Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000987

Physical Location & Seq

Genomic Coordinates Forward (+)

2069765 .. 2071589

Gene Structure 1825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG029600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGACCAGAAGCTTTAAATACCCTGCACTATTTTTGTTAACTACATTATCGATTCTTTTTCTCCTGATATTTAAACCTTTACTGACCAAAAACCATTTCAGTATTCCCTTTGTTTCCACCCTCACTAGTACACCTTTCATCAATCCAGAAAACAGCAACTACACACTACCCCCACCGCAAGTTTCTTTAGATGGGTTTCTCACAAGCTCCATGGATCGAAGGAGTAGGTGCGACGTTAATGGTACCAAAGACAAGACTAGTTTGGAGAGAATTGAAGATGGTTTAGCTGAAGCTCGAGCTTCAATTCTCGATGCAATTCGGTTTGAAGACTATACATCTTCTTTCTCGAGACTTTTTATCCTAAGAGGAAGCATTTACAAAAACCCTTATGCATTTCACCAGAGCCACATAGAGATGAATAAGAGGTTTAAGGTGTGGAGCTACATGGAAGGAGAACATCCCTTAGTGCATTTGGGTCCGATGAATAGGATATATGGCACTGAAGGACAATTCATAGATGAAATTAATACCAACACTGTGCACTATGTGTACCGGCCTGTCATCCGAAAAGAGAACTACCTCCGTGATCGCCTACAACGGATTGCCATGGACTACATAGGTGTTGTGGCACATAAGTACCCCTACTGGAATAGAAGCGATGGTGCTGACCATTTTATGGCTTCATGTCATGACTGGGGACCGCAGATTTCACTAGGTCAATCGGAACTCCTGAAGAACTTCATTAGAGTACTTTGCAATGCCAACACCTCAGAAGGGTTTGAACCTAAAAGAGACGTTTCACTACCTGAAGTTTTTGTACCTTCTGGAAAGCTTAGCCGGCCCAATTTTGGTCAAGCCCCACACAATCGCCGGATTCTGGCCTTCTTTGTTGGTGGTGTTCATAGACCGATTCGACCTATCTTGCTCCATCATTGGAAGGACAAAGATAACGAAGTTCAAGTCCACGAGACGCTTCCCGAAGGCATGAACTACACCGCATTAATTGGTTTTGAAGTGGCAAGTGCAAGAGTTGTGGAGGCAATTTATGCAGGGTGTGTTCCAGTGATAATATCTGACCACTACACACTACCCTTTAGCGATGTCCTCGACTGGAGCCAATTTTCAATACAAATTACCGTCGCTAAAATACCAGAAATCAAGACCATCTTACAAGCGATTCCAGATGAGGAATACCAAAAGATGCAGAGAAGGGTTTTAAAAGTTCAGAGGCATTTTGTACTCAACAGGCCGGCTAAGCCATTTGATGTGATTCACATGGTACTTCACTCAGTGTGGCTGAGACGAATTGACTTTAAGATTGGCTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010393 GO:0010398 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0035252 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045488 GO:0045489 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

443

Amino Acids

51.14

Weight (kDa)

9.05

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	126 - 393	5.4e-41	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42180 AT3G42180
fragaria_vesca	FvH4_1g02510 FvH4_1g02510 FvH4_1g02511 FvH4_1g02520 FvH4_1g02520 FvH4_6g00700 FvH4_6g00700 FvH4_6g00700
malus_domestica	MD02G1022600.v1.1 MD04G1242600.v1.1 MD04G1243200.v1.1 MD04G1243300.v1.1 MD04G1243400.v1.1 MD15G1165200.v1.1 MD15G1165300.v1.1
prunus_persica	Prupe.6G359500_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.7G249500_v2.0.a1 Prupe.7G249600_v2.0.a1 Prupe.7G249600_v2.0.a1
pyrus_communis	pycom04g21420
rosa_chinensis	RchiOBHm_Chr2g0087521 RchiOBHm_Chr2g0087541 RchiOBHm_Chr2g0087551 RchiOBHm_Chr3g0448141 RchiOBHm_Chr3g0448161
rosa_laevigata	RLG00000015875 RLG00000015876 RLG00000015877 RLG00000025942 RLG00000025943
rosa_multiflora	Rmu_sc0002299.1_g000012 Rmu_sc0002299.1_g000014 Rmu_sc0002299.1_g000020 Rmu_sc0005969.1_g000031
rosa_roxburghii	Rroxscaffold_2G00153480 Rroxscaffold_6G00426270 Rroxscaffold_6G00426300
rosa_rugosa	Rorug01G0476400 Rorug01G0476400 Rorug01G0476400 Rorug02G0608400 Rorug02G0608400 Rorug02G0608500
rosa_samantha	Rh2AG029600 Rh2AG029700 Rh2AG029800 Rh2BG029700 Rh2BG029800 Rh3BG007800 Rh3BG007900 Rh3CG007800 Rh3CG008000 Rh3DG008200
rosa_wichuraiana	Rw2G002350 Rw2G002360 Rw2G002370 Rw3G000650 Rw3G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	676
AciI	CCGC	3 cut(s)	176, 701, 996
AclWI	GGATC	1 cut(s)	222
AcuI	CTGAAG	4 cut(s)	309, 522, 752, 828
AdeI	CACNNNGTG	2 cut(s)	547, 1291
AfaI	GTAC	8 cut(s)	130, 244, 551, 638, 750, 819, 1239, 1281
AfiI	CCNNNNNNNGG	4 cut(s)	676, 774, 848, 877
AgsI	TTSAA	7 cut(s)	275, 303, 326, 782, 959, 1013, 1125
AhlI	ACTAGT	2 cut(s)	125, 257
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	7 cut(s)	12, 207, 287, 293, 299, 441, 832
AluI	AGCT	7 cut(s)	12, 207, 287, 293, 299, 441, 832
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	4 cut(s)	343, 786, 962, 1294
Alw44I	GTGCAC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	222
Ama87I	CYCGRG	2 cut(s)	294, 346
AoxI	GGCC	4 cut(s)	554, 839, 879, 1247
ApaLI	GTGCAC	1 cut(s)	539
ArsI	GACNNNNNNTTYG	2 cut(s)	945, 977
AseI	ATTAAT	2 cut(s)	525, 1001
Asp700I	GAANNNNTTC	1 cut(s)	737
Asp718I	GGTACC	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	476, 698, 840
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	2 cut(s)	294, 346
AvaII	GGWCC	2 cut(s)	476, 698
BaeGI	GKGCMC	1 cut(s)	543
BaeI	ACNNNNGTAYC	2 cut(s)	620, 653
BanI	GGYRCC	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	801, 833
BauI	CACGAG	1 cut(s)	965
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	543
BccI	CCATC	5 cut(s)	185, 272, 653, 936, 1172
BcoDI	GTCTC	4 cut(s)	343, 786, 962, 1294
BcuI	ACTAGT	2 cut(s)	125, 257
BfaI	CTAG	3 cut(s)	126, 258, 713
BlpI	GCTNAGC	2 cut(s)	833, 1254
BmcAI	AGTACT	1 cut(s)	750
Bme18I	GGWCC	2 cut(s)	476, 698
BmeT110I	CYCGRG	2 cut(s)	294, 346
BmgT120I	GGNCC	3 cut(s)	476, 698, 840
BmiI	GGNNCC	4 cut(s)	244, 477, 699, 1115
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	2 cut(s)	301, 1191
BmuI	ACTGGG	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	1132
Bpu1102I	GCTNAGC	2 cut(s)	833, 1254
Bsa29I	ATCGAT	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	210, 606
Bsc4I	CCNNNNNNNGG	4 cut(s)	676, 774, 848, 877
Bse118I	RCCGGY	3 cut(s)	552, 837, 1249
Bse1I	ACTGG	4 cut(s)	650, 698, 1061, 1115
Bse3DI	GCAATG	1 cut(s)	763
BseCI	ATCGAT	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	210, 606
BseGI	GGATG	2 cut(s)	457, 561
BseLI	CCNNNNNNNGG	4 cut(s)	676, 774, 848, 877
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	3 cut(s)	783, 1289, 1302
BseNI	ACTGG	4 cut(s)	650, 698, 1061, 1115
BseSI	GKGCMC	1 cut(s)	543
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	556, 841, 881, 1249
BshNI	GGYRCC	1 cut(s)	242
BshVI	ATCGAT	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	2 cut(s)	294, 346
BsiSI	CCGG	4 cut(s)	553, 838, 871, 1250
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	4 cut(s)	676, 774, 848, 877
BsmAI	GTCTC	4 cut(s)	343, 786, 962, 1294
BsmBI	CGTCTC	3 cut(s)	786, 962, 1294
BsmFI	GGGAC	1 cut(s)	711
BsnI	GGCC	4 cut(s)	556, 841, 881, 1249
BsoBI	CYCGRG	2 cut(s)	294, 346
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	214, 586
Bsp1720I	GCTNAGC	2 cut(s)	833, 1254
Bsp19I	CCATGG	2 cut(s)	210, 606
BspACI	CCGC	3 cut(s)	176, 701, 996
BspANI	GGCC	4 cut(s)	556, 841, 881, 1249
BspCNI	CTCAG	3 cut(s)	782, 1290, 1301
BspDI	ATCGAT	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	4 cut(s)	244, 477, 699, 1115
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	763
BsrFI	RCCGGY	3 cut(s)	552, 837, 1249
BsrI	ACTGG	4 cut(s)	650, 698, 1061, 1115
BssAI	RCCGGY	3 cut(s)	552, 837, 1249
BssECI	CCNNGG	2 cut(s)	210, 606
BssMI	GATC	2 cut(s)	214, 586
BssSI	CACGAG	1 cut(s)	965
BssT1I	CCWWGG	2 cut(s)	210, 606
Bst2BI	CACGAG	1 cut(s)	965
Bst4CI	ACNGT	2 cut(s)	538, 1138
BstAPI	GCANNNNNTGC	1 cut(s)	1046
BstC8I	GCNNGC	2 cut(s)	839, 1251
BstDEI	CTNAG	7 cut(s)	362, 463, 769, 833, 1254, 1288, 1298
BstDSI	CCRYGG	2 cut(s)	210, 606
BstF5I	GGATG	2 cut(s)	457, 561
BstKTI	GATC	2 cut(s)	217, 589
BstMAI	GTCTC	4 cut(s)	343, 786, 962, 1294
BstMBI	GATC	2 cut(s)	214, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	838, 1046, 1255
BstSLI	GKGCMC	1 cut(s)	543
