Rw2G002350

Glycosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
1942363 .. 1944197
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002350.1

Sequence Viewer

Length: 1416 bp
ATGACCAGAAGCTTTAAATACCCTGCACTATTTTTGTTAACTACATTATCGATTCTTTTTCTCCTCCTGATATTTAAACCTTTACTGACCAAAAACCATTTCAGTATTCCCTTTGTTTCCACCCTCACTAGTACACCTTTCATCAATCCAGAAAACAGCAACTACACACTACCCCCACCGCAAGTTTCTTTAGATGGGTTTCTCACAAGCTCCATGGATCGAAGGAGTAGGTGCGACGTTAATGGTACCAAAAGAATTGAAGATGGTTTAGCTGAAGCTCGAGCTTCAATTCTCGATGCAATTCGGTTTGAAGACTATACATCAGAGAAAGAAGAGACTTTTATCCCAAGAGGAAGCATTTACAAAAACCCTTATGCATTTCACCAGAGCCACATAGAGATGATGAAGAGGTTTAAGGTGTