RchiOBHm_Chr2g0087541

Glycosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
2230481 .. 2232195
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46298

Sequence Viewer

Length: 1446 bp
ATGACTCGAAGCTTTCGTTGCCCTGCACTTTTTTTGTTAACTACATTGTCTTGTCTTCTGTTCTTCCACCTAATCTTCACACCTTTATCGTCTGAAACCCATCTTAGTATTTCTCCAGTATCCTCTTTCACTACACCTTTGACTAATCCAGAAAAGACCAGCAACTCAACTCCATCGAAACATGTAGCTTCTTTAGATGAGGTTCTCACCAGCTCCATGTACCGAAGGATTAGGAGCAAGGTTGACGGTACCAAAGAGAAGACTAGTTTGGAGAGAATTGAAGAAGATTTAGCTAAAGCACGAGCATCGATTCTCAGAGCAATTCAGTTTGAAAACTACACATCAGAGAAAGTACAGAGTTTTGTCCCAAGAGGAAGCATTTACAAAAATCCTTATGCTTTTCACCAGTTGAGTTTTACGAGTCACCTAGAAATGATGAAGAGGTTCAAGATGTGGAGCTATGAGGAAGGAGAACAACCCTTGGTCCATTTTGGTCCTATGAATGATATATATGGCATTGAAGGACACTTCATAGATGAAATAGAAAGGGAGGGGAGCCCATTTAGGGCTACACATCCTGATGAGGCACACATGTTTTTCCTCCCATTTAGTGTAGCTAACATTGTTCACTATGTTTACTTGCCTATCACTAAAAAACAGGACTACCACCGTGATCGTCTACAACAGATTACCAGGGACTACATTGGCGTTGTGGCACATAAGTATCCCTATTGGAATAGGAGCAAAGGTGCCGACCATTTTATGGCTTCATGTCACGATTGGGCACCAGAGATTTCAGCTGGCCAATCGAAGCTTTTCAAAAACTTCATTAGAGTGCTTTGCAACGCCAACACCTCTGAAGGGTTCCAACCTAAGAGAGATGTTCCATTACCTGAAATATTTGTACCTTCTGGAAAGCTCGGTCCCCCCAATTTGGGTCAGGCTCCAAACAATCGTCGAATTCTGGCCTTCTTTGCTGGTAGAGTTCATGGACCGATTCGACCAATCTTGCTCGAGCATTGGAAGGACAAAGATGACGAAATTCAAGTCCACGAGAAGCTTCCCAAGGGCATGAACTACACGGCATTAATGGGACAAAGCAAGTTTTGCTTGTGCCCTAGTGGTTTTGAAGTGGCAAGCCCTAGAGTTGTGGAGGCATTTTATGCAGGGTGTGTTCCGGTGTTAATTAACGACAACTACACATTACCCTTTAGTGATGTCCTTGATTGGAGCCAATTTTCAATACAAATTCCCGTCGCGAAAATACAAGAAATCAAGACCATCTTACAAGCAATTCCAAATGAGGAATACCAAAAGATGCAGAGGAGGGTTTTAAAAGTTCGGAGGCATTTTGTTCTCAACAAGCCGGCTAAGCCATTTGATGTGATTCACATGGTACTTCATTCAGTGTGGTTGAGACGACTTAATTTTAAGCTTGGAACTTGA

Protein Analysis

481

Amino Acids

55.38

Weight (kDa)

