RchiOBHm_Chr2g0087551

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000987
Physical Location & Seq
Forward (+)
2238851 .. 2240959
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46299

Sequence Viewer

Length: 1194 bp
ATGGCAGTCCTCCATTTGTTCCGACTAAAAAATCTCTTGGAGAAGAAGGAAGAAGGTTTGGCTGAAGCACGAGCCGCTATATACAAAGCATCCCGGACACGGAATTATACATCAGATAAAGAAGAGTCCTTCATTCCCAGGGGAAACATATACAGGAATGCTTATGCGTTTCATCAGAGTCATATCGAGATGATAAAGAGGTTTAAGGTGTGGAGTTACAAGGAAGGACAACTTCCCTTGACCCATGTCGGGCCAATGGATTGCATATACTCCATCGAAGGTCATTTTATCGACGAAATGGGAAATGGGAAAAGCCCCTTCATGGCTCAACATCATGATGAGGCTCATGTATATTTTCTTCCTGTGAGTGTGGCCAACATTGTGAAGTACATCTACATGCCGGTCACCGACTGGCATCGTGCTCGGATGGTACGGGTGGTCAAAGATTACGTCAATCTTATAGCAGACAGGTACCCACATTGGAATAGAAGCAAAGGAGCCGACCACTTTATGCTCTCTTGTCATGATTGGGCACCAGGAGTTACTAAAGATGATCCTGAGCTCTATGCGAACTTGATGAGGGTACTATGCAATGCCAACACCTCTGAAGGATTCAAACCCATCAGAGATGTTTCTGTACCAGAATACAACATTTTAGACAAACTGAAGCTCAACTCTTTCTCTCTTGGCCAACCACCTGATAAGCGCTCAATACTCGGCTTTTTCGCTGGTGGTCGAGCTCATGGAGACATAAGACCATTGCTATTCGAACACTGGGAAAATAAAGACGCTGAAATTTTAGTGTACGAGAAGGTTCCAAAGGAGCTCAACTACAATAAGTTGATGGAACAGAGCAAGTTTTGCTTTTGCCCTAGTGGTTGGGAAGTGGCAAGTCCTAGGATTATCGAATCACTTCAATCGGGATGTGTTCCAGTGATCATTGCGGACAATTACGAATTGCCCTTTAACGATGTGCTCGATTGGTGCAAGTTTTCGCTTTTCATCCCGTCGAGTAGAATACCAGAAATAAAGACCATCTTGAAGGGAGTTTCCGATAAAAAGTACTTGAAGATGCAGCAGAGGGTGATGAAAGTGAGAAGGCATTTTGAGCTCAACCGACCTGCTAAGCCTTTTGACGTGATTCATATGGTGCTTCACTCGGTTTGGCTCAGAAGGCTTAACGTCAAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

397

Amino Acids

46.26

Weight (kDa)

