Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000987

Physical Location & Seq

Genomic Coordinates Forward (+)

2073262 .. 2074778

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG029700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGTACCGAAGGATTAGGAACAAGGTTGATGGTACCAAAGAGAAGACTAGTTTGGAGAGAATTGAAGAAGATTTAGCTAAAGCACGAGCATCAATTCTCAGGGCAATTCAGTTTAAAAACTACACATCAGAGAAAGTACAGAGTTTTGTCCCAAGAGGAAGCATTTACAAAAACCCTTATGCTTTTCACCAGAGTCACCTAGAGATGATGAACAGGTTCAAGATATGGAGCTACAAGGAAGGAGAACAACCCTTGGTCCATTTTGGTCCGATGAATGATATATATGGCATTGAAGGACACTTCATAGATGAAATAGAAAGGGAGGGGAGCCCATTTAGGGCTACAGATCCTGATGAGGCACACATGTTTTTCCTCCCATTTAGTGTAGCTAACATTGTTCACTATGTTTACTTGCCTATCACTAAAAAACAGGACTACCACCGTGATCGTCTACAACAGATTACGTGGGACTACATTGGCGTTGTGGCACATAAGTATCCCTATTGGAATAGGAGCAAAGGTGCCGACCATTTTATGGCTTCATGTCACGATTGGGCACCAGAGATTTCAGCTGGCCAATCGAAGCTTTTCAAAAACTTCATTAGAGTGCTTTGCAATGCCAACACCTCTGAAGGGTTCCAACCTAAGAGAGATGTTCCATTACCTGAAATATTTGTACCTTCTGGAAAGCTCGGTCCCCCCAATTTGGGTCAGGCTCCAAACAATCGTCGAATTCTGGCCTTCTTTGCGGGTAGAGTTCATGGACCGATTCGACCAATCTTGCTCGAGCATTGGAAGGACAAAGATGACGAAATTCAAGTCCACGAGAAGCTTCCCAAGGGCATGAACTACACCGCATTAATGGGACAAAGCAAGTTTTGCTTGTGCCCTAGTGGTTTTGAAGTGGCAAGCCCTAGAGTTGTGGAGGCATTTTATGCAGGGTGTGTTCCGGTGTTAATTTCCGACAACTACACATTACCCTTCAGTGATGTCCTTGATTGGAGCCAATTTTCAATACAAATTCCCGTCGCGAAAATACAAGAAATCAAGACCATCTTACAAGCGATTCCAAATGAGGAATACCTAAAGATGCAGAGGAAGGTTTTAAAAGTTCGGAGGCATTTTGTACTCAACAAGCCGGCTAAGCCATTTGATGTGATTCACATGGTACTTCATTCAGTGTGGTTGAGACGACTTAATTTTAAGCTTGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010393 GO:0010398 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0035252 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045488 GO:0045489 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

405

Amino Acids

46.99

Weight (kDa)