9.16

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 145 - 432 7.6e-61 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 248
AccB1I GGYRCC 3 cut(s) 248, 749, 784
AccB7I CCANNNNNTGG 1 cut(s) 763
AccI GTMKAC 1 cut(s) 679
AccII CGCG 1 cut(s) 1259
AcoI YGGCCR 1 cut(s) 802
AcsI RAATTY 3 cut(s) 960, 1041, 1248
AcuI CTGAAG 1 cut(s) 879
AfaI GTAC 5 cut(s) 221, 250, 354, 906, 1398
AfiI CCNNNNNNNGG 5 cut(s) 565, 763, 861, 934, 935
AflIII ACRYGT 2 cut(s) 181, 591
AgsI TTSAA 8 cut(s) 281, 332, 448, 521, 820, 1046, 1130, 1242
AhlI ACTAGT 1 cut(s) 263
AjnI CCWGG 1 cut(s) 692
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
Alw26I GTCTC 1 cut(s) 1411
Ama87I CYCGRG 1 cut(s) 1013
AoxI GGCC 2 cut(s) 802, 966
ApoI RAATTY 3 cut(s) 960, 1041, 1248
ArsI GACNNNNNNTTYG 2 cut(s) 1032, 1064
AseI ATTAAT 1 cut(s) 1088
Asp700I GAANNNNTTC 2 cut(s) 443, 815
Asp718I GGTACC 1 cut(s) 248
AspS9I GGNCC 4 cut(s) 484, 494, 923, 992
AsuHPI GGTGA 3 cut(s) 199, 395, 416
AvaI CYCGRG 1 cut(s) 1013
AvaII GGWCC 4 cut(s) 484, 494, 923, 992
BaeGI GKGCMC 2 cut(s) 787, 1118
BaeI ACNNNNGTAYC 2 cut(s) 707, 740
BalI TGGCCA 1 cut(s) 804
BanI GGYRCC 3 cut(s) 248, 749, 784
BanII GRGCYC 1 cut(s) 560
BauI CACGAG 2 cut(s) 300, 1052
BbsI GAAGAC 2 cut(s) 47, 266
BccI CCATC 3 cut(s) 108, 181, 1289
BceAI ACGGC 1 cut(s) 1098
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BciT130I CCWGG 1 cut(s) 694
BciVI GTATCC 2 cut(s) 130, 735
BcoDI GTCTC 1 cut(s) 1411
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 4 cut(s) 264, 428, 1119, 1143
BfuI GTATCC 2 cut(s) 130, 735
BlpI GCTNAGC 1 cut(s) 1371
Bme1390I CCNGG 1 cut(s) 694
Bme18I GGWCC 4 cut(s) 484, 494, 923, 992
BmeT110I CYCGRG 1 cut(s) 1013
BmgT120I GGNCC 4 cut(s) 484, 494, 923, 992
BmiI GGNNCC 8 cut(s) 250, 557, 751, 786, 866, 925, 945, 1232
BmrFI CCNGG 1 cut(s) 694
BmsI GCATC 2 cut(s) 314, 1308
BpiI GAAGAC 2 cut(s) 47, 266
BpmI CTGGAG 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 1371
Bsa29I ATCGAT 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 480, 693, 1065
BsaWI WCCGGW 1 cut(s) 1177
BsaXI ACNNNNNCTCC 2 cut(s) 733, 763
Bsc4I CCNNNNNNNGG 5 cut(s) 565, 763, 861, 934, 935
Bse118I RCCGGY 1 cut(s) 1366
Bse1I ACTGG 2 cut(s) 116, 406
BseBI CCWGG 1 cut(s) 694
BseCI ATCGAT 1 cut(s) 308
BseDI CCNNGG 3 cut(s) 480, 693, 1065
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 5 cut(s) 565, 763, 861, 934, 935
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 2 cut(s) 116, 406
BseRI GAGGAG 1 cut(s) 1339
BseSI GKGCMC 2 cut(s) 787, 1118
BsgI GTGCAG 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 1259
BshFI GGCC 2 cut(s) 804, 968
BshNI GGYRCC 3 cut(s) 248, 749, 784
BshVI ATCGAT 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 1013
BsiSI CCGG 2 cut(s) 1178, 1367
BslFI GGGAC 4 cut(s) 350, 710, 909, 1107
BslI CCNNNNNNNGG 5 cut(s) 565, 763, 861, 934, 935
BsmAI GTCTC 1 cut(s) 1411
BsmBI CGTCTC 1 cut(s) 1411
BsmFI GGGAC 4 cut(s) 350, 710, 909, 1107
BsnI GGCC 2 cut(s) 804, 968
BsoBI CYCGRG 1 cut(s) 1013
Bsp1286I GDGCHC 3 cut(s) 560, 787, 1118
Bsp143I GATC 1 cut(s) 673
Bsp1720I GCTNAGC 1 cut(s) 1371
Bsp68I TCGCGA 1 cut(s) 1259
BspANI GGCC 2 cut(s) 804, 968
BspCNI CTCAG 1 cut(s) 327
BspDI ATCGAT 1 cut(s) 308
BspFNI CGCG 1 cut(s) 1259
BspLI GGNNCC 8 cut(s) 250, 557, 751, 786, 866, 925, 945, 1232
BspT107I GGYRCC 3 cut(s) 248, 749, 784
BsrFI RCCGGY 1 cut(s) 1366
BsrI ACTGG 2 cut(s) 116, 406
BssAI RCCGGY 1 cut(s) 1366
BssECI CCNNGG 3 cut(s) 480, 693, 1065
BssMI GATC 1 cut(s) 673
BssSI CACGAG 2 cut(s) 300, 1052
BssT1I CCWWGG 2 cut(s) 480, 1065
Bst2BI CACGAG 2 cut(s) 300, 1052
Bst2UI CCWGG 1 cut(s) 694
Bst4CI ACNGT 2 cut(s) 248, 671
Bst6I CTCTTC 1 cut(s) 434
BstAPI GCANNNNNTGC 2 cut(s) 1107, 1163
BstC8I GCNNGC 3 cut(s) 802, 1138, 1368
BstDEI CTNAG 4 cut(s) 104, 314, 873, 1371
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 1 cut(s) 1259
BstKTI GATC 1 cut(s) 676
BstMAI GTCTC 1 cut(s) 1411
BstMBI GATC 1 cut(s) 673
BstMWI GCNNNNNNNGC 5 cut(s) 18, 974, 1107, 1163, 1372
BstNI CCWGG 1 cut(s) 694
BstNSI RCATGY 2 cut(s) 185, 595
BstSCI CCNGG 1 cut(s) 692
BstSLI GKGCMC 2 cut(s) 787, 1118
BstUI CGCG 1 cut(s) 1259
BstV2I GAAGAC 2 cut(s) 47, 266
Bsu15I ATCGAT 1 cut(s) 308
BsuI GTATCC 2 cut(s) 130, 735
BsuRI GGCC 2 cut(s) 804, 968
BsuTUI ATCGAT 1 cut(s) 308
BtsCI GGATG 1 cut(s) 574
BtsIMutI CAGTG 1 cut(s) 1413
BtuMI TCGCGA 1 cut(s) 1259
Cac8I GCNNGC 3 cut(s) 802, 1138, 1368
Cfr10I RCCGGY 1 cut(s) 1366
Cfr13I GGNCC 4 cut(s) 484, 494, 923, 992
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 5 cut(s) 220, 249, 353, 905, 1397
CviAII CATG 7 cut(s) 182, 217, 592, 771, 989, 1072, 1393
CviQI GTAC 5 cut(s) 220, 249, 353, 905, 1397
DdeI CTNAG 4 cut(s) 104, 314, 873, 1371
DpnI GATC 1 cut(s) 675
DpnII GATC 1 cut(s) 673
DraI TTTAAA 1 cut(s) 1335
EaeI YGGCCR 1 cut(s) 802
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 2 cut(s) 480, 1065
Eco24I GRGCYC 1 cut(s) 560