9.08

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 78 - 348 3.6e-56 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1129
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 2 cut(s) 471, 532
AciI CCGC 2 cut(s) 75, 944
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 2 cut(s) 372, 688
AcsI RAATTY 1 cut(s) 795
AcuI CTGAAG 3 cut(s) 84, 627, 686
AfaI GTAC 7 cut(s) 389, 432, 473, 585, 639, 806, 1064
AfeI AGCGCT 1 cut(s) 707
AfiI CCNNNNNNNGG 3 cut(s) 99, 249, 322
AgsI TTSAA 4 cut(s) 616, 917, 1042, 1069
AjiI CACGTC 1 cut(s) 1138
AjnI CCWGG 2 cut(s) 137, 535
AluBI AGCT 5 cut(s) 562, 670, 740, 826, 1111
AluI AGCT 5 cut(s) 562, 670, 740, 826, 1111
Alw21I GWGCWC 6 cut(s) 424, 564, 742, 828, 978, 1113
Alw26I GTCTC 1 cut(s) 741
AlwI GGATC 1 cut(s) 548
Aor51HI AGCGCT 1 cut(s) 707
AoxI GGCC 3 cut(s) 251, 372, 688
ApeKI GCWGC 1 cut(s) 1075
ApoI RAATTY 1 cut(s) 795
ArsI GACNNNNNNTTYG 2 cut(s) 435, 467
Asp700I GAANNNNTTC 1 cut(s) 912
Asp718I GGTACC 1 cut(s) 471
AspA2I CCTAGG 1 cut(s) 896
AspLEI GCGC 1 cut(s) 708
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 397, 1096
AsuII TTCGAA 1 cut(s) 768
AvrII CCTAGG 1 cut(s) 896
BaeGI GKGCMC 1 cut(s) 535
BalI TGGCCA 2 cut(s) 374, 690
BanI GGYRCC 2 cut(s) 471, 532
BanII GRGCYC 4 cut(s) 564, 742, 828, 1113
BarI GAAGNNNNNNTAC 4 cut(s) 342, 374, 377, 409
BauI CACGAG 1 cut(s) 69
Bbv12I GWGCWC 6 cut(s) 424, 564, 742, 828, 978, 1113
BbvI GCAGC 1 cut(s) 1087
BccI CCATC 5 cut(s) 281, 421, 629, 838, 1043
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 2 cut(s) 139, 537
BclI TGATCA 1 cut(s) 936
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 2 cut(s) 873, 897
BfoI RGCGCY 1 cut(s) 709
BfuAI ACCTGC 1 cut(s) 1129
BisI GCNGC 2 cut(s) 75, 1076
BlnI CCTAGG 1 cut(s) 896
BlpI GCTNAGC 1 cut(s) 1125
BlsI GCNGC 2 cut(s) 76, 1077
BmcAI AGTACT 1 cut(s) 1064
Bme1390I CCNGG 3 cut(s) 94, 139, 537
BmgBI CACGTC 1 cut(s) 1138
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 4 cut(s) 473, 499, 534, 816
BmrFI CCNGG 3 cut(s) 94, 139, 537
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 3 cut(s) 98, 424, 1062
BmuI ACTGGG 1 cut(s) 784
BoxI GACNNNNGTC 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 558
Bpu1102I GCTNAGC 1 cut(s) 1125
Bpu14I TTCGAA 1 cut(s) 768
BpuMI CCSGG 1 cut(s) 94
BsaJI CCNNGG 3 cut(s) 137, 138, 896
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 249, 322
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 3 cut(s) 416, 779, 932
Bse3DI GCAATG 3 cut(s) 598, 758, 939
BseBI CCWGG 2 cut(s) 139, 537
BseDI CCNNGG 3 cut(s) 137, 138, 896
BseGI GGATG 4 cut(s) 89, 432, 929, 1002
BseLI CCNNNNNNNGG 3 cut(s) 99, 249, 322
BseMI GCAATG 3 cut(s) 598, 758, 939
BseMII CTCAG 2 cut(s) 549, 1183
BseNI ACTGG 3 cut(s) 416, 779, 932
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 1 cut(s) 1087
BshFI GGCC 3 cut(s) 253, 374, 690
BshNI GGYRCC 2 cut(s) 471, 532
BsiHKAI GWGCWC 6 cut(s) 424, 564, 742, 828, 978, 1113
BsiSI CCGG 2 cut(s) 94, 401
BslI CCNNNNNNNGG 3 cut(s) 99, 249, 322
BsmAI GTCTC 1 cut(s) 741
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 3 cut(s) 253, 374, 690
Bsp119I TTCGAA 1 cut(s) 768
Bsp1286I GDGCHC 7 cut(s) 424, 535, 564, 742, 828, 978, 1113
Bsp143I GATC 2 cut(s) 553, 936
Bsp1720I GCTNAGC 1 cut(s) 1125
BspACI CCGC 2 cut(s) 75, 944
BspANI GGCC 3 cut(s) 253, 374, 690
BspCNI CTCAG 2 cut(s) 550, 1182
BspHI TCATGA 2 cut(s) 334, 523
BspLI GGNNCC 4 cut(s) 473, 499, 534, 816
