RLG00000025942

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000987
Physical Location & Seq
Forward (+)
49353567 .. 49356666
3100 bp
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UTR
Exon/CDS
Intron
RLM00000025942

Sequence Viewer

Length: 1482 bp
ATGGCAGACTCAGATTATCGTTCTCCAATAGTACTCTCTGTAACTCTCCTCCTCCTCTTCGTTACGGTCCTCTTCTTCTCTCCATTAAACCGAAACCAATATCTTTCGCTCAATCTTTTATCTCCTTCCTCCTCCCTATCTAACTCTTCTTCTACTCATCATAACCAACAAACCACCGACAACGACAAAGCCTTGCATGTCGTTTCAGCACCGGCACCGGCACCGGCGCCGTCGCTTCCGCCGTTTCACCAACATGGGCCTCCCTCCACTCTCACTTTGCCTCAAGTACTCAGTCACAGTGTCAAAAACAAGAGCAAAACGCAAAGGATTGAAGAAGAGTTGGCCAGAGCAAGAGCCATTATTCGCAAAGCTATTCTGACAAAGAATTACACCTCTGACAGGAATGAGATTTACATCCCAAGAGGAAGTGTTTACAGAAATCCCTATGCATTTCACCAGAGTCATATAGAAATGGTCAAGACATTCAAGGTCTGGGCCTATAGGGAAGGAGAAGTACCAATGGTCCATGATGGGCCAACTACGTACCTCTACTCCATAGAGGGCCAGTTCATTTTTGAGATGGAAAGTCGGCCTAGCCCTTTCATGGCCAAGCATCCTGATGAGGCTCATACATTCTTCTTACCATTGAGTGTGTCCAAGATTACTGACTTCCTGTACAGACCTCACCATGAGACATTTTTTCATCGACTGGATCGCGTCTTCACCGACTACATTCATGTTGTACAAGAAAAGTATCCTTACTGGAATAGGAGTGGTGGAGCAGACCATTTTATGGTCTCATGTCATGATTGGGCATCACTTATCCAACGTGATGACCCCAGGCCGTACAAGAATCTGATAAAGGTGTTATGCAATGCAAACATCTCTGAAGGGTTTAAGCCTACTAGAGATGTCTCAATACCAGAATACAACTTAAAACGCTACGAGCTTGGCCCGCCCCGTTTTGGGCTACCCCCTGATGACCGTACTGTCCTTGCTTTCTTTGCTGGTGCAGCCCATGGAGACATAAGGAGCATTTTGTTTGAGCATTGGAAGGAAAAAGATGGTGAAGTTCGGGTCTATGAAAATCTTCCCAAGACTATAGACTACCACAAGATCATGGGACAAACCAAGTTTTGCTTGTGCCCGAGTGGTTCTGAAGTGGCAAGTCCTAGAGTAGTGGAGGCAATGAATGCAGGGTGTGTCCCGGTGCTAATTTCCGATTCCTATGCAATACCTTTTGCTGATGTTCTTAACTGGAACAAGTTTTCTATACAAATTCCGCCCAAGAGAATATCAGAAATCAAGACAATATTGAAGGCTGTTCCACACAAAAGGTACTTGACATTGCAGAAGAGGGTGATGCAAGTGAGAAGGCATTTTGAGCTGAACCGACCAGCTAAGCCATTTGATGTATTCCATATGGTGCTTCACTCAGTGTGGCTTAAAAGGCTCAACATTCGATTACCTGATAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

494

Amino Acids

56.8

Weight (kDa)