9.3

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	55 - 356	1.5e-62	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42180 AT3G42180
fragaria_vesca	FvH4_1g02510 FvH4_1g02510 FvH4_1g02511 FvH4_1g02520 FvH4_1g02520 FvH4_6g00700 FvH4_6g00700 FvH4_6g00700
malus_domestica	MD02G1022600.v1.1 MD04G1242600.v1.1 MD04G1243200.v1.1 MD04G1243300.v1.1 MD04G1243400.v1.1 MD15G1165200.v1.1 MD15G1165300.v1.1
prunus_persica	Prupe.6G359500_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.7G249500_v2.0.a1 Prupe.7G249600_v2.0.a1 Prupe.7G249600_v2.0.a1
pyrus_communis	pycom04g21420
rosa_chinensis	RchiOBHm_Chr2g0087521 RchiOBHm_Chr2g0087541 RchiOBHm_Chr2g0087551 RchiOBHm_Chr3g0448141 RchiOBHm_Chr3g0448161
rosa_laevigata	RLG00000015875 RLG00000015876 RLG00000015877 RLG00000025942 RLG00000025943
rosa_multiflora	Rmu_sc0002299.1_g000012 Rmu_sc0002299.1_g000014 Rmu_sc0002299.1_g000020 Rmu_sc0005969.1_g000031
rosa_roxburghii	Rroxscaffold_2G00153480 Rroxscaffold_6G00426270 Rroxscaffold_6G00426300
rosa_rugosa	Rorug01G0476400 Rorug01G0476400 Rorug01G0476400 Rorug02G0608400 Rorug02G0608400 Rorug02G0608500
rosa_samantha	Rh2AG029600 Rh2AG029700 Rh2AG029800 Rh2BG029700 Rh2BG029800 Rh3BG007800 Rh3BG007900 Rh3CG007800 Rh3CG008000 Rh3DG008200
rosa_wichuraiana	Rw2G002350 Rw2G002360 Rw2G002370 Rw3G000650 Rw3G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	3 cut(s)	32, 521, 556
AccB7I	CCANNNNNTGG	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	451
AccII	CGCG	1 cut(s)	1031
AciI	CCGC	2 cut(s)	749, 855
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	3 cut(s)	732, 813, 1020
AcuI	CTGAAG	2 cut(s)	651, 967
AfaI	GTAC	6 cut(s)	5, 34, 138, 678, 1128, 1170
AfiI	CCNNNNNNNGG	5 cut(s)	337, 535, 633, 706, 707
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	7 cut(s)	65, 220, 293, 592, 818, 902, 1014
AhlI	ACTAGT	1 cut(s)	47
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	8 cut(s)	77, 231, 389, 572, 586, 691, 832, 1207
AluI	AGCT	8 cut(s)	77, 231, 389, 572, 586, 691, 832, 1207
Alw26I	GTCTC	1 cut(s)	1183
AlwI	GGATC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	785
AoxI	GGCC	2 cut(s)	574, 738
ApoI	RAATTY	3 cut(s)	732, 813, 1020
ArsI	GACNNNNNNTTYG	2 cut(s)	804, 836
AseI	ATTAAT	1 cut(s)	860
Asp700I	GAANNNNTTC	2 cut(s)	215, 587
Asp718I	GGTACC	1 cut(s)	32
AspS9I	GGNCC	4 cut(s)	256, 266, 695, 764
AsuHPI	GGTGA	2 cut(s)	179, 188
AvaI	CYCGRG	1 cut(s)	785
AvaII	GGWCC	4 cut(s)	256, 266, 695, 764
BaeGI	GKGCMC	2 cut(s)	559, 890
BaeI	ACNNNNGTAYC	2 cut(s)	479, 512
BalI	TGGCCA	1 cut(s)	576
BanI	GGYRCC	3 cut(s)	32, 521, 556
BanII	GRGCYC	1 cut(s)	332
BauI	CACGAG	2 cut(s)	84, 824
BbsI	GAAGAC	1 cut(s)	50
BccI	CCATC	2 cut(s)	23, 1061
BciVI	GTATCC	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	1183
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	4 cut(s)	48, 200, 891, 915
BfmI	CTRYAG	1 cut(s)	342
BfuI	GTATCC	1 cut(s)	507
BlpI	GCTNAGC	1 cut(s)	1143
Bme18I	GGWCC	4 cut(s)	256, 266, 695, 764
BmeT110I	CYCGRG	1 cut(s)	785
BmgT120I	GGNCC	4 cut(s)	256, 266, 695, 764
BmiI	GGNNCC	8 cut(s)	34, 329, 523, 558, 638, 697, 717, 1004
BmsI	GCATC	2 cut(s)	98, 1080
BpiI	GAAGAC	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	1143
BsaAI	YACGTR	1 cut(s)	465
BsaJI	CCNNGG	2 cut(s)	252, 837
BsaWI	WCCGGW	1 cut(s)	949
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	5 cut(s)	337, 535, 633, 706, 707
Bse118I	RCCGGY	1 cut(s)	1138
Bse3DI	GCAATG	1 cut(s)	622
BseDI	CCNNGG	2 cut(s)	252, 837
