Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002299.1

Orthogroup ID

OG0000987

Physical Location & Seq

Genomic Coordinates Forward (+)

69766 .. 71480

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002299.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

atgactggaagctttcgttgccctgcactttttttgttaactacattgtcttgtcttctgttcttccacctaatcttcacacctttatcgtctgaaacccatctcagtatttctccggtatcctctttcactacacctttgactaatccagaaaagaccagcaactcaactccatcgacacatgtagcttctttagatgaggttctcaccagctccatgtaccgaaggattaggagcaaggttgacggtaccaaagagaagactagtttggagagaattgaagaagatttagctaaagcacgagcatcgattctcagagcaattcagtttgaaaactacacatcagagaaagaacagagttttgtcccaagaggaagcatttacaaaaacccctatgcttttcaccagagtcacctagaaatgatgaagatgttcaagatgtggagctacgaggaaggagaacaacccttggtccattttggtcctatgaatgatatatatggcattgaaggacacttcatagatgaaatagaaagggaggggagcccatttagggctacacatcctgatgaggcacacatgtttttcctcccatttagtgtagctaacattgttcactatgtttacttgcctatcactaaaaaacaggactaccaccgtgatcgtctacaacagattaccagggactacattggcgttgtggcacataagtatccctattggaataggagcaaaggtgccgaccattttatggcttcatgtcacgattgggcaccagagatttcagctggccaatcgaagcttttcaaaaacttcattagagtgctttgcaatgccaacacctctgaagggttccaacctaagagagatgttccattacctgaaatatttgtaccttctggaaagctcggtccccccaatttgggtcaggctccaaacaatcgtcgaattctggccttctttgctggtagagttcatggaccgattcgaccaatcttgctcgagcattggaaggacaaagatgacgaaattcaagtccacgagaagcttcccaagggcatgaactacacagcattaatgggacaaagcaagttttgcttgtgccctagtggttttgaagtggcaagccctagagttgtggaggcattttatgcagggtgtgttccggtgttaattaacgacaactacacattaccctttagtgatgtccttgattggagccaattttcaatacaaattcccgtcgcgaaaatacaagaaatcaagaccatcttacaagcaattccaaatgaggaatacctaaagatgcagaggagggttttaaaagttcggaggcattttgtactcaacaagccggctaagccatttgatgtgattcacatggtacttcattcagtgtggctgagacgacttaattttaagcttggaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010393 GO:0010398 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0035252 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045488 GO:0045489 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

477

Amino Acids

54.79

Weight (kDa)