BspMI ACCTGC 1 cut(s) 1129
BspPI GGATC 1 cut(s) 548
BspT104I TTCGAA 1 cut(s) 768
BspT107I GGYRCC 2 cut(s) 471, 532
BsrDI GCAATG 3 cut(s) 598, 758, 939
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 3 cut(s) 416, 779, 932
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 3 cut(s) 137, 138, 896
BssMI GATC 2 cut(s) 553, 936
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 896
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 139, 537
Bst6I CTCTTC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 861
BstBI TTCGAA 1 cut(s) 768
BstDEI CTNAG 3 cut(s) 558, 1125, 1169
BstEII GGTNACC 1 cut(s) 403
BstF5I GGATG 4 cut(s) 89, 432, 929, 1002
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 1 cut(s) 708
BstKTI GATC 2 cut(s) 556, 939
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 2 cut(s) 553, 936
BstMWI GCNNNNNNNGC 4 cut(s) 74, 861, 1108, 1174
BstNI CCWGG 2 cut(s) 139, 537
BstNSI RCATGY 1 cut(s) 400
BstPAI GACNNNNGTC 1 cut(s) 245
BstPI GGTNACC 1 cut(s) 403
BstSCI CCNGG 3 cut(s) 92, 137, 535
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 1 cut(s) 1087
BsuRI GGCC 3 cut(s) 253, 374, 690
BtrI CACGTC 1 cut(s) 1138
BtsCI GGATG 4 cut(s) 89, 432, 929, 1002
BtsIMutI CAGTG 2 cut(s) 772, 939
BveI ACCTGC 1 cut(s) 1129
CciI TCATGA 2 cut(s) 334, 523
CfoI GCGC 1 cut(s) 708
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 797
Csp6I GTAC 7 cut(s) 388, 431, 472, 584, 638, 805, 1063
CviAII CATG 7 cut(s) 245, 322, 335, 347, 397, 524, 743
CviQI GTAC 7 cut(s) 388, 431, 472, 584, 638, 805, 1063
DdeI CTNAG 3 cut(s) 558, 1125, 1169
DpnI GATC 2 cut(s) 555, 938
DpnII GATC 2 cut(s) 553, 936
EaeI YGGCCR 2 cut(s) 372, 688
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 4 cut(s) 562, 740, 826, 1111
Eco130I CCWWGG 1 cut(s) 896
Eco24I GRGCYC 4 cut(s) 564, 742, 828, 1113
Eco47III AGCGCT 1 cut(s) 707
Eco53kI GAGCTC 4 cut(s) 562, 740, 826, 1111
Eco57I CTGAAG 3 cut(s) 84, 627, 686
Eco91I GGTNACC 1 cut(s) 403
EcoICRI GAGCTC 4 cut(s) 562, 740, 826, 1111
EcoO65I GGTNACC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 137, 535
EcoT14I CCWWGG 1 cut(s) 896
EcoT38I GRGCYC 4 cut(s) 564, 742, 828, 1113
ErhI CCWWGG 1 cut(s) 896
FaeI CATG 7 cut(s) 248, 325, 338, 350, 400, 527, 746
FalI AAGNNNNNCTT 6 cut(s) 216, 248, 848, 880, 1022, 1054
FatI CATG 7 cut(s) 244, 321, 334, 346, 396, 523, 742
FauNDI CATATG 1 cut(s) 1146
FbaI TGATCA 1 cut(s) 936
Fnu4HI GCNGC 2 cut(s) 75, 1076
FokI GGATG 4 cut(s) 76, 439, 936, 989
FriOI GRGCYC 4 cut(s) 564, 742, 828, 1113
Fsp4HI GCNGC 2 cut(s) 75, 1076
FspBI CTAG 2 cut(s) 873, 897
GlaI GCGC 1 cut(s) 707
GluI GCNGC 2 cut(s) 75, 1076
HaeII RGCGCY 1 cut(s) 709
HaeIII GGCC 3 cut(s) 253, 374, 690
HapII CCGG 2 cut(s) 94, 401
HgaI GACGC 1 cut(s) 797
HhaI GCGC 1 cut(s) 708
Hin1II CATG 7 cut(s) 248, 325, 338, 350, 400, 527, 746
Hin6I GCGC 1 cut(s) 706
HinP1I GCGC 1 cut(s) 706
HinfI GANTC 5 cut(s) 125, 178, 612, 908, 1141
HpaII CCGG 2 cut(s) 94, 401
HphI GGTGA 2 cut(s) 397, 1096
Hpy166II GTNNAC 1 cut(s) 805
Hpy188I TCNGA 8 cut(s) 23, 115, 177, 426, 607, 626, 1054, 1172
Hpy188III TCNNGA 6 cut(s) 187, 335, 524, 557, 921, 1039
Hpy8I GTNNAC 1 cut(s) 805
Hpy99I CGWCG 2 cut(s) 296, 1012
HpyCH4IV ACGT 3 cut(s) 450, 1137, 1182
HpyCH4V TGCA 4 cut(s) 264, 591, 987, 1075
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 861, 1108, 1174
HpyF3I CTNAG 3 cut(s) 558, 1125, 1169
HpySE526I ACGT 3 cut(s) 450, 1137, 1182
Hsp92II CATG 7 cut(s) 248, 325, 338, 350, 400, 527, 746
HspAI GCGC 1 cut(s) 706
KpnI GGTACC 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 936
Kzo9I GATC 2 cut(s) 553, 936
LmnI GCTCC 2 cut(s) 497, 823
Lsp1109I GCAGC 1 cut(s) 1087
LweI GCATC 3 cut(s) 98, 424, 1062
MaeI CTAG 2 cut(s) 873, 897
MaeII ACGT 3 cut(s) 450, 1137, 1182
MaeIII GTNAC 3 cut(s) 215, 403, 541
MalI GATC 2 cut(s) 555, 938
MboI GATC 2 cut(s) 553, 936
MboII GAAGA 5 cut(s) 55, 62, 134, 350, 1081
MhlI GDGCHC 7 cut(s) 424, 535, 564, 742, 828, 978, 1113
MlsI TGGCCA 2 cut(s) 374, 690
MluCI AATT 4 cut(s) 103, 795, 949, 956
MluNI TGGCCA 2 cut(s) 374, 690
MlyI GAGTC 2 cut(s) 134, 187
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 6 cut(s) 20, 192, 334, 573, 613, 1074
Mox20I TGGCCA 2 cut(s) 374, 690
MroXI GAANNNNTTC 1 cut(s) 912
MscI TGGCCA 2 cut(s) 374, 690
MseI TTAA 3 cut(s) 204, 966, 1179
MslI CAYNNNNRTG 2 cut(s) 336, 395
Msp20I TGGCCA 2 cut(s) 374, 690
MspI CCGG 2 cut(s) 94, 401
MspR9I CCNGG 3 cut(s) 94, 139, 537
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 2 cut(s) 139, 537
MwoI GCNNNNNNNGC 4 cut(s) 74, 861, 1108, 1174
NciI CCSGG 1 cut(s) 94
NdeI CATATG 1 cut(s) 1146
NdeII GATC 2 cut(s) 553, 936
NlaIII CATG 7 cut(s) 248, 325, 338, 350, 400, 527, 746
NlaIV GGNNCC 4 cut(s) 473, 499, 534, 816
NmeAIII GCCGAG 1 cut(s) 696
NmuCI GTSAC 1 cut(s) 403
NspI RCATGY 1 cut(s) 400
NspV TTCGAA 1 cut(s) 768
PagI TCATGA 2 cut(s) 334, 523
PasI CCCWGGG 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 975
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 912
PfeI GAWTC 3 cut(s) 612, 908, 1141
PfoI TCCNGGA 1 cut(s) 92
PkrI GCNGC 2 cut(s) 76, 1077
PleI GAGTC 2 cut(s) 133, 186
PpsI GAGTC 2 cut(s) 133, 186
PshAI GACNNNNGTC 1 cut(s) 245
Psp124BI GAGCTC 4 cut(s) 564, 742, 828, 1113
Psp6I CCWGG 2 cut(s) 137, 535
PspEI GGTNACC 1 cut(s) 403
PspGI CCWGG 2 cut(s) 137, 535
PspN4I GGNNCC 4 cut(s) 473, 499, 534, 816
PspPI GGNCC 1 cut(s) 251
RsaI GTAC 7 cut(s) 389, 432, 473, 585, 639, 806, 1064
RsaNI GTAC 7 cut(s) 388, 431, 472, 584, 638, 805, 1063
RseI CAYNNNNRTG 2 cut(s) 336, 395
SacI GAGCTC 4 cut(s) 564, 742, 828, 1113
SaqAI TTAA 3 cut(s) 204, 966, 1179
SatI GCNGC 2 cut(s) 75, 1076
Sau3AI GATC 2 cut(s) 553, 936
Sau96I GGNCC 1 cut(s) 251
ScaI AGTACT 1 cut(s) 1064
SchI GAGTC 2 cut(s) 134, 187
ScrFI CCNGG 3 cut(s) 94, 139, 537
SduI GDGCHC 7 cut(s) 424, 535, 564, 742, 828, 978, 1113
SfaNI GCATC 3 cut(s) 98, 424, 1062
SfuI TTCGAA 1 cut(s) 768
SmiMI CAYNNNNRTG 2 cut(s) 336, 395
Sse9I AATT 4 cut(s) 103, 795, 949, 956
SsiI CCGC 2 cut(s) 75, 944
SspMI CTAG 2 cut(s) 873, 897
SstI GAGCTC 4 cut(s) 564, 742, 828, 1113
StyD4I CCNGG 3 cut(s) 92, 137, 535
StyI CCWWGG 1 cut(s) 896
TaiI ACGT 3 cut(s) 453, 1140, 1185
TaqI TCGA 8 cut(s) 186, 276, 291, 736, 768, 906, 978, 1010
TasI AATT 4 cut(s) 103, 795, 949, 956
TatI WGTACW 2 cut(s) 387, 1062
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 3 cut(s) 612, 908, 1141
Tru1I TTAA 3 cut(s) 204, 966, 1179
Tru9I TTAA 3 cut(s) 204, 966, 1179
TscAI CASTG 2 cut(s) 779, 939
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 1 cut(s) 1075
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 6 cut(s) 121, 161, 310, 991, 1103, 1133
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 2 cut(s) 779, 939
XapI RAATTY 1 cut(s) 795
XceI RCATGY 1 cut(s) 400
XmaJI CCTAGG 1 cut(s) 896
XmnI GAANNNNTTC 1 cut(s) 912
XspI CTAG 2 cut(s) 873, 897
ZrmI AGTACT 1 cut(s) 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.