BseLI	CCNNNNNNNGG	5 cut(s)	337, 535, 633, 706, 707
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	112
BseSI	GKGCMC	2 cut(s)	559, 890
Bsh1236I	CGCG	1 cut(s)	1031
BshFI	GGCC	2 cut(s)	576, 740
BshNI	GGYRCC	3 cut(s)	32, 521, 556
BsiHKCI	CYCGRG	1 cut(s)	785
BsiSI	CCGG	2 cut(s)	950, 1139
BslFI	GGGAC	4 cut(s)	134, 482, 681, 879
BslI	CCNNNNNNNGG	5 cut(s)	337, 535, 633, 706, 707
BsmAI	GTCTC	1 cut(s)	1183
BsmBI	CGTCTC	1 cut(s)	1183
BsmFI	GGGAC	4 cut(s)	134, 482, 681, 879
BsnI	GGCC	2 cut(s)	576, 740
BsoBI	CYCGRG	1 cut(s)	785
Bsp1286I	GDGCHC	3 cut(s)	332, 559, 890
Bsp143I	GATC	2 cut(s)	346, 445
Bsp1720I	GCTNAGC	1 cut(s)	1143
Bsp68I	TCGCGA	1 cut(s)	1031
BspACI	CCGC	2 cut(s)	749, 855
BspANI	GGCC	2 cut(s)	576, 740
BspCNI	CTCAG	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	1031
BspLI	GGNNCC	8 cut(s)	34, 329, 523, 558, 638, 697, 717, 1004
BspPI	GGATC	1 cut(s)	341
BspT107I	GGYRCC	3 cut(s)	32, 521, 556
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	1138
BssAI	RCCGGY	1 cut(s)	1138
BssECI	CCNNGG	2 cut(s)	252, 837
BssMI	GATC	2 cut(s)	346, 445
BssSI	CACGAG	2 cut(s)	84, 824
BssT1I	CCWWGG	2 cut(s)	252, 837
Bst2BI	CACGAG	2 cut(s)	84, 824
Bst4CI	ACNGT	1 cut(s)	443
BstAPI	GCANNNNNTGC	2 cut(s)	879, 935
BstBAI	YACGTR	1 cut(s)	465
BstC8I	GCNNGC	3 cut(s)	574, 910, 1140
BstDEI	CTNAG	3 cut(s)	98, 645, 1143
BstFNI	CGCG	1 cut(s)	1031
BstKTI	GATC	2 cut(s)	349, 448
BstMAI	GTCTC	1 cut(s)	1183
BstMBI	GATC	2 cut(s)	346, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	746, 879, 935, 1144
BstNSI	RCATGY	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	2 cut(s)	559, 890
BstUI	CGCG	1 cut(s)	1031
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	576, 740
BtsIMutI	CAGTG	2 cut(s)	991, 1185
BtuMI	TCGCGA	1 cut(s)	1031
Cac8I	GCNNGC	3 cut(s)	574, 910, 1140
CaiI	CAGNNNCTG	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	1138
Cfr13I	GGNCC	4 cut(s)	256, 266, 695, 764
Csp6I	GTAC	6 cut(s)	4, 33, 137, 677, 1127, 1169
CviAII	CATG	5 cut(s)	364, 543, 761, 844, 1165
CviQI	GTAC	6 cut(s)	4, 33, 137, 677, 1127, 1169
DdeI	CTNAG	3 cut(s)	98, 645, 1143
DpnI	GATC	2 cut(s)	348, 447
DpnII	GATC	2 cut(s)	346, 445
DraI	TTTAAA	2 cut(s)	115, 1107
EaeI	YGGCCR	1 cut(s)	574
Eco130I	CCWWGG	2 cut(s)	252, 837
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	4 cut(s)	256, 266, 695, 764
Eco57I	CTGAAG	2 cut(s)	651, 967
Eco88I	CYCGRG	1 cut(s)	785
EcoRI	GAATTC	1 cut(s)	732
EcoT14I	CCWWGG	2 cut(s)	252, 837
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	2 cut(s)	252, 837
Esp3I	CGTCTC	1 cut(s)	1183
FaeI	CATG	5 cut(s)	367, 546, 764, 847, 1168
FalI	AAGNNNNNCTT	4 cut(s)	866, 898, 1040, 1072
FaqI	GGGAC	4 cut(s)	134, 482, 681, 879
FatI	CATG	5 cut(s)	363, 542, 760, 843, 1164
FauI	CCCGC	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	451
FriOI	GRGCYC	1 cut(s)	332
FspBI	CTAG	4 cut(s)	48, 200, 891, 915
HaeIII	GGCC	2 cut(s)	576, 740
HapII	CCGG	2 cut(s)	950, 1139
Hin1II	CATG	5 cut(s)	367, 546, 764, 847, 1168
HindIII	AAGCTT	3 cut(s)	584, 830, 1205
HinfI	GANTC	4 cut(s)	193, 769, 1066, 1159
HpaII	CCGG	2 cut(s)	950, 1139
HphI	GGTGA	2 cut(s)	179, 188
Hpy166II	GTNNAC	4 cut(s)	400, 409, 452, 823
Hpy188I	TCNGA	5 cut(s)	130, 270, 631, 964, 1116
Hpy188III	TCNNGA	6 cut(s)	220, 350, 548, 684, 1030, 1048
Hpy8I	GTNNAC	4 cut(s)	400, 409, 452, 823
Hpy99I	CGWCG	2 cut(s)	732, 1031
HpyAV	CCTTC	9 cut(s)	3, 233, 287, 626, 690, 751, 790, 991, 1093
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	3 cut(s)	615, 938, 1093
