, 743
Bse3DI	GCAATG	3 cut(s)	409, 569, 750
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	707
BseGI	GGATG	3 cut(s)	243, 740, 813
BseLI	CCNNNNNNNGG	2 cut(s)	60, 133
BseMI	GCAATG	3 cut(s)	409, 569, 750
BseMII	CTCAG	2 cut(s)	360, 994
BseNI	ACTGG	3 cut(s)	227, 590, 743
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	898
BshFI	GGCC	3 cut(s)	64, 185, 501
BshNI	GGYRCC	2 cut(s)	282, 343
BsiHKAI	GWGCWC	6 cut(s)	235, 375, 553, 639, 789, 924
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	60, 133
BsmAI	GTCTC	1 cut(s)	552
BsnI	GGCC	3 cut(s)	64, 185, 501
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	7 cut(s)	235, 346, 375, 553, 639, 789, 924
Bsp143I	GATC	2 cut(s)	364, 747
Bsp1720I	GCTNAGC	1 cut(s)	936
BspACI	CCGC	2 cut(s)	755, 889
BspANI	GGCC	3 cut(s)	64, 185, 501
BspCNI	CTCAG	2 cut(s)	361, 993
BspHI	TCATGA	2 cut(s)	145, 334
BspLI	GGNNCC	4 cut(s)	284, 310, 345, 627
BspMI	ACCTGC	1 cut(s)	940
BspPI	GGATC	1 cut(s)	359
BspT104I	TTCGAA	1 cut(s)	579
BspT107I	GGYRCC	2 cut(s)	282, 343
BsrDI	GCAATG	3 cut(s)	409, 569, 750
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	227, 590, 743
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	707
BssMI	GATC	2 cut(s)	364, 747
BssT1I	CCWWGG	1 cut(s)	707
Bst2UI	CCWGG	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	672
BstBI	TTCGAA	1 cut(s)	579
BstDEI	CTNAG	3 cut(s)	369, 936, 980
BstEII	GGTNACC	1 cut(s)	214
BstF5I	GGATG	3 cut(s)	243, 740, 813
BstH2I	RGCGCY	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	2 cut(s)	367, 750
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	2 cut(s)	364, 747
BstMWI	GCNNNNNNNGC	3 cut(s)	672, 919, 985
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	1 cut(s)	211
BstPAI	GACNNNNGTC	1 cut(s)	56
BstPI	GGTNACC	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	898
BsuRI	GGCC	3 cut(s)	64, 185, 501
BtrI	CACGTC	1 cut(s)	949
BtsCI	GGATG	3 cut(s)	243, 740, 813
BtsIMutI	CAGTG	2 cut(s)	583, 750
BveI	ACCTGC	1 cut(s)	940
CciI	TCATGA	2 cut(s)	145, 334
CfoI	GCGC	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	7 cut(s)	199, 242, 283, 395, 449, 616, 874
CviAII	CATG	7 cut(s)	56, 133, 146, 158, 208, 335, 554
CviQI	GTAC	7 cut(s)	199, 242, 283, 395, 449, 616, 874
DdeI	CTNAG	3 cut(s)	369, 936, 980
DpnI	GATC	2 cut(s)	366, 749
DpnII	GATC	2 cut(s)	364, 747
EaeI	YGGCCR	2 cut(s)	183, 499
Ecl136II	GAGCTC	4 cut(s)	373, 551, 637, 922
Eco130I	CCWWGG	1 cut(s)	707
Eco24I	GRGCYC	4 cut(s)	375, 553, 639, 924
Eco53kI	GAGCTC	4 cut(s)	373, 551, 637, 922
Eco57I	CTGAAG	2 cut(s)	438, 497
Eco91I	GGTNACC	1 cut(s)	214
EcoICRI	GAGCTC	4 cut(s)	373, 551, 637, 922
EcoO65I	GGTNACC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	707
EcoT38I	GRGCYC	4 cut(s)	375, 553, 639, 924
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	7 cut(s)	59, 136, 149, 161, 211, 338, 557
FalI	AAGNNNNNCTT	6 cut(s)	27, 59, 659, 691, 833, 865
FatI	CATG	7 cut(s)	55, 132, 145, 157, 207, 334, 553
FauNDI	CATATG	1 cut(s)	957
FbaI	TGATCA	1 cut(s)	747
Fnu4HI	GCNGC	1 cut(s)	887
FokI	GGATG	3 cut(s)	250, 747, 800
FriOI	GRGCYC	4 cut(s)	375, 553, 639, 924
Fsp4HI	GCNGC	1 cut(s)	887
FspBI	CTAG	3 cut(s)	611, 684, 708
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	1 cut(s)	887
HaeII	RGCGCY	1 cut(s)	520
HaeIII	GGCC	3 cut(s)	64, 185, 501
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	608
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	7 cut(s)	59, 136, 149, 161, 211, 338, 557