9.33

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 144 - 441 4.5e-55 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 989
AccB1I GGYRCC 3 cut(s) 214, 220, 226
AccB7I CCANNNNNTGG 1 cut(s) 793
AccII CGCG 1 cut(s) 717
AciI CCGC 3 cut(s) 239, 956, 1283
AclWI GGATC 1 cut(s) 720
AcoI YGGCCR 2 cut(s) 342, 606
AcsI RAATTY 2 cut(s) 1278, 1475
AcuI CTGAAG 2 cut(s) 909, 1179
AcyI GRCGYC 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 1438
AfaI GTAC 9 cut(s) 33, 288, 516, 545, 677, 744, 848, 988, 1340
AfiI CCNNNNNNNGG 5 cut(s) 399, 604, 793, 965, 966
AgsI TTSAA 3 cut(s) 332, 487, 1318
AjnI CCWGG 1 cut(s) 839
AluBI AGCT 4 cut(s) 371, 949, 1387, 1400
AluI AGCT 4 cut(s) 371, 949, 1387, 1400
Alw26I GTCTC 4 cut(s) 686, 802, 919, 1017
AlwI GGATC 1 cut(s) 720
Ama87I CYCGRG 1 cut(s) 1147
AoxI GGCC 9 cut(s) 257, 342, 495, 533, 562, 590, 606, 842, 952
ApeKI GCWGC 1 cut(s) 1013
ApoI RAATTY 2 cut(s) 1278, 1475
Asp700I GAANNNNTTC 1 cut(s) 1089
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 7 cut(s) 67, 257, 495, 523, 533, 562, 953
AsuC2I CCSGG 1 cut(s) 1208
AsuHPI GGTGA 6 cut(s) 239, 446, 677, 715, 1079, 1372
AvaI CYCGRG 1 cut(s) 1147
AvaII GGWCC 2 cut(s) 67, 523
BaeGI GKGCMC 1 cut(s) 1148
BalI TGGCCA 2 cut(s) 344, 608
BanI GGYRCC 3 cut(s) 214, 220, 226
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
BbsI GAAGAC 1 cut(s) 712
BbvI GCAGC 1 cut(s) 1025
BccI CCATC 3 cut(s) 524, 574, 1058
BceAI ACGGC 3 cut(s) 214, 226, 829
BcgI CGANNNNNNTGC 2 cut(s) 1211, 1245
BciT130I CCWGG 1 cut(s) 841
BciVI GTATCC 1 cut(s) 765
BcnI CCSGG 1 cut(s) 1208
BcoDI GTCTC 4 cut(s) 686, 802, 919, 1017
BfaI CTAG 3 cut(s) 594, 906, 1173
BfmI CTRYAG 2 cut(s) 499, 1101
BfoI RGCGCY 1 cut(s) 230
BfuI GTATCC 1 cut(s) 765
BisI GCNGC 1 cut(s) 1014
BlpI GCTNAGC 1 cut(s) 1401
BlsI GCNGC 1 cut(s) 1015
BmcAI AGTACT 2 cut(s) 33, 288
Bme1390I CCNGG 2 cut(s) 841, 1208
Bme18I GGWCC 2 cut(s) 67, 523
BmeT110I CYCGRG 1 cut(s) 1147
BmgT120I GGNCC 7 cut(s) 67, 257, 495, 523, 533, 562, 953
BmiI GGNNCC 3 cut(s) 216, 222, 228
BmrFI CCNGG 2 cut(s) 841, 1208
BmsI GCATC 3 cut(s) 622, 824, 1353
BpiI GAAGAC 1 cut(s) 712
Bpu1102I GCTNAGC 1 cut(s) 1401
BpuEI CTTGAG 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 1208
BsaAI YACGTR 1 cut(s) 543
BsaBI GATNNNNATC 1 cut(s) 413
BsaHI GRCGYC 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 802
BsaJI CCNNGG 2 cut(s) 839, 1018
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 5 cut(s) 399, 604, 793, 965, 966
Bse118I RCCGGY 3 cut(s) 211, 217, 223
Bse1I ACTGG 4 cut(s) 565, 714, 767, 1262
Bse3DI GCAATG 3 cut(s) 880, 1194, 1346
Bse8I GATNNNNATC 1 cut(s) 413
BseBI CCWGG 1 cut(s) 841
BseDI CCNNGG 2 cut(s) 839, 1018
BseGI GGATG 2 cut(s) 414, 613
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 5 cut(s) 399, 604, 793, 965, 966
BseMI GCAATG 3 cut(s) 880, 1194, 1346