8.86

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42180 AT3G42180
fragaria_vesca	FvH4_1g02510 FvH4_1g02510 FvH4_1g02511 FvH4_1g02520 FvH4_1g02520 FvH4_6g00700 FvH4_6g00700 FvH4_6g00700
malus_domestica	MD02G1022600.v1.1 MD04G1242600.v1.1 MD04G1243200.v1.1 MD04G1243300.v1.1 MD04G1243400.v1.1 MD15G1165200.v1.1 MD15G1165300.v1.1
prunus_persica	Prupe.6G359500_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.6G359600_v2.0.a1 Prupe.7G249500_v2.0.a1 Prupe.7G249600_v2.0.a1 Prupe.7G249600_v2.0.a1
pyrus_communis	pycom04g21420
rosa_chinensis	RchiOBHm_Chr2g0087521 RchiOBHm_Chr2g0087541 RchiOBHm_Chr2g0087551 RchiOBHm_Chr3g0448141 RchiOBHm_Chr3g0448161
rosa_laevigata	RLG00000015875 RLG00000015876 RLG00000015877 RLG00000025942 RLG00000025943
rosa_multiflora	Rmu_sc0002299.1_g000012 Rmu_sc0002299.1_g000014 Rmu_sc0002299.1_g000020 Rmu_sc0005969.1_g000031
rosa_roxburghii	Rroxscaffold_2G00153480 Rroxscaffold_6G00426270 Rroxscaffold_6G00426300
rosa_rugosa	Rorug01G0476400 Rorug01G0476400 Rorug01G0476400 Rorug02G0608400 Rorug02G0608400 Rorug02G0608500
rosa_samantha	Rh2AG029600 Rh2AG029700 Rh2AG029800 Rh2BG029700 Rh2BG029800 Rh3BG007800 Rh3BG007900 Rh3CG007800 Rh3CG008000 Rh3DG008200
rosa_wichuraiana	Rw2G002350 Rw2G002360 Rw2G002370 Rw3G000650 Rw3G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	3 cut(s)	248, 737, 772
AccB7I	CCANNNNNTGG	1 cut(s)	751
AccI	GTMKAC	1 cut(s)	667
AccII	CGCG	1 cut(s)	1247
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	3 cut(s)	948, 1029, 1236
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	5 cut(s)	221, 250, 894, 1344, 1386
AfiI	CCNNNNNNNGG	5 cut(s)	553, 751, 849, 922, 923
AflIII	ACRYGT	2 cut(s)	181, 579
AgsI	TTSAA	8 cut(s)	281, 332, 436, 509, 808, 1034, 1118, 1230
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	680
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
Alw26I	GTCTC	1 cut(s)	1399
Ama87I	CYCGRG	1 cut(s)	1001
AoxI	GGCC	2 cut(s)	790, 954
ApoI	RAATTY	3 cut(s)	948, 1029, 1236
ArsI	GACNNNNNNTTYG	2 cut(s)	1020, 1052
AseI	ATTAAT	1 cut(s)	1076
Asp700I	GAANNNNTTC	2 cut(s)	431, 803
Asp718I	GGTACC	1 cut(s)	248
AspS9I	GGNCC	4 cut(s)	472, 482, 911, 980
AsuHPI	GGTGA	3 cut(s)	199, 395, 404
AvaI	CYCGRG	1 cut(s)	1001
AvaII	GGWCC	4 cut(s)	472, 482, 911, 980
BaeGI	GKGCMC	2 cut(s)	775, 1106
BaeI	ACNNNNGTAYC	2 cut(s)	695, 728
BalI	TGGCCA	1 cut(s)	792
BanI	GGYRCC	3 cut(s)	248, 737, 772
BanII	GRGCYC	1 cut(s)	548
BauI	CACGAG	2 cut(s)	300, 1040
BbsI	GAAGAC	2 cut(s)	47, 266
BccI	CCATC	3 cut(s)	108, 181, 1277
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	1 cut(s)	682
BciVI	GTATCC	2 cut(s)	130, 723
BcoDI	GTCTC	1 cut(s)	1399
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	4 cut(s)	264, 416, 1107, 1131
BfuI	GTATCC	2 cut(s)	130, 723
BlpI	GCTNAGC	1 cut(s)	1359
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	4 cut(s)	472, 482, 911, 980
BmeT110I	CYCGRG	1 cut(s)	1001
BmgT120I	GGNCC	4 cut(s)	472, 482, 911, 980
BmiI	GGNNCC	8 cut(s)	250, 545, 739, 774, 854, 913, 933, 1220
BmrFI	CCNGG	1 cut(s)	682
BmsI	GCATC	2 cut(s)	314, 1296
BpiI	GAAGAC	2 cut(s)	47, 266
Bpu1102I	GCTNAGC	1 cut(s)	1359
Bsa29I	ATCGAT	1 cut(s)	308
BsaJI	CCNNGG	3 cut(s)	468, 681, 1053
BsaWI	WCCGGW	2 cut(s)	115, 1165
BsaXI	ACNNNNNCTCC	2 cut(s)	721, 751
Bsc4I	CCNNNNNNNGG	5 cut(s)	553, 751, 849, 922, 923
Bse118I	RCCGGY	1 cut(s)	1354
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	838
BseBI	CCWGG	1 cut(s)	682
BseCI	ATCGAT	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	468, 681, 1053
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	5 cut(s)	553, 751, 849, 922, 923
BseMI	GCAATG	1 cut(s)	838
BseMII	CTCAG	3 cut(s)	118, 328, 1394
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	1 cut(s)	1327
BseSI	GKGCMC	2 cut(s)	775, 1106
BsgI	GTGCAG	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	1247
BshFI	GGCC	2 cut(s)	792, 956
BshNI	GGYRCC	3 cut(s)	248, 737, 772
BshVI	ATCGAT	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	1001
BsiSI	CCGG	3 cut(s)	116, 1166, 1355
BslFI	GGGAC	4 cut(s)	350, 698, 897, 1095
BslI	CCNNNNNNNGG	5 cut(s)	553, 751, 849, 922, 923
BsmAI	GTCTC	1 cut(s)	1399
BsmBI	CGTCTC	1 cut(s)	1399
BsmFI	GGGAC	4 cut(s)	350, 698, 897, 1095
BsnI	GGCC	2 cut(s)	792, 956
BsoBI	CYCGRG	1 cut(s)	1001
Bsp1286I	GDGCHC	3 cut(s)	548, 775, 1106
Bsp143I	GATC	1 cut(s)	661
Bsp1720I	GCTNAGC	1 cut(s)	1359
Bsp68I	TCGCGA	1 cut(s)	1247
BspANI	GGCC	2 cut(s)	792, 956
BspCNI	CTCAG	3 cut(s)	117, 327, 1395
BspDI	ATCGAT	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	1247
BspLI	GGNNCC	8 cut(s)	250, 545, 739, 774, 854, 913, 933, 1220
BspT107I	GGYRCC	3 cut(s)	248, 737, 772
BsrDI	GCAATG	1 cut(s)	838
BsrFI	RCCGGY	1 cut(s)	1354
BsrI	ACTGG	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	1354
BssECI	CCNNGG	3 cut(s)	468, 681, 1053
BssMI	GATC	1 cut(s)	661
BssSI	CACGAG	2 cut(s)	300, 1040
BssT1I	CCWWGG	2 cut(s)	468, 1053
Bst2BI	CACGAG	2 cut(s)	300, 1040
Bst2UI	CCWGG	1 cut(s)	682
Bst4CI	ACNGT	2 cut(s)	248, 659
BstAPI	GCANNNNNTGC	2 cut(s)	1095, 1151
BstC8I	GCNNGC	3 cut(s)	790, 1126, 1356
BstDEI	CTNAG	5 cut(s)	104, 314, 861, 1359, 1403
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	1247
BstKTI	GATC	1 cut(s)	664
BstMAI	GTCTC	1 cut(s)	1399
BstMBI	GATC	1 cut(s)	661
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 962, 1095, 1151, 1360
BstNI	CCWGG	1 cut(s)	682
BstNSI	RCATGY	2 cut(s)	185, 583
BstSCI	CCNGG	1 cut(s)	680
BstSLI	GKGCMC	2 cut(s)	775, 1106
BstUI	CGCG	1 cut(s)	1247
BstV2I	GAAGAC	2 cut(s)	47, 266
Bsu15I	ATCGAT	1 cut(s)	308
BsuI	GTATCC	2 cut(s)	130, 723
BsuRI	GGCC	2 cut(s)	792, 956
BsuTUI	ATCGAT	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	1401
BtuMI	TCGCGA	1 cut(s)	1247
Cac8I	GCNNGC	3 cut(s)	790, 1126, 1356
Cfr10I	RCCGGY	1 cut(s)	1354
Cfr13I	GGNCC	4 cut(s)	472, 482, 911, 980
ClaI	ATCGAT	1 cut(s)	308
Csp6I	GTAC	5 cut(s)	220, 249, 893, 1343, 1385
CviAII	CATG	7 cut(s)	182, 217, 580, 759, 977, 1060, 1381
CviQI	GTAC	5 cut(s)	220, 249, 893, 1343, 1385
DdeI	CTNAG	5 cut(s)	104, 314, 861, 1359, 1403
DpnI	GATC	1 cut(s)	663
DpnII	GATC	1 cut(s)	661
DraI	TTTAAA	1 cut(s)	1323
EaeI	YGGCCR	1 cut(s)	790
Eco130I	CCWWGG	2 cut(s)	468, 1053
Eco24I	GRGCYC	1 cut(s)	548
Eco47I	GGWCC	4 cut(s)	472, 482, 911, 980
Eco57I	CTGAAG	1 cut(s)	867
Eco88I	CYCGRG	1 cut(s)	1001
EcoRI	GAATTC	1 cut(s)	948
EcoRII	CCWGG	1 cut(s)	680
EcoT14I	CCWWGG	2 cut(s)	468, 1053
EcoT38I	GRGCYC	1 cut(s)	548
ErhI	CCWWGG	2 cut(s)	468, 1053
Esp3I	CGTCTC	1 cut(s)	1399
FaeI	CATG	7 cut(s)	185, 220, 583, 762, 980, 1063, 1384
FalI	AAGNNNNNCTT	4 cut(s)	1082, 1114, 1256, 1288
FaqI	GGGAC	4 cut(s)	350, 698, 897, 1095
FatI	CATG	7 cut(s)	181, 216, 579, 758, 976, 1059, 1380
FblI	GTMKAC	1 cut(s)	667
FokI	GGATG	1 cut(s)	549
FriOI	GRGCYC	1 cut(s)	548
FspBI	CTAG	4 cut(s)	264, 416, 1107, 1131
HaeIII	GGCC	2 cut(s)	792, 956
HapII	CCGG	3 cut(s)	116, 1166, 1355
Hin1II	CATG	7 cut(s)	185, 220, 583, 762, 980, 1063, 1384
HincII	GTYRAC	2 cut(s)	39, 244
HindII	GTYRAC	2 cut(s)	39, 244
HindIII	AAGCTT	4 cut(s)	10, 800, 1046, 1421
HinfI	GANTC	4 cut(s)	310, 409, 985, 1375
HpaI	GTTAAC	1 cut(s)	39
HpaII	CCGG	3 cut(s)	116, 1166, 1355
HphI	GGTGA	3 cut(s)	199, 395, 404
Hpy166II	GTNNAC	6 cut(s)	39, 244, 616, 625, 668, 1039
Hpy188I	TCNGA	5 cut(s)	94, 317, 346, 847, 1332
Hpy188III	TCNNGA	7 cut(s)	149, 436, 566, 764, 900, 1246, 1264
Hpy8I	GTNNAC	6 cut(s)	39, 244, 616, 625, 668, 1039
Hpy99I	CGWCG	2 cut(s)	948, 1247
HpyAV	CCTTC	7 cut(s)	219, 449, 503, 842, 906, 967, 1006
HpyCH4III	ACNGT	2 cut(s)	248, 659
HpyCH4V	TGCA	4 cut(s)	26, 831, 1154, 1309
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 962, 1095, 1151, 1360
HpyF3I	CTNAG	5 cut(s)	104, 314, 861, 1359, 1403
Hsp92II	CATG	7 cut(s)	185, 220, 583, 762, 980, 1063, 1384
KpnI	GGTACC	1 cut(s)	252
KroI	GCCGGC	1 cut(s)	1354
KroNI	GCCGGC	1 cut(s)	1356
KspAI	GTTAAC	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	661
LmnI	GCTCC	7 cut(s)	218, 234, 444, 543, 729, 937, 1218
LweI	GCATC	2 cut(s)	314, 1296
MaeI	CTAG	4 cut(s)	264, 416, 1107, 1131
MaeIII	GTNAC	2 cut(s)	410, 761
MalI	GATC	1 cut(s)	663
MboI	GATC	1 cut(s)	661
MboII	GAAGA	7 cut(s)	47, 55, 67, 271, 293, 296, 439
MhlI	GDGCHC	3 cut(s)	548, 775, 1106
MlsI	TGGCCA	1 cut(s)	792
MluNI	TGGCCA	1 cut(s)	792
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	880
Mox20I	TGGCCA	1 cut(s)	792
MroNI	GCCGGC	1 cut(s)	1354
MroXI	GAANNNNTTC	2 cut(s)	431, 803
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	7 cut(s)	38, 1076, 1172, 1176, 1322, 1413, 1419
MslI	CAYNNNNRTG	2 cut(s)	567, 821
Msp20I	TGGCCA	1 cut(s)	792
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	3 cut(s)	116, 1166, 1355
MspR9I	CCNGG	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	682
MvnI	CGCG	1 cut(s)	1247
MwoI	GCNNNNNNNGC	5 cut(s)	18, 962, 1095, 1151, 1360
NaeI	GCCGGC	1 cut(s)	1356
NdeII	GATC	1 cut(s)	661
NgoMIV	GCCGGC	1 cut(s)	1354
NlaIII	CATG	7 cut(s)	185, 220, 583, 762, 980, 1063, 1384
NlaIV	GGNNCC	8 cut(s)	250, 545, 739, 774, 854, 913, 933, 1220
NmuCI	GTSAC	2 cut(s)	410, 761
NruI	TCGCGA	1 cut(s)	1247
NspI	RCATGY	2 cut(s)	185, 583
PacI	TTAATTAA	1 cut(s)	1176
PaeR7I	CTCGAG	1 cut(s)	1001
PciI	ACATGT	2 cut(s)	181, 579
PdiI	GCCGGC	1 cut(s)	1356
PdmI	GAANNNNTTC	2 cut(s)	431, 803
PfeI	GAWTC	3 cut(s)	310, 985, 1375
PflMI	CCANNNNNTGG	1 cut(s)	751
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PscI	ACATGT	2 cut(s)	181, 579
PshBI	ATTAAT	1 cut(s)	1076
Psp6I	CCWGG	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	680
PspN4I	GGNNCC	8 cut(s)	250, 545, 739, 774, 854, 913, 933, 1220
PspPI	GGNCC	4 cut(s)	472, 482, 911, 980
PspXI	VCTCGAGB	1 cut(s)	1001
PvuII	CAGCTG	1 cut(s)	788
RruI	TCGCGA	1 cut(s)	1247
RsaI	GTAC	5 cut(s)	221, 250, 894, 1344, 1386
RsaNI	GTAC	5 cut(s)	220, 249, 893, 1343, 1385
RseI	CAYNNNNRTG	2 cut(s)	567, 821
SaqAI	TTAA	7 cut(s)	38, 1076, 1172, 1176, 1322, 1413, 1419
Sau3AI	GATC	1 cut(s)	661
Sau96I	GGNCC	4 cut(s)	472, 482, 911, 980
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	682
SduI	GDGCHC	3 cut(s)	548, 775, 1106
SfaNI	GCATC	2 cut(s)	314, 1296
Sfr274I	CTCGAG	1 cut(s)	1001
SinI	GGWCC	4 cut(s)	472, 482, 911, 980
SlaI	CTCGAG	1 cut(s)	1001
SmiMI	CAYNNNNRTG	2 cut(s)	567, 821
SmlI	CTYRAG	1 cut(s)	1001
SmoI	CTYRAG	1 cut(s)	1001
SpeI	ACTAGT	1 cut(s)	263
SspI	AATATT	1 cut(s)	888
SspMI	CTAG	4 cut(s)	264, 416, 1107, 1131
StyD4I	CCNGG	1 cut(s)	680
StyI	CCWWGG	2 cut(s)	468, 1053
TaaI	ACNGT	2 cut(s)	248, 659
TaqI	TCGA	6 cut(s)	176, 308, 797, 946, 988, 1002
TaqII	GACCGA	2 cut(s)	899, 997
TatI	WGTACW	1 cut(s)	1342
TfiI	GAWTC	3 cut(s)	310, 985, 1375
Tru1I	TTAA	7 cut(s)	38, 1076, 1172, 1176, 1322, 1413, 1419
Tru9I	TTAA	7 cut(s)	38, 1076, 1172, 1176, 1322, 1413, 1419
TscAI	CASTG	1 cut(s)	1401
TseFI	GTSAC	2 cut(s)	410, 761
Tsp45I	GTSAC	2 cut(s)	410, 761
TspDTI	ATGAA	9 cut(s)	440, 503, 508, 540, 747, 805, 965, 1076, 1379
TspRI	CASTG	1 cut(s)	1401
Van91I	CCANNNNNTGG	1 cut(s)	751
VpaK11BI	GGWCC	4 cut(s)	472, 482, 911, 980
VspI	ATTAAT	1 cut(s)	1076
XapI	RAATTY	3 cut(s)	948, 1029, 1236
XceI	RCATGY	2 cut(s)	185, 583
XhoI	CTCGAG	1 cut(s)	1001
XmiI	GTMKAC	1 cut(s)	667
XmnI	GAANNNNTTC	2 cut(s)	431, 803
XspI	CTAG	4 cut(s)	264, 416, 1107, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.