BstV2I	GAAGAC	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	50
BsuRI	GGCC	4 cut(s)	556, 841, 881, 1249
BsuTUI	ATCGAT	1 cut(s)	50
BtgI	CCRYGG	2 cut(s)	210, 606
BtgZI	GCGATG	2 cut(s)	672, 1113
BtsCI	GGATG	2 cut(s)	457, 561
BtsIMutI	CAGTG	4 cut(s)	498, 534, 1068, 1296
Cac8I	GCNNGC	2 cut(s)	839, 1251
CciI	TCATGA	1 cut(s)	688
Cfr10I	RCCGGY	3 cut(s)	552, 837, 1249
Cfr13I	GGNCC	3 cut(s)	476, 698, 840
ClaI	ATCGAT	1 cut(s)	50
CseI	GACGC	1 cut(s)	979
Csp6I	GTAC	8 cut(s)	129, 243, 550, 637, 749, 818, 1238, 1280
CspCI	CAANNNNNGTGG	2 cut(s)	1014, 1049
CviAII	CATG	7 cut(s)	211, 445, 607, 684, 689, 985, 1276
CviQI	GTAC	8 cut(s)	129, 243, 550, 637, 749, 818, 1238, 1280
DdeI	CTNAG	7 cut(s)	362, 463, 769, 833, 1254, 1288, 1298
DpnI	GATC	2 cut(s)	216, 588
DpnII	GATC	2 cut(s)	214, 586
DraI	TTTAAA	3 cut(s)	16, 73, 1218
DraIII	CACNNNGTG	2 cut(s)	547, 1291
Eco130I	CCWWGG	2 cut(s)	210, 606
Eco47I	GGWCC	2 cut(s)	476, 698
Eco57I	CTGAAG	4 cut(s)	309, 522, 752, 828
Eco88I	CYCGRG	2 cut(s)	294, 346
EcoT14I	CCWWGG	2 cut(s)	210, 606
EcoT22I	ATGCAT	1 cut(s)	394
ErhI	CCWWGG	2 cut(s)	210, 606
Esp3I	CGTCTC	3 cut(s)	786, 962, 1294
FaeI	CATG	7 cut(s)	214, 448, 610, 687, 692, 988, 1279
FalI	AAGNNNNNCTT	2 cut(s)	1151, 1183
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	7 cut(s)	210, 444, 606, 683, 688, 984, 1275
FokI	GGATG	2 cut(s)	444, 548
FspBI	CTAG	3 cut(s)	126, 258, 713
GsuI	CTGGAG	1 cut(s)	1132
HaeIII	GGCC	4 cut(s)	556, 841, 881, 1249
HapII	CCGG	4 cut(s)	553, 838, 871, 1250
HgaI	GACGC	1 cut(s)	979
Hin1II	CATG	7 cut(s)	214, 448, 610, 687, 692, 988, 1279
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	2 cut(s)	10, 830
HinfI	GANTC	5 cut(s)	52, 874, 910, 1177, 1270
HpaI	GTTAAC	1 cut(s)	39
HpaII	CCGG	4 cut(s)	553, 838, 871, 1250
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	5 cut(s)	39, 131, 541, 550, 964
Hpy188I	TCNGA	6 cut(s)	480, 566, 724, 772, 1075, 1227
Hpy8I	GTNNAC	5 cut(s)	39, 131, 541, 550, 964
Hpy99I	CGWCG	2 cut(s)	236, 1142
HpyAV	CCTTC	9 cut(s)	213, 443, 497, 767, 831, 892, 931, 974, 1203
HpyCH4III	ACNGT	2 cut(s)	538, 1138
HpyCH4IV	ACGT	2 cut(s)	234, 795
HpyCH4V	TGCA	9 cut(s)	26, 314, 392, 469, 541, 756, 1025, 1049, 1204
HpyF10VI	GCNNNNNNNGC	3 cut(s)	838, 1046, 1255
HpyF3I	CTNAG	7 cut(s)	362, 463, 769, 833, 1254, 1288, 1298
HpySE526I	ACGT	2 cut(s)	234, 795
Hsp92II	CATG	7 cut(s)	214, 448, 610, 687, 692, 988, 1279
KpnI	GGTACC	1 cut(s)	246
KroI	GCCGGC	2 cut(s)	837, 1249
KroNI	GCCGGC	2 cut(s)	839, 1251
KspAI	GTTAAC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	214, 586
LmnI	GCTCC	4 cut(s)	212, 438, 930, 1113
LweI	GCATC	2 cut(s)	301, 1191
MaeI	CTAG	3 cut(s)	126, 258, 713
MaeII	ACGT	2 cut(s)	234, 795
MalI	GATC	2 cut(s)	216, 588
MboI	GATC	2 cut(s)	214, 586
MboII	GAAGA	4 cut(s)	287, 330, 338, 745
MhlI	GDGCHC	1 cut(s)	543
MnlI	CCTC	9 cut(s)	131, 359, 417, 590, 778, 1030, 1115, 1180, 1221
Mph1103I	ATGCAT	1 cut(s)	394
MroNI	GCCGGC	2 cut(s)	837, 1249
MroXI	GAANNNNTTC	1 cut(s)	737
MseI	TTAA	9 cut(s)	15, 38, 72, 237, 429, 525, 1001, 1217, 1314
MslI	CAYNNNNRTG	1 cut(s)	413
MspI	CCGG	4 cut(s)	553, 838, 871, 1250
MwoI	GCNNNNNNNGC	3 cut(s)	838, 1046, 1255
NaeI	GCCGGC	2 cut(s)	839, 1251
NcoI	CCATGG	2 cut(s)	210, 606
NdeII	GATC	2 cut(s)	214, 586
NgoMIV	GCCGGC	2 cut(s)	837, 1249
NlaIII	CATG	7 cut(s)	214, 448, 610, 687, 692, 988, 1279
NlaIV	GGNNCC	4 cut(s)	244, 477, 699, 1115
NsiI	ATGCAT	1 cut(s)	394
PaeR7I	CTCGAG	2 cut(s)	294, 346
PagI	TCATGA	1 cut(s)	688
PdiI	GCCGGC	2 cut(s)	839, 1251
PdmI	GAANNNNTTC	1 cut(s)	737
PfeI	GAWTC	5 cut(s)	52, 874, 910, 1177, 1270
PflMI	CCANNNNNTGG	1 cut(s)	676
PshBI	ATTAAT	2 cut(s)	525, 1001
PspN4I	GGNNCC	4 cut(s)	244, 477, 699, 1115
PspPI	GGNCC	3 cut(s)	476, 698, 840
PspXI	VCTCGAGB	1 cut(s)	294
RsaI	GTAC	8 cut(s)	130, 244, 551, 638, 750, 819, 1239, 1281
RsaNI	GTAC	8 cut(s)	129, 243, 550, 637, 749, 818, 1238, 1280
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	9 cut(s)	15, 38, 72, 237, 429, 525, 1001, 1217, 1314
Sau3AI	GATC	2 cut(s)	214, 586
Sau96I	GGNCC	3 cut(s)	476, 698, 840
ScaI	AGTACT	1 cut(s)	750
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	2 cut(s)	301, 1191
Sfr274I	CTCGAG	2 cut(s)	294, 346
SinI	GGWCC	2 cut(s)	476, 698
SlaI	CTCGAG	2 cut(s)	294, 346
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	2 cut(s)	294, 346
SmoI	CTYRAG	2 cut(s)	294, 346
SpeI	ACTAGT	2 cut(s)	125, 257
SsiI	CCGC	3 cut(s)	176, 701, 996
SspMI	CTAG	3 cut(s)	126, 258, 713
StyI	CCWWGG	2 cut(s)	210, 606
TaaI	ACNGT	2 cut(s)	538, 1138
TaiI	ACGT	2 cut(s)	237, 798
TaqI	TCGA	7 cut(s)	50, 217, 295, 309, 347, 913, 1107
TaqII	GACCGA	1 cut(s)	922
TatI	WGTACW	3 cut(s)	128, 748, 1237
TfiI	GAWTC	5 cut(s)	52, 874, 910, 1177, 1270
Tru1I	TTAA	9 cut(s)	15, 38, 72, 237, 429, 525, 1001, 1217, 1314
Tru9I	TTAA	9 cut(s)	15, 38, 72, 237, 429, 525, 1001, 1217, 1314
TscAI	CASTG	4 cut(s)	505, 541, 1068, 1296
TspDTI	ATGAA	9 cut(s)	127, 431, 497, 502, 534, 672, 730, 890, 1001
TspGWI	ACGGA	2 cut(s)	572, 613
TspRI	CASTG	4 cut(s)	505, 541, 1068, 1296
Van91I	CCANNNNNTGG	1 cut(s)	676
VneI	GTGCAC	1 cut(s)	539
VpaK11BI	GGWCC	2 cut(s)	476, 698
VspI	ATTAAT	2 cut(s)	525, 1001
XhoI	CTCGAG	2 cut(s)	294, 346
XmnI	GAANNNNTTC	1 cut(s)	737
XspI	CTAG	3 cut(s)	126, 258, 713
ZrmI	AGTACT	1 cut(s)	750
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.