BseMII CTCAG 3 cut(s) 24, 304, 1449
BseNI ACTGG 4 cut(s) 565, 714, 767, 1262
BseRI GAGGAG 4 cut(s) 38, 41, 44, 121
BseSI GKGCMC 1 cut(s) 1148
BseXI GCAGC 1 cut(s) 1025
BsgI GTGCAG 1 cut(s) 1032
Bsh1236I CGCG 1 cut(s) 717
BshFI GGCC 9 cut(s) 259, 344, 497, 535, 564, 592, 608, 844, 954
BshNI GGYRCC 3 cut(s) 214, 220, 226
BsiHKCI CYCGRG 1 cut(s) 1147
BsiSI CCGG 4 cut(s) 212, 218, 224, 1208
BslFI GGGAC 2 cut(s) 1137, 1190
BslI CCNNNNNNNGG 5 cut(s) 399, 604, 793, 965, 966
BsmAI GTCTC 4 cut(s) 686, 802, 919, 1017
BsmFI GGGAC 2 cut(s) 1137, 1190
BsmI GAATGC 1 cut(s) 1198
BsnI GGCC 9 cut(s) 259, 344, 497, 535, 564, 592, 608, 844, 954
Bso31I GGTCTC 1 cut(s) 802
BsoBI CYCGRG 1 cut(s) 1147
Bsp1286I GDGCHC 1 cut(s) 1148
Bsp1407I TGTACA 2 cut(s) 675, 742
Bsp143I GATC 2 cut(s) 712, 1116
Bsp1720I GCTNAGC 1 cut(s) 1401
Bsp19I CCATGG 1 cut(s) 1018
BspACI CCGC 3 cut(s) 239, 956, 1283
BspANI GGCC 9 cut(s) 259, 344, 497, 535, 564, 592, 608, 844, 954
BspCNI CTCAG 3 cut(s) 23, 303, 1448
BspFNI CGCG 1 cut(s) 717
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 3 cut(s) 216, 222, 228
BspPI GGATC 1 cut(s) 720
BspT107I GGYRCC 3 cut(s) 214, 220, 226
BspTNI GGTCTC 1 cut(s) 802
BsrDI GCAATG 3 cut(s) 880, 1194, 1346
BsrFI RCCGGY 3 cut(s) 211, 217, 223
BsrGI TGTACA 2 cut(s) 675, 742
BsrI ACTGG 4 cut(s) 565, 714, 767, 1262
BssAI RCCGGY 3 cut(s) 211, 217, 223
BssECI CCNNGG 2 cut(s) 839, 1018
BssMI GATC 2 cut(s) 712, 1116
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 1018
Bst2UI CCWGG 1 cut(s) 841
Bst4CI ACNGT 4 cut(s) 67, 299, 986, 991
Bst6I CTCTTC 5 cut(s) 62, 77, 151, 330, 1349
BstACI GRCGYC 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 1193
BstAUI TGTACA 2 cut(s) 675, 742
BstBAI YACGTR 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 956
BstDEI CTNAG 4 cut(s) 10, 290, 1401, 1435
BstDSI CCRYGG 1 cut(s) 1018
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 2 cut(s) 414, 613
BstFNI CGCG 1 cut(s) 717
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 2 cut(s) 715, 1119
BstMAI GTCTC 4 cut(s) 686, 802, 919, 1017
BstMBI GATC 2 cut(s) 712, 1116
BstMWI GCNNNNNNNGC 6 cut(s) 955, 1004, 1013, 1193, 1384, 1450
BstNI CCWGG 1 cut(s) 841
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 839, 1206
BstSFI CTRYAG 2 cut(s) 499, 1101
BstSLI GKGCMC 1 cut(s) 1148
BstSNI TACGTA 1 cut(s) 543
BstUI CGCG 1 cut(s) 717
BstV1I GCAGC 1 cut(s) 1025
BstV2I GAAGAC 1 cut(s) 712
BsuI GTATCC 1 cut(s) 765
BsuRI GGCC 9 cut(s) 259, 344, 497, 535, 564, 592, 608, 844, 954
BtgI CCRYGG 1 cut(s) 1018
BtsCI GGATG 2 cut(s) 414, 613
BtsIMutI CAGTG 2 cut(s) 304, 1443
Cac8I GCNNGC 1 cut(s) 956
CciI TCATGA 1 cut(s) 805
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 3 cut(s) 211, 217, 223
Cfr13I GGNCC 7 cut(s) 67, 257, 495, 523, 533, 562, 953
CseI GACGC 1 cut(s) 706
