Rorug01G0476400

N-alpha-acetyltransferase 35, NatC auxiliary

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000987
Physical Location & Seq
Forward (+)
56603481 .. 56608268
4788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0476400.1

Sequence Viewer

Length: 789 bp
ATGAGTGGACGATTTTCTCGCACAATCTATGTCGGCAACCTACCCTCAGATATAAGAGAACGGGAGGTTGAAGATTTATTCTACAAGTATGGCCGCATTTTGGATATTGAATTGAAGGTTCCACCTCGCCCTCCATGCTATAGTTTTGTTGAGTTTGAGAGTTCTCGGGATGCAGAAGATGCAATTAGGGGTCGTGATGGGTACAACTTTGATGGCTGTCGTTTAAGGGTTGAGCTTGCCCATGGTGGTAGTAGGGGCCCGCCACCTAGTGATCGTCGTGGTGGATATGGTGGAGGCAGTAGCAGAGGAGGCAGCAGTGGGGGTCGATTTGGTGTCTCACGTCATTCTGAATTTCGAGTTATTGTTCGTGGCCTCCCTTCTTCTGCTTCATGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCCGAGGTTTGTCGTGACAGTGAAGGGACTTATGGCTTGGTTGATTATAACAATTATGATGACATGAAATATGCTGTTCGGGAACTTCATGATACTGAATTTAAAAATCCTTGGGCAAGATCTTATATTCGGGTTAAAGTGTATGAAAGCAGCAGTCCCTCTAGGAGTCGGAGCAGAAGCCGTAGTGTAAGAAGGAATAAGAGCAATTCTTTGGAGCGATCTGTTTCTAGATCAGTTTCAAGATCTAGGTCTGCATCTCCGGTCAAACCTTCCAGGCCAAGATCAAGATCAAGATCAATGTCAAGATCAAGGTCAGGGTCTCCCCGCCCGGCGCGGTCAGATAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mak10

Protein Analysis

262

Amino Acids

29.53

Weight (kDa)

10.25

Isoelectric Point (pI)

