Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000987

Physical Location & Seq

Genomic Coordinates Forward (+)

2023683 .. 2025241

Gene Structure 1559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGATCGAAGGAGTAGGTGCGACGTTAATGGTGCCAAAGACAAGACTAGTTTGGAGAGAATTGAAGAAGGTTTAGCTGAAGCTCGAGCTTCAATTCTCGATGCAATTTTACAAAAACCCTTATGCATTTCACCAGTTGAGAGCCACATAGAGATGATGAAGAGGTTTAAGATGTGGAGCTACAAGGAAGGAGAACATCCCTTAGTGCATTTGGGTCCGATGAATAGGATATATGGCATTGAAGGACAATTCATAGATGAAATAGTGAGGGCGGAGAGCCCATTCAGGGCTACACATCCTGATGAGGCACACATTTTTTCCCTTCCCTTTAGTGTAGCCAACAGTGTGCACTATGTGTACCGGCCTGTCATCCGAAAAGAGAACTACCTCCGTGATCGCCTACAACGGATTGCCATGGACTACATAGGTGTTGTGGCACATAAGTACCCCTACTGGAATAGAAGCAATGGTGCTGACCATTTTATGGCTTCATGTCATGACTGGGGACCGCAGATTTCACTAGGTCAATCGGAACTCCTGAAGAACTTCATTAGAGTACTTTGCAATGCCAACACCTCAGAAGGGTTTGAACCTAAAAGAGACGTTTCACTACCTGAAGTTTTTGTACCTTCTGGAAAGCTTGGCTGGCCCAATTTTGGTCAAGCCCCACACAATCGCCGGATTCAGGCCTTCTTTGCCGGTGCTGTTCATGGACCGATTCGACCTATCTTGTTCCATCATTGGAAGGACAAAGATAACGAAGTTCAAGTCCATGAGACGCTTCCCGAAGGCATGAACTACACCGCATTAATGGGACAGAGCAAGTTTTGCTTGTGCCCCAGCGGTTTTGAAGTGGCAAGTGCAAGAGTTGTGGAGGCAATTTATGCAGGGTGTATTCCAGTGATAATATCTGACCACTACACACTACCCTTTAGCGATGTCCTCGACTGGAGCCAATTTTCAATACAAATTACCGTCGCGAAAATACCAGAAATCAAGACCATCTTACAAGCGATTCCAGATGAGGAATACCAAAAGATGCAGAGAAGGGTTTTAAAAGTTCAGAGGCATTTTGTACTCAACAGACCGGCTAAGCCATTTGATGTGATTCACATGGTACTTCATTCAGTGTGGCTGAGACGAATTGACTTTAAGATTGGCTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010393 GO:0010398 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0035252 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045488 GO:0045489 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

390

Amino Acids

44.66

Weight (kDa)

8.38

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	59 - 339	1.2e-57	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42180 AT3G42180
fragaria_vesca	FvH4_1g02510 FvH4_1g02510 FvH4_1g02511 FvH4_1g02520 FvH4_1g02520 FvH4_6g00700 FvH4_6g00700 FvH4_6g00700
malus_domestica	MD02G1022600.v1.1 MD04G1242600.v1.1 MD04G1243200.v1.1 MD04G1243300.v1.1 MD04G1243400.v1.1 MD15G1165200.v1.1 MD15G1165300.v1.1
prunus_persica	Prupe.6G359500_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.7G249500_v2.0.a1 Prupe.7G249600_v2.0.a1 Prupe.7G249600_v2.0.a1
pyrus_communis	pycom04g21420
rosa_chinensis	RchiOBHm_Chr2g0087521 RchiOBHm_Chr2g0087541 RchiOBHm_Chr2g0087551 RchiOBHm_Chr3g0448141 RchiOBHm_Chr3g0448161
rosa_laevigata	RLG00000015875 RLG00000015876 RLG00000015877 RLG00000025942 RLG00000025943
rosa_multiflora	Rmu_sc0002299.1_g000012 Rmu_sc0002299.1_g000014 Rmu_sc0002299.1_g000020 Rmu_sc0005969.1_g000031
rosa_roxburghii	Rroxscaffold_2G00153480 Rroxscaffold_6G00426270 Rroxscaffold_6G00426300
rosa_rugosa	Rorug01G0476400 Rorug01G0476400 Rorug01G0476400 Rorug02G0608400 Rorug02G0608400 Rorug02G0608500
rosa_samantha	Rh2AG029600 Rh2AG029700 Rh2AG029800 Rh2BG029700 Rh2BG029800 Rh3BG007800 Rh3BG007900 Rh3CG007800 Rh3CG008000 Rh3DG008200
rosa_wichuraiana	Rw2G002350 Rw2G002360 Rw2G002370 Rw3G000650 Rw3G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccII	CGCG	1 cut(s)	980
AciI	CCGC	4 cut(s)	272, 509, 804, 843
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	3 cut(s)	99, 560, 636
AdeI	CACNNNGTG	1 cut(s)	355
AfaI	GTAC	6 cut(s)	359, 446, 558, 627, 1077, 1119
AfiI	CCNNNNNNNGG	5 cut(s)	286, 484, 582, 656, 685
AgsI	TTSAA	7 cut(s)	65, 93, 242, 590, 767, 851, 963
AhlI	ACTAGT	1 cut(s)	47
AluBI	AGCT	5 cut(s)	77, 83, 89, 180, 640
AluI	AGCT	5 cut(s)	77, 83, 89, 180, 640
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	3 cut(s)	594, 770, 1132
Alw44I	GTGCAC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	3 cut(s)	362, 647, 687
ApaLI	GTGCAC	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	753, 785
AseI	ATTAAT	1 cut(s)	809
Asp700I	GAANNNNTTC	1 cut(s)	545
AspS9I	GGNCC	4 cut(s)	215, 506, 648, 713
AsuHPI	GGTGA	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	3 cut(s)	215, 506, 713
BaeGI	GKGCMC	2 cut(s)	351, 839
BaeI	ACNNNNGTAYC	2 cut(s)	428, 461
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	281
BarI	GAAGNNNNNNTAC	2 cut(s)	609, 641
Bbv12I	GWGCWC	1 cut(s)	351
BccI	CCATC	2 cut(s)	744, 1010
BcoDI	GTCTC	3 cut(s)	594, 770, 1132
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	2 cut(s)	48, 521
BlpI	GCTNAGC	1 cut(s)	1092
BmcAI	AGTACT	1 cut(s)	558
Bme18I	GGWCC	3 cut(s)	215, 506, 713
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	4 cut(s)	215, 506, 648, 713
BmiI	GGNNCC	4 cut(s)	34, 216, 507, 953
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	2 cut(s)	91, 1029
BmuI	ACTGGG	1 cut(s)	511
BpmI	CTGGAG	1 cut(s)	970
Bpu1102I	GCTNAGC	1 cut(s)	1092
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	5 cut(s)	286, 484, 582, 656, 685
Bse118I	RCCGGY	3 cut(s)	360, 698, 1087
Bse1I	ACTGG	5 cut(s)	134, 458, 506, 899, 953
Bse3DI	GCAATG	2 cut(s)	472, 571
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	3 cut(s)	196, 295, 369
BseLI	CCNNNNNNNGG	5 cut(s)	286, 484, 582, 656, 685
BseMI	GCAATG	2 cut(s)	472, 571
BseMII	CTCAG	2 cut(s)	591, 1127
BseNI	ACTGG	5 cut(s)	134, 458, 506, 899, 953
BseSI	GKGCMC	2 cut(s)	351, 839
BseYI	CCCAGC	1 cut(s)	839
Bsh1236I	CGCG	1 cut(s)	980
BshFI	GGCC	3 cut(s)	364, 649, 689
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	4 cut(s)	361, 679, 699, 1088
BslFI	GGGAC	2 cut(s)	519, 828
BslI	CCNNNNNNNGG	5 cut(s)	286, 484, 582, 656, 685
BsmAI	GTCTC	3 cut(s)	594, 770, 1132
BsmBI	CGTCTC	3 cut(s)	594, 770, 1132
BsmFI	GGGAC	2 cut(s)	519, 828
BsnI	GGCC	3 cut(s)	364, 649, 689
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	3 cut(s)	281, 351, 839
Bsp143I	GATC	2 cut(s)	4, 394
Bsp1720I	GCTNAGC	1 cut(s)	1092
Bsp19I	CCATGG	1 cut(s)	414
Bsp68I	TCGCGA	1 cut(s)	980
BspACI	CCGC	4 cut(s)	272, 509, 804, 843
BspANI	GGCC	3 cut(s)	364, 649, 689
BspCNI	CTCAG	2 cut(s)	590, 1128
BspFNI	CGCG	1 cut(s)	980
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	4 cut(s)	34, 216, 507, 953
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	472, 571
BsrFI	RCCGGY	3 cut(s)	360, 698, 1087
BsrI	ACTGG	5 cut(s)	134, 458, 506, 899, 953
BssAI	RCCGGY	3 cut(s)	360, 698, 1087
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	2 cut(s)	4, 394
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	344, 976
Bst6I	CTCTTC	1 cut(s)	155
BstAPI	GCANNNNNTGC	2 cut(s)	828, 884
BstC8I	GCNNGC	1 cut(s)	647
BstDEI	CTNAG	4 cut(s)	202, 577, 1092, 1136
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	3 cut(s)	196, 295, 369
BstFNI	CGCG	1 cut(s)	980
BstKTI	GATC	2 cut(s)	7, 397
BstMAI	GTCTC	3 cut(s)	594, 770, 1132
BstMBI	GATC	2 cut(s)	4, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	646, 695, 828, 884
BstSLI	GKGCMC	2 cut(s)	351, 839
BstUI	CGCG	1 cut(s)	980
BsuRI	GGCC	3 cut(s)	364, 649, 689
BtgI	CCRYGG	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	951
BtsCI	GGATG	3 cut(s)	196, 295, 369
BtsIMutI	CAGTG	3 cut(s)	349, 906, 1134
BtuMI	TCGCGA	1 cut(s)	980
Cac8I	GCNNGC	1 cut(s)	647
CciI	TCATGA	1 cut(s)	496
Cfr10I	RCCGGY	3 cut(s)	360, 698, 1087
Cfr13I	GGNCC	4 cut(s)	215, 506, 648, 713
CseI	GACGC	1 cut(s)	787
Csp6I	GTAC	6 cut(s)	358, 445, 557, 626, 1076, 1118
CspCI	CAANNNNNGTGG	2 cut(s)	852, 887
CviAII	CATG	7 cut(s)	415, 492, 497, 710, 773, 793, 1114
CviQI	GTAC	6 cut(s)	358, 445, 557, 626, 1076, 1118
DdeI	CTNAG	4 cut(s)	202, 577, 1092, 1136
DpnI	GATC	2 cut(s)	6, 396
DpnII	GATC	2 cut(s)	4, 394
DraI	TTTAAA	1 cut(s)	1056
DraIII	CACNNNGTG	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	414
Eco147I	AGGCCT	1 cut(s)	689
Eco24I	GRGCYC	1 cut(s)	281
Eco47I	GGWCC	3 cut(s)	215, 506, 713
Eco57I	CTGAAG	3 cut(s)	99, 560, 636
Eco88I	CYCGRG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	414
EcoT22I	ATGCAT	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	414
Esp3I	CGTCTC	3 cut(s)	594, 770, 1132
FaeI	CATG	7 cut(s)	418, 495, 500, 713, 776, 796, 1117
FalI	AAGNNNNNCTT	4 cut(s)	815, 847, 989, 1021
FaqI	GGGAC	2 cut(s)	519, 828
FatI	CATG	7 cut(s)	414, 491, 496, 709, 772, 792, 1113
FokI	GGATG	3 cut(s)	183, 282, 356
FriOI	GRGCYC	1 cut(s)	281
FspBI	CTAG	2 cut(s)	48, 521
GsaI	CCCAGC	1 cut(s)	843
GsuI	CTGGAG	1 cut(s)	970
HaeIII	GGCC	3 cut(s)	364, 649, 689
HapII	CCGG	4 cut(s)	361, 679, 699, 1088
HgaI	GACGC	1 cut(s)	787
Hin1II	CATG	7 cut(s)	418, 495, 500, 713, 776, 796, 1117
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	4 cut(s)	682, 718, 1015, 1108
HpaII	CCGG	4 cut(s)	361, 679, 699, 1088
HphI	GGTGA	1 cut(s)	123
Hpy166II	GTNNAC	2 cut(s)	349, 358
Hpy188I	TCNGA	6 cut(s)	219, 374, 532, 580, 913, 1065
Hpy188III	TCNNGA	9 cut(s)	98, 299, 497, 538, 633, 785, 979, 997, 1019
Hpy8I	GTNNAC	2 cut(s)	349, 358
Hpy99I	CGWCG	2 cut(s)	26, 980
HpyCH4III	ACNGT	2 cut(s)	344, 976
HpyCH4IV	ACGT	2 cut(s)	24, 603
HpyCH4V	TGCA	8 cut(s)	104, 126, 208, 349, 564, 863, 887, 1042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	646, 695, 828, 884
HpyF3I	CTNAG	4 cut(s)	202, 577, 1092, 1136
HpySE526I	ACGT	2 cut(s)	24, 603
Hsp92II	CATG	7 cut(s)	418, 495, 500, 713, 776, 796, 1117
Kzo9I	GATC	2 cut(s)	4, 394
LmnI	GCTCC	2 cut(s)	177, 951
LweI	GCATC	2 cut(s)	91, 1029
MaeI	CTAG	2 cut(s)	48, 521
MaeII	ACGT	2 cut(s)	24, 603
MalI	GATC	2 cut(s)	6, 396
MboI	GATC	2 cut(s)	4, 394
MboII	GAAGA	3 cut(s)	77, 172, 553
MhlI	GDGCHC	3 cut(s)	281, 351, 839
MluCI	AATT	9 cut(s)	60, 93, 105, 248, 652, 879, 956, 969, 1143
MnlI	CCTC	9 cut(s)	156, 261, 298, 398, 586, 868, 953, 1018, 1059
Mph1103I	ATGCAT	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	545
MseI	TTAA	5 cut(s)	27, 168, 809, 1055, 1152
MslI	CAYNNNNRTG	2 cut(s)	152, 300
MspA1I	CMGCKG	1 cut(s)	843
MspI	CCGG	4 cut(s)	361, 679, 699, 1088
MvnI	CGCG	1 cut(s)	980
MwoI	GCNNNNNNNGC	4 cut(s)	646, 695, 828, 884
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	2 cut(s)	4, 394
NlaIII	CATG	7 cut(s)	418, 495, 500, 713, 776, 796, 1117
NlaIV	GGNNCC	4 cut(s)	34, 216, 507, 953
NruI	TCGCGA	1 cut(s)	980
NsiI	ATGCAT	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	84
PagI	TCATGA	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	689
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	4 cut(s)	682, 718, 1015, 1108
PflMI	CCANNNNNTGG	1 cut(s)	484
PshBI	ATTAAT	1 cut(s)	809
PspFI	CCCAGC	1 cut(s)	839
PspN4I	GGNNCC	4 cut(s)	34, 216, 507, 953
PspPI	GGNCC	4 cut(s)	215, 506, 648, 713
PspXI	VCTCGAGB	1 cut(s)	84
RruI	TCGCGA	1 cut(s)	980
RsaI	GTAC	6 cut(s)	359, 446, 558, 627, 1077, 1119
RsaNI	GTAC	6 cut(s)	358, 445, 557, 626, 1076, 1118
RseI	CAYNNNNRTG	2 cut(s)	152, 300
SaqAI	TTAA	5 cut(s)	27, 168, 809, 1055, 1152
Sau3AI	GATC	2 cut(s)	4, 394
Sau96I	GGNCC	4 cut(s)	215, 506, 648, 713
ScaI	AGTACT	1 cut(s)	558
SduI	GDGCHC	3 cut(s)	281, 351, 839
SfaNI	GCATC	2 cut(s)	91, 1029
Sfr274I	CTCGAG	1 cut(s)	84
SinI	GGWCC	3 cut(s)	215, 506, 713
SlaI	CTCGAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	152, 300
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	9 cut(s)	60, 93, 105, 248, 652, 879, 956, 969, 1143
SseBI	AGGCCT	1 cut(s)	689
SsiI	CCGC	4 cut(s)	272, 509, 804, 843
SspMI	CTAG	2 cut(s)	48, 521
StuI	AGGCCT	1 cut(s)	689
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	344, 976
TaiI	ACGT	2 cut(s)	27, 606
TaqI	TCGA	5 cut(s)	7, 85, 99, 721, 945
TaqII	GACCGA	1 cut(s)	730
TasI	AATT	9 cut(s)	60, 93, 105, 248, 652, 879, 956, 969, 1143
TatI	WGTACW	2 cut(s)	556, 1075
TfiI	GAWTC	4 cut(s)	682, 718, 1015, 1108
Tru1I	TTAA	5 cut(s)	27, 168, 809, 1055, 1152
Tru9I	TTAA	5 cut(s)	27, 168, 809, 1055, 1152
TscAI	CASTG	3 cut(s)	349, 906, 1134
TspDTI	ATGAA	9 cut(s)	173, 236, 241, 273, 480, 538, 698, 809, 1112
TspGWI	ACGGA	2 cut(s)	380, 421
TspRI	CASTG	3 cut(s)	349, 906, 1134
Van91I	CCANNNNNTGG	1 cut(s)	484
VneI	GTGCAC	1 cut(s)	347
VpaK11BI	GGWCC	3 cut(s)	215, 506, 713
VspI	ATTAAT	1 cut(s)	809
XhoI	CTCGAG	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	545
XspI	CTAG	2 cut(s)	48, 521
ZrmI	AGTACT	1 cut(s)	558
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.