Eco47I GGWCC 4 cut(s) 484, 494, 923, 992
Eco57I CTGAAG 1 cut(s) 879
Eco88I CYCGRG 1 cut(s) 1013
EcoRI GAATTC 1 cut(s) 960
EcoRII CCWGG 1 cut(s) 692
EcoT14I CCWWGG 2 cut(s) 480, 1065
EcoT38I GRGCYC 1 cut(s) 560
ErhI CCWWGG 2 cut(s) 480, 1065
Esp3I CGTCTC 1 cut(s) 1411
FaeI CATG 7 cut(s) 185, 220, 595, 774, 992, 1075, 1396
FalI AAGNNNNNCTT 4 cut(s) 1094, 1126, 1268, 1300
FaqI GGGAC 4 cut(s) 350, 710, 909, 1107
FatI CATG 7 cut(s) 181, 216, 591, 770, 988, 1071, 1392
FblI GTMKAC 1 cut(s) 679
FokI GGATG 1 cut(s) 561
FriOI GRGCYC 1 cut(s) 560
FspBI CTAG 4 cut(s) 264, 428, 1119, 1143
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 804, 968
HapII CCGG 2 cut(s) 1178, 1367
Hin1II CATG 7 cut(s) 185, 220, 595, 774, 992, 1075, 1396
HincII GTYRAC 2 cut(s) 39, 244
HindII GTYRAC 2 cut(s) 39, 244
HindIII AAGCTT 4 cut(s) 10, 812, 1058, 1433
HinfI GANTC 5 cut(s) 4, 310, 421, 997, 1387
HpaI GTTAAC 1 cut(s) 39
HpaII CCGG 2 cut(s) 1178, 1367
HphI GGTGA 3 cut(s) 199, 395, 416
Hpy166II GTNNAC 6 cut(s) 39, 244, 628, 637, 680, 1051
Hpy188I TCNGA 5 cut(s) 94, 317, 346, 859, 1344
Hpy188III TCNNGA 7 cut(s) 149, 448, 578, 776, 912, 1258, 1276
Hpy8I GTNNAC 6 cut(s) 39, 244, 628, 637, 680, 1051
Hpy99I CGWCG 2 cut(s) 960, 1259
HpyAV CCTTC 7 cut(s) 219, 461, 515, 854, 918, 979, 1018
HpyCH4III ACNGT 2 cut(s) 248, 671
HpyCH4V TGCA 4 cut(s) 26, 843, 1166, 1321
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 974, 1107, 1163, 1372
HpyF3I CTNAG 4 cut(s) 104, 314, 873, 1371
Hsp92II CATG 7 cut(s) 185, 220, 595, 774, 992, 1075, 1396
KpnI GGTACC 1 cut(s) 252
KroI GCCGGC 1 cut(s) 1366
KroNI GCCGGC 1 cut(s) 1368
KspAI GTTAAC 1 cut(s) 39
Kzo9I GATC 1 cut(s) 673
LmnI GCTCC 7 cut(s) 218, 234, 456, 555, 741, 949, 1230
LweI GCATC 2 cut(s) 314, 1308
MaeI CTAG 4 cut(s) 264, 428, 1119, 1143
MaeIII GTNAC 2 cut(s) 422, 773
MalI GATC 1 cut(s) 675
MboI GATC 1 cut(s) 673
MboII GAAGA 7 cut(s) 47, 55, 67, 271, 293, 296, 451
MhlI GDGCHC 3 cut(s) 560, 787, 1118
MlsI TGGCCA 1 cut(s) 804
MluNI TGGCCA 1 cut(s) 804
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 892
Mox20I TGGCCA 1 cut(s) 804
MroNI GCCGGC 1 cut(s) 1366
MroXI GAANNNNTTC 2 cut(s) 443, 815
MscI TGGCCA 1 cut(s) 804
MseI TTAA 7 cut(s) 38, 1088, 1184, 1188, 1334, 1425, 1431
MslI CAYNNNNRTG 2 cut(s) 579, 833
Msp20I TGGCCA 1 cut(s) 804
MspA1I CMGCKG 1 cut(s) 800
MspI CCGG 2 cut(s) 1178, 1367
MspR9I CCNGG 1 cut(s) 694
MvaI CCWGG 1 cut(s) 694
MvnI CGCG 1 cut(s) 1259
MwoI GCNNNNNNNGC 5 cut(s) 18, 974, 1107, 1163, 1372