HpyF10VI	GCNNNNNNNGC	4 cut(s)	746, 879, 935, 1144
HpyF3I	CTNAG	3 cut(s)	98, 645, 1143
HpySE526I	ACGT	1 cut(s)	464
Hsp92II	CATG	5 cut(s)	367, 546, 764, 847, 1168
KpnI	GGTACC	1 cut(s)	36
KroI	GCCGGC	1 cut(s)	1138
KroNI	GCCGGC	1 cut(s)	1140
Kzo9I	GATC	2 cut(s)	346, 445
LmnI	GCTCC	5 cut(s)	228, 327, 513, 721, 1002
LweI	GCATC	2 cut(s)	98, 1080
MaeI	CTAG	4 cut(s)	48, 200, 891, 915
MaeII	ACGT	1 cut(s)	464
MaeIII	GTNAC	2 cut(s)	194, 545
MalI	GATC	2 cut(s)	348, 447
MboI	GATC	2 cut(s)	346, 445
MboII	GAAGA	3 cut(s)	55, 77, 80
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	3 cut(s)	332, 559, 890
MlsI	TGGCCA	1 cut(s)	576
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	2 cut(s)	664, 987
MnlI	CCTC	9 cut(s)	149, 316, 349, 383, 637, 919, 1069, 1089, 1110
Mox20I	TGGCCA	1 cut(s)	576
MroNI	GCCGGC	1 cut(s)	1138
MroXI	GAANNNNTTC	2 cut(s)	215, 587
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	6 cut(s)	114, 860, 956, 1106, 1197, 1203
MslI	CAYNNNNRTG	1 cut(s)	605
Msp20I	TGGCCA	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	2 cut(s)	950, 1139
MvnI	CGCG	1 cut(s)	1031
MwoI	GCNNNNNNNGC	4 cut(s)	746, 879, 935, 1144
NaeI	GCCGGC	1 cut(s)	1140
NdeII	GATC	2 cut(s)	346, 445
NgoMIV	GCCGGC	1 cut(s)	1138
NlaIII	CATG	5 cut(s)	367, 546, 764, 847, 1168
NlaIV	GGNNCC	8 cut(s)	34, 329, 523, 558, 638, 697, 717, 1004
NmuCI	GTSAC	2 cut(s)	194, 545
NruI	TCGCGA	1 cut(s)	1031
NspI	RCATGY	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	785
PciI	ACATGT	1 cut(s)	363
PdiI	GCCGGC	1 cut(s)	1140
PdmI	GAANNNNTTC	2 cut(s)	215, 587
PfeI	GAWTC	3 cut(s)	769, 1066, 1159
PflMI	CCANNNNNTGG	1 cut(s)	535
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Ppu21I	YACGTR	1 cut(s)	465
PscI	ACATGT	1 cut(s)	363
PshBI	ATTAAT	1 cut(s)	860
PspN4I	GGNNCC	8 cut(s)	34, 329, 523, 558, 638, 697, 717, 1004
PspPI	GGNCC	4 cut(s)	256, 266, 695, 764
PspXI	VCTCGAGB	1 cut(s)	785
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	572
RruI	TCGCGA	1 cut(s)	1031
RsaI	GTAC	6 cut(s)	5, 34, 138, 678, 1128, 1170
RsaNI	GTAC	6 cut(s)	4, 33, 137, 677, 1127, 1169
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	6 cut(s)	114, 860, 956, 1106, 1197, 1203
Sau3AI	GATC	2 cut(s)	346, 445
Sau96I	GGNCC	4 cut(s)	256, 266, 695, 764
SchI	GAGTC	1 cut(s)	202
SduI	GDGCHC	3 cut(s)	332, 559, 890
SfaNI	GCATC	2 cut(s)	98, 1080
SfcI	CTRYAG	1 cut(s)	342
Sfr274I	CTCGAG	1 cut(s)	785
SinI	GGWCC	4 cut(s)	256, 266, 695, 764
SlaI	CTCGAG	1 cut(s)	785
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
SpeI	ACTAGT	1 cut(s)	47
SsiI	CCGC	2 cut(s)	749, 855
SspI	AATATT	1 cut(s)	672
SspMI	CTAG	4 cut(s)	48, 200, 891, 915
StyI	CCWWGG	2 cut(s)	252, 837
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	4 cut(s)	581, 730, 772, 786
TaqII	GACCGA	2 cut(s)	683, 781
TatI	WGTACW	2 cut(s)	136, 1126
TfiI	GAWTC	3 cut(s)	769, 1066, 1159
Tru1I	TTAA	6 cut(s)	114, 860, 956, 1106, 1197, 1203
Tru9I	TTAA	6 cut(s)	114, 860, 956, 1106, 1197, 1203
TscAI	CASTG	2 cut(s)	991, 1185
TseFI	GTSAC	2 cut(s)	194, 545
Tsp45I	GTSAC	2 cut(s)	194, 545
TspDTI	ATGAA	9 cut(s)	224, 287, 292, 324, 531, 589, 749, 860, 1163
TspRI	CASTG	2 cut(s)	991, 1185
Van91I	CCANNNNNTGG	1 cut(s)	535
VpaK11BI	GGWCC	4 cut(s)	256, 266, 695, 764
VspI	ATTAAT	1 cut(s)	860
XapI	RAATTY	3 cut(s)	732, 813, 1020
XceI	RCATGY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	451
XmnI	GAANNNNTTC	2 cut(s)	215, 587
XspI	CTAG	4 cut(s)	48, 200, 891, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.