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	3 cut(s)	423, 719, 952
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	208, 907
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	5 cut(s)	237, 418, 437, 865, 983
Hpy188III	TCNNGA	5 cut(s)	146, 335, 368, 732, 850
Hpy8I	GTNNAC	1 cut(s)	616
Hpy99I	CGWCG	2 cut(s)	107, 823
HpyAV	CCTTC	8 cut(s)	29, 83, 139, 413, 616, 847, 903, 978
HpyCH4IV	ACGT	3 cut(s)	261, 948, 993
HpyCH4V	TGCA	4 cut(s)	75, 402, 798, 886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	672, 919, 985
HpyF3I	CTNAG	3 cut(s)	369, 936, 980
HpySE526I	ACGT	3 cut(s)	261, 948, 993
Hsp92II	CATG	7 cut(s)	59, 136, 149, 161, 211, 338, 557
HspAI	GCGC	1 cut(s)	517
KpnI	GGTACC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	2 cut(s)	364, 747
LmnI	GCTCC	2 cut(s)	308, 634
Lsp1109I	GCAGC	1 cut(s)	898
LweI	GCATC	2 cut(s)	235, 873
MaeI	CTAG	3 cut(s)	611, 684, 708
MaeII	ACGT	3 cut(s)	261, 948, 993
MaeIII	GTNAC	3 cut(s)	26, 214, 352
MalI	GATC	2 cut(s)	366, 749
MboI	GATC	2 cut(s)	364, 747
MboII	GAAGA	2 cut(s)	161, 892
MhlI	GDGCHC	7 cut(s)	235, 346, 375, 553, 639, 789, 924
MlsI	TGGCCA	2 cut(s)	185, 501
MluCI	AATT	3 cut(s)	606, 760, 767
MluNI	TGGCCA	2 cut(s)	185, 501
MnlI	CCTC	5 cut(s)	3, 145, 384, 424, 885
Mox20I	TGGCCA	2 cut(s)	185, 501
MroXI	GAANNNNTTC	1 cut(s)	723
MscI	TGGCCA	2 cut(s)	185, 501
MseI	TTAA	3 cut(s)	15, 777, 990
MslI	CAYNNNNRTG	2 cut(s)	147, 206
Msp20I	TGGCCA	2 cut(s)	185, 501
MspA1I	CMGCKG	1 cut(s)	889
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	672, 919, 985
NdeI	CATATG	1 cut(s)	957
NdeII	GATC	2 cut(s)	364, 747
NlaIII	CATG	7 cut(s)	59, 136, 149, 161, 211, 338, 557
NlaIV	GGNNCC	4 cut(s)	284, 310, 345, 627
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	579
PagI	TCATGA	2 cut(s)	145, 334
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	3 cut(s)	423, 719, 952
PkrI	GCNGC	1 cut(s)	888
PshAI	GACNNNNGTC	1 cut(s)	56
Psp124BI	GAGCTC	4 cut(s)	375, 553, 639, 924
Psp6I	CCWGG	1 cut(s)	346
PspEI	GGTNACC	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	4 cut(s)	284, 310, 345, 627
PspPI	GGNCC	1 cut(s)	62
RsaI	GTAC	7 cut(s)	200, 243, 284, 396, 450, 617, 875
RsaNI	GTAC	7 cut(s)	199, 242, 283, 395, 449, 616, 874
RseI	CAYNNNNRTG	2 cut(s)	147, 206
SacI	GAGCTC	4 cut(s)	375, 553, 639, 924
SaqAI	TTAA	3 cut(s)	15, 777, 990
SatI	GCNGC	1 cut(s)	887
Sau3AI	GATC	2 cut(s)	364, 747
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	875
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	7 cut(s)	235, 346, 375, 553, 639, 789, 924
SfaNI	GCATC	2 cut(s)	235, 873
SfuI	TTCGAA	1 cut(s)	579
SmiMI	CAYNNNNRTG	2 cut(s)	147, 206
Sse9I	AATT	3 cut(s)	606, 760, 767
SsiI	CCGC	2 cut(s)	755, 889
SspMI	CTAG	3 cut(s)	611, 684, 708
SstI	GAGCTC	4 cut(s)	375, 553, 639, 924
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	1 cut(s)	707
TaiI	ACGT	3 cut(s)	264, 951, 996
TaqI	TCGA	5 cut(s)	102, 547, 579, 789, 821
TasI	AATT	3 cut(s)	606, 760, 767
TatI	WGTACW	2 cut(s)	198, 873
TfiI	GAWTC	3 cut(s)	423, 719, 952
Tru1I	TTAA	3 cut(s)	15, 777, 990
Tru9I	TTAA	3 cut(s)	15, 777, 990
TscAI	CASTG	2 cut(s)	590, 750
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	886
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	121, 802, 914, 944
TspRI	CASTG	2 cut(s)	590, 750
XapI	RAATTY	1 cut(s)	606
XceI	RCATGY	1 cut(s)	211
XmaJI	CCTAGG	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	3 cut(s)	611, 684, 708
ZrmI	AGTACT	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.