83.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 76 1.5e-17 RNA recognition motif
RRM_1 PF00076 120 - 182 1.2e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
AccII CGCG 1 cut(s) 772
AciI CCGC 4 cut(s) 94, 260, 763, 772
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 2 cut(s) 350, 536
AdeI CACNNNGTG 1 cut(s) 269
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 5 cut(s) 71, 110, 115, 403, 678
AjiI CACGTC 1 cut(s) 341
AjnI CCWGG 1 cut(s) 710
AluBI AGCT 2 cut(s) 235, 422
AluI AGCT 2 cut(s) 235, 422
Alw26I GTCTC 2 cut(s) 340, 762
AlwI GGATC 1 cut(s) 414
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 4 cut(s) 91, 256, 370, 713
ApaI GGGCCC 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 312, 588
ApoI RAATTY 2 cut(s) 350, 536
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 2 cut(s) 256, 257
AsuC2I CCSGG 1 cut(s) 767
AsuHPI GGTGA 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 324, 600
BccI CCATC 2 cut(s) 191, 206
BceAI ACGGC 1 cut(s) 603
BciT130I CCWGG 1 cut(s) 712
BcnI CCSGG 1 cut(s) 767
BcoDI GTCTC 2 cut(s) 340, 762
BfaI CTAG 4 cut(s) 267, 600, 666, 684
BfmI CTRYAG 1 cut(s) 139
BglII AGATCT 2 cut(s) 557, 680
BisI GCNGC 3 cut(s) 94, 313, 589
BlsI GCNGC 3 cut(s) 95, 314, 590
Bme1390I CCNGG 2 cut(s) 712, 767
BmeT110I CYCGRG 1 cut(s) 165
BmgBI CACGTC 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 256, 257
BmiI GGNNCC 3 cut(s) 120, 257, 258
BmrFI CCNGG 2 cut(s) 712, 767
BmsI GCATC 3 cut(s) 160, 169, 701
BpuMI CCSGG 1 cut(s) 767
BsaBI GATNNNNATC 2 cut(s) 724, 730
BsaI GGTCTC 1 cut(s) 762
BsaJI CCNNGG 3 cut(s) 241, 441, 548
BsaWI WCCGGW 1 cut(s) 697
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse8I GATNNNNATC 2 cut(s) 724, 730
BseBI CCWGG 1 cut(s) 712
BseDI CCNNGG 3 cut(s) 241, 441, 548
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 2 cut(s) 724, 730
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 2 cut(s) 324, 600
Bsh1236I CGCG 1 cut(s) 772
BshFI GGCC 4 cut(s) 93, 258, 372, 715
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 2 cut(s) 698, 767
BslFI GGGAC 2 cut(s) 478, 579
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 2 cut(s) 340, 762
BsmFI GGGAC 2 cut(s) 478, 579
BsnI GGCC 4 cut(s) 93, 258, 372, 715
Bso31I GGTCTC 1 cut(s) 762
BsoBI CYCGRG 1 cut(s) 165
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 260
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 4 cut(s) 94, 260, 763, 772
BspANI GGCC 4 cut(s) 93, 258, 372, 715
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 772
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 120, 257, 258
BspPI GGATC 1 cut(s) 414
BspTNI GGTCTC 1 cut(s) 762
BssECI CCNNGG 3 cut(s) 241, 441, 548
BssT1I CCWWGG 2 cut(s) 241, 548
Bst2UI CCWGG 1 cut(s) 712
Bst4CI ACNGT 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 237, 260
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 772
BstHHI GCGC 1 cut(s) 772
BstMAI GTCTC 2 cut(s) 340, 762
BstMWI GCNNNNNNNGC 3 cut(s) 135, 179, 309
BstNI CCWGG 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 710, 765
BstSFI CTRYAG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 772
BstV1I GCAGC 2 cut(s) 324, 600
BstX2I RGATCY 2 cut(s) 557, 680
BstYI RGATCY 2 cut(s) 557, 680
BsuRI GGCC 4 cut(s) 93, 258, 372, 715
BtgI CCRYGG 1 cut(s) 241
BtrI CACGTC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 322, 463
Cac8I GCNNGC 2 cut(s) 237, 260
CciI TCATGA 1 cut(s) 526
CfoI GCGC 1 cut(s) 772
Cfr13I GGNCC 2 cut(s) 256, 257
Csp6I GTAC 1 cut(s) 202
CviAII CATG 5 cut(s) 135, 242, 390, 502, 527
CviJI RGCY 9 cut(s) 93, 216, 235, 258, 372, 422, 474, 618, 715
CviKI_1 RGCY 9 cut(s) 93, 216, 235, 258, 372, 422, 474, 618, 715
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 46
DraI TTTAAA 1 cut(s) 541
DraIII CACNNNGTG 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 241, 548
Eco24I GRGCYC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 710
EcoT14I CCWWGG 2 cut(s) 241, 548
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 2 cut(s) 241, 548
FaeI CATG 5 cut(s) 138, 245, 393, 505, 530
FaqI GGGAC 2 cut(s) 478, 579
FatI CATG 5 cut(s) 134, 241, 389, 501, 526
FauI CCCGC 2 cut(s) 267, 770
FauNDI CATATG 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 94, 313, 589
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 94, 313, 589
FspBI CTAG 4 cut(s) 267, 600, 666, 684
GlaI GCGC 1 cut(s) 771
GluI GCNGC 3 cut(s) 94, 313, 589
HaeIII GGCC 4 cut(s) 93, 258, 372, 715
HapII CCGG 2 cut(s) 698, 767
HhaI GCGC 1 cut(s) 772
Hin1II CATG 5 cut(s) 138, 245, 393, 505, 530
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HinfI GANTC 1 cut(s) 604
HpaII CCGG 2 cut(s) 698, 767
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 4 cut(s) 49, 349, 609, 778
Hpy8I GTNNAC 1 cut(s) 8
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 6 cut(s) 109, 387, 397, 455, 624, 717
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 3 cut(s) 173, 182, 692
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 179, 309
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 5 cut(s) 138, 245, 393, 505, 530
HspAI GCGC 1 cut(s) 770
LmnI GCTCC 2 cut(s) 609, 652
LpnPI CCDG 6 cut(s) 408, 697, 711, 724, 738, 780
Lsp1109I GCAGC 2 cut(s) 324, 600
LweI GCATC 3 cut(s) 160, 169, 701
MaeI CTAG 4 cut(s) 267, 600, 666, 684
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 452
MboII GAAGA 3 cut(s) 83, 188, 372
MflI RGATCY 2 cut(s) 557, 680
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 6 cut(s) 110, 183, 350, 490, 536, 643
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 1 cut(s) 587
MseI TTAA 3 cut(s) 224, 540, 573
MspI CCGG 2 cut(s) 698, 767
MspR9I CCNGG 2 cut(s) 712, 767
MvaI CCWGG 1 cut(s) 712
MvnI CGCG 1 cut(s) 772
MwoI GCNNNNNNNGC 3 cut(s) 135, 179, 309
NciI CCSGG 1 cut(s) 767
NcoI CCATGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 411
NlaIII CATG 5 cut(s) 138, 245, 393, 505, 530
NlaIV GGNNCC 3 cut(s) 120, 257, 258
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 452
PagI TCATGA 1 cut(s) 526
PkrI GCNGC 3 cut(s) 95, 314, 590
PleI GAGTC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 612
PsiI TTATAA 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 710
PspGI CCWGG 1 cut(s) 710
PspN4I GGNNCC 3 cut(s) 120, 257, 258
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 256, 257
PsuI RGATCY 2 cut(s) 557, 680
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 3 cut(s) 224, 540, 573
SatI GCNGC 3 cut(s) 94, 313, 589
Sau96I GGNCC 2 cut(s) 256, 257
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 2 cut(s) 712, 767
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 3 cut(s) 160, 169, 701
SfcI CTRYAG 1 cut(s) 139
Sse9I AATT 6 cut(s) 110, 183, 350, 490, 536, 643
SsiI CCGC 4 cut(s) 94, 260, 763, 772
SspMI CTAG 4 cut(s) 267, 600, 666, 684
StyD4I CCNGG 2 cut(s) 710, 765
StyI CCWWGG 2 cut(s) 241, 548
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 325, 355
TasI AATT 6 cut(s) 110, 183, 350, 490, 536, 643
TauI GCSGC 1 cut(s) 96
Tru1I TTAA 3 cut(s) 224, 540, 573
Tru9I TTAA 3 cut(s) 224, 540, 573
TscAI CASTG 2 cut(s) 322, 463
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 312, 588
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 4 cut(s) 378, 515, 518, 597
TspRI CASTG 2 cut(s) 322, 463
XapI RAATTY 2 cut(s) 350, 536
XbaI TCTAGA 1 cut(s) 665
XspI CTAG 4 cut(s) 267, 600, 666, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.