Csp6I GTAC 9 cut(s) 32, 287, 515, 544, 676, 743, 847, 987, 1339
CviQI GTAC 9 cut(s) 32, 287, 515, 544, 676, 743, 847, 987, 1339
DdeI CTNAG 4 cut(s) 10, 290, 1401, 1435
DinI GGCGCC 1 cut(s) 228
DpnI GATC 2 cut(s) 714, 1118
DpnII GATC 2 cut(s) 712, 1116
DraIII CACNNNGTG 1 cut(s) 1438
DrdI GACNNNNNNGTC 1 cut(s) 989
DseDI GACNNNNNNGTC 1 cut(s) 989
EaeI YGGCCR 2 cut(s) 342, 606
Eam1104I CTCTTC 5 cut(s) 62, 77, 151, 330, 1349
EarI CTCTTC 5 cut(s) 62, 77, 151, 330, 1349
EciI GGCGGA 2 cut(s) 228, 1272
Eco105I TACGTA 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 1018
Eco31I GGTCTC 1 cut(s) 802
Eco47I GGWCC 2 cut(s) 67, 523
Eco57I CTGAAG 2 cut(s) 909, 1179
Eco88I CYCGRG 1 cut(s) 1147
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 839
EcoT14I CCWWGG 1 cut(s) 1018
EcoT22I ATGCAT 1 cut(s) 451
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 1018
FalI AAGNNNNNCTT 2 cut(s) 1124, 1156
FaqI GGGAC 2 cut(s) 1137, 1190
FauI CCCGC 1 cut(s) 963
FauNDI CATATG 1 cut(s) 1422
Fnu4HI GCNGC 1 cut(s) 1014
FokI GGATG 2 cut(s) 401, 600
Fsp4HI GCNGC 1 cut(s) 1014
FspBI CTAG 3 cut(s) 594, 906, 1173
GlaI GCGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 1014
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 9 cut(s) 259, 344, 497, 535, 564, 592, 608, 844, 954
HapII CCGG 4 cut(s) 212, 218, 224, 1208
HgaI GACGC 1 cut(s) 706
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 227
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 4 cut(s) 8, 460, 853, 1223
HpaII CCGG 4 cut(s) 212, 218, 224, 1208
HphI GGTGA 6 cut(s) 239, 446, 677, 715, 1079, 1372
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 8 cut(s) 13, 378, 397, 858, 889, 1159, 1222, 1300
Hpy188III TCNNGA 4 cut(s) 478, 617, 806, 1306
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 6 cut(s) 135, 500, 884, 1048, 1312, 1368
HpyCH4III ACNGT 4 cut(s) 67, 299, 986, 991
HpyCH4IV ACGT 2 cut(s) 542, 829
HpyCH4V TGCA 9 cut(s) 196, 449, 873, 878, 1013, 1196, 1232, 1351, 1366
HpyF10VI GCNNNNNNNGC 6 cut(s) 955, 1004, 1013, 1193, 1384, 1450
HpyF3I CTNAG 4 cut(s) 10, 290, 1401, 1435
HpySE526I ACGT 2 cut(s) 542, 829
Hsp92I GRCGYC 1 cut(s) 227
HspAI GCGC 1 cut(s) 227
KasI GGCGCC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 712, 1116
LmnI GCTCC 2 cut(s) 779, 1032
Lsp1109I GCAGC 1 cut(s) 1025
LweI GCATC 3 cut(s) 622, 824, 1353
MaeI CTAG 3 cut(s) 594, 906, 1173
MaeII ACGT 2 cut(s) 542, 829
MaeIII GTNAC 3 cut(s) 40, 61, 293
MalI GATC 2 cut(s) 714, 1118
MboI GATC 2 cut(s) 712, 1116
MhlI GDGCHC 1 cut(s) 1148
MlsI TGGCCA 2 cut(s) 344, 608
MluCI AATT 4 cut(s) 385, 1215, 1278, 1475
MluNI TGGCCA 2 cut(s) 344, 608
Mly113I GGCGCC 1 cut(s) 227
MlyI GAGTC 2 cut(s) 2, 469
MmeI TCCRAC 1 cut(s) 850
Mox20I TGGCCA 2 cut(s) 344, 608
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 1089
MscI TGGCCA 2 cut(s) 344, 608
MseI TTAA 5 cut(s) 86, 897, 935, 1254, 1446
MslI CAYNNNNRTG 2 cut(s) 252, 618
Msp20I TGGCCA 2 cut(s) 344, 608
MspI CCGG 4 cut(s) 212, 218, 224, 1208
MspR9I CCNGG 2 cut(s) 841, 1208
Mva1269I GAATGC 1 cut(s) 1198
MvaI CCWGG 1 cut(s) 841
MvnI CGCG 1 cut(s) 717
MwoI GCNNNNNNNGC 6 cut(s) 955, 1004, 1013, 1193, 1384, 1450
NarI GGCGCC 1 cut(s) 227
NciI CCSGG 1 cut(s) 1208
NcoI CCATGG 1 cut(s) 1018
NdeI CATATG 1 cut(s) 1422
NdeII GATC 2 cut(s) 712, 1116
NlaIV GGNNCC 3 cut(s) 216, 222, 228
NmuCI GTSAC 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 1 cut(s) 200
PagI TCATGA 1 cut(s) 805
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PctI GAATGC 1 cut(s) 1198
PdmI GAANNNNTTC 1 cut(s) 1089
PfeI GAWTC 2 cut(s) 853, 1223
PflMI CCANNNNNTGG 1 cut(s) 793
PkrI GCNGC 1 cut(s) 1015
PleI GAGTC 2 cut(s) 2, 468
PluTI GGCGCC 1 cut(s) 230
PpsI GAGTC 2 cut(s) 2, 468
Ppu21I YACGTR 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 839
PspGI CCWGG 1 cut(s) 839
PspN4I GGNNCC 3 cut(s) 216, 222, 228
PspPI GGNCC 7 cut(s) 67, 257, 495, 523, 533, 562, 953
RsaI GTAC 9 cut(s) 33, 288, 516, 545, 677, 744, 848, 988, 1340
RsaNI GTAC 9 cut(s) 32, 287, 515, 544, 676, 743, 847, 987, 1339
RseI CAYNNNNRTG 2 cut(s) 252, 618
SaqAI TTAA 5 cut(s) 86, 897, 935, 1254, 1446
SatI GCNGC 1 cut(s) 1014
Sau3AI GATC 2 cut(s) 712, 1116
Sau96I GGNCC 7 cut(s) 67, 257, 495, 523, 533, 562, 953
ScaI AGTACT 2 cut(s) 33, 288
SchI GAGTC 2 cut(s) 2, 469
ScrFI CCNGG 2 cut(s) 841, 1208
SduI GDGCHC 1 cut(s) 1148
SfaNI GCATC 3 cut(s) 622, 824, 1353
SfcI CTRYAG 2 cut(s) 499, 1101
SfoI GGCGCC 1 cut(s) 228
SgrAI CRCCGGYG 1 cut(s) 223
SinI GGWCC 2 cut(s) 67, 523
SmiMI CAYNNNNRTG 2 cut(s) 252, 618
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
SnaBI TACGTA 1 cut(s) 543
Sse9I AATT 4 cut(s) 385, 1215, 1278, 1475
SsiI CCGC 3 cut(s) 239, 956, 1283
SspDI GGCGCC 1 cut(s) 226
SspI AATATT 1 cut(s) 1314
SspMI CTAG 3 cut(s) 594, 906, 1173
StyD4I CCNGG 2 cut(s) 839, 1206
StyI CCWWGG 1 cut(s) 1018
TaaI ACNGT 4 cut(s) 67, 299, 986, 991
TaiI ACGT 2 cut(s) 545, 832
TaqI TCGA 2 cut(s) 706, 1462
TasI AATT 4 cut(s) 385, 1215, 1278, 1475
TatI WGTACW 4 cut(s) 31, 286, 675, 742
TfiI GAWTC 2 cut(s) 853, 1223
Tru1I TTAA 5 cut(s) 86, 897, 935, 1254, 1446
Tru9I TTAA 5 cut(s) 86, 897, 935, 1254, 1446
TscAI CASTG 2 cut(s) 304, 1443
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 1013
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 6 cut(s) 559, 592, 692, 725, 1098, 1205
TspRI CASTG 2 cut(s) 304, 1443
Van91I CCANNNNNTGG 1 cut(s) 793
VpaK11BI GGWCC 2 cut(s) 67, 523
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 2 cut(s) 1278, 1475
XceI RCATGY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 1089
XspI CTAG 3 cut(s) 594, 906, 1173
ZrmI AGTACT 2 cut(s) 33, 288
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.