NaeI GCCGGC 1 cut(s) 1368
NdeII GATC 1 cut(s) 673
NgoMIV GCCGGC 1 cut(s) 1366
NlaIII CATG 7 cut(s) 185, 220, 595, 774, 992, 1075, 1396
NlaIV GGNNCC 8 cut(s) 250, 557, 751, 786, 866, 925, 945, 1232
NmuCI GTSAC 2 cut(s) 422, 773
NruI TCGCGA 1 cut(s) 1259
NspI RCATGY 2 cut(s) 185, 595
PacI TTAATTAA 1 cut(s) 1188
PaeR7I CTCGAG 1 cut(s) 1013
PciI ACATGT 2 cut(s) 181, 591
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PdiI GCCGGC 1 cut(s) 1368
PdmI GAANNNNTTC 2 cut(s) 443, 815
PfeI GAWTC 3 cut(s) 310, 997, 1387
PflMI CCANNNNNTGG 1 cut(s) 763
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PscI ACATGT 2 cut(s) 181, 591
PshBI ATTAAT 1 cut(s) 1088
Psp6I CCWGG 1 cut(s) 692
PspGI CCWGG 1 cut(s) 692
PspN4I GGNNCC 8 cut(s) 250, 557, 751, 786, 866, 925, 945, 1232
PspPI GGNCC 4 cut(s) 484, 494, 923, 992
PspXI VCTCGAGB 1 cut(s) 1013
PvuII CAGCTG 1 cut(s) 800
RruI TCGCGA 1 cut(s) 1259
RsaI GTAC 5 cut(s) 221, 250, 354, 906, 1398
RsaNI GTAC 5 cut(s) 220, 249, 353, 905, 1397
RseI CAYNNNNRTG 2 cut(s) 579, 833
SaqAI TTAA 7 cut(s) 38, 1088, 1184, 1188, 1334, 1425, 1431
Sau3AI GATC 1 cut(s) 673
Sau96I GGNCC 4 cut(s) 484, 494, 923, 992
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 694
SduI GDGCHC 3 cut(s) 560, 787, 1118
SfaNI GCATC 2 cut(s) 314, 1308
Sfr274I CTCGAG 1 cut(s) 1013
SinI GGWCC 4 cut(s) 484, 494, 923, 992
SlaI CTCGAG 1 cut(s) 1013
SmiMI CAYNNNNRTG 2 cut(s) 579, 833
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
SpeI ACTAGT 1 cut(s) 263
SspI AATATT 1 cut(s) 900
SspMI CTAG 4 cut(s) 264, 428, 1119, 1143
StyD4I CCNGG 1 cut(s) 692
StyI CCWWGG 2 cut(s) 480, 1065
TaaI ACNGT 2 cut(s) 248, 671
TaqI TCGA 7 cut(s) 7, 176, 308, 809, 958, 1000, 1014
TaqII GACCGA 2 cut(s) 911, 1009
TatI WGTACW 1 cut(s) 352
TfiI GAWTC 3 cut(s) 310, 997, 1387
Tru1I TTAA 7 cut(s) 38, 1088, 1184, 1188, 1334, 1425, 1431
Tru9I TTAA 7 cut(s) 38, 1088, 1184, 1188, 1334, 1425, 1431
TscAI CASTG 1 cut(s) 1413
TseFI GTSAC 2 cut(s) 422, 773
Tsp45I GTSAC 2 cut(s) 422, 773
TspDTI ATGAA 9 cut(s) 452, 515, 520, 552, 759, 817, 977, 1088, 1391
TspRI CASTG 1 cut(s) 1413
Van91I CCANNNNNTGG 1 cut(s) 763
VpaK11BI GGWCC 4 cut(s) 484, 494, 923, 992
VspI ATTAAT 1 cut(s) 1088
XapI RAATTY 3 cut(s) 960, 1041, 1248
XceI RCATGY 2 cut(s) 185, 595
XhoI CTCGAG 1 cut(s) 1013
XmiI GTMKAC 1 cut(s) 679
XmnI GAANNNNTTC 2 cut(s) 443, 815
XspI CTAG 4 cut(s) 264, 428, 1119, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.