Rorug02G0608400

CBS domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
72546237 .. 72550256
4020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0608400.1

Sequence Viewer

Length: 411 bp
ATGATAATGGTCTTCAGAACTCTGTTCTTTCTCTTCTTCACCATTTTCTTAGTTATTACGAAGGTTTCAGCTTATGAGTTTGAGAACGAAAATGCCAAGAAGCCGAAGGCATTGATTCACGGCAACGTGCAAACTCCACCACTTCCTCTAAACAAGGTTTACGATGACGAGAAAACTAATCTTCAGAATTTTATCGACTGGATCTGGAACATCCTCCCTAAACCTAAGCCTGAGACACCGCCGAATCCGACCCCGAAAGTGCCGCAAAATCCGATGCCAAATGTGCCACCACCTTCAAAAAAGGCACCCCCACCACCACCGGAGAAAGAAGGAGAAGACGTTGGTAAAAGTAAGATTTCAGCTCCCCTTACTTCAAGACGACAACTTATTGGTTCCATCCCCTTTTGTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.39

Weight (kDa)

9.41

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AciI CCGC 2 cut(s) 239, 263
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 167
AgsI TTSAA 2 cut(s) 297, 375
AluBI AGCT 2 cut(s) 71, 362
AluI AGCT 2 cut(s) 71, 362
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 31
BanI GGYRCC 1 cut(s) 304
BbsI GAAGAC 2 cut(s) 4, 342
BccI CCATC 1 cut(s) 404
BceAI ACGGC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 227
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmiI GGNNCC 2 cut(s) 306, 394
BmsI GCATC 1 cut(s) 264
BpiI GAAGAC 2 cut(s) 4, 342
Bpu10I CCTNAGC 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bse1I ACTGG 1 cut(s) 203
BseGI GGATG 2 cut(s) 210, 396
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 2 cut(s) 239, 263
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 306, 394
BspPI GGATC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 203
BssMI GATC 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 49, 225, 231
BstF5I GGATG 2 cut(s) 210, 396
BstKTI GATC 1 cut(s) 204
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstV2I GAAGAC 2 cut(s) 4, 342
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BtsCI GGATG 2 cut(s) 210, 396
CviJI RGCY 4 cut(s) 71, 103, 229, 362
CviKI_1 RGCY 4 cut(s) 71, 103, 229, 362
DdeI CTNAG 3 cut(s) 49, 225, 231
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 167
FaiI YATR 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 2 cut(s) 197, 383
Fsp4HI GCNGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 263
HapII CCGG 1 cut(s) 320
HinfI GANTC 2 cut(s) 115, 244
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 4 cut(s) 17, 186, 249, 273
Hpy188III TCNNGA 2 cut(s) 205, 375
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 4 cut(s) 55, 100, 303, 323
HpyCH4IV ACGT 2 cut(s) 126, 339
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 3 cut(s) 49, 225, 231
HpySE526I ACGT 2 cut(s) 126, 339
Kzo9I GATC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 4 cut(s) 184, 190, 243, 333
LweI GCATC 1 cut(s) 264
MaeII ACGT 2 cut(s) 126, 339
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 5 cut(s) 4, 25, 28, 173, 347
MflI RGATCY 1 cut(s) 201
MluCI AATT 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 2 cut(s) 156, 224
MspI CCGG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 1 cut(s) 201
NlaIV GGNNCC 2 cut(s) 306, 394
PfeI GAWTC 2 cut(s) 115, 244
PkrI GCNGC 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 306, 394
PsuI RGATCY 1 cut(s) 201
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 201
SetI ASST 8 cut(s) 66, 73, 129, 159, 226, 295, 342, 364
SfaNI GCATC 1 cut(s) 264
Sse9I AATT 1 cut(s) 187
SsiI CCGC 2 cut(s) 239, 263
TaiI ACGT 2 cut(s) 129, 342
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 187
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 2 cut(s) 115, 244
XapI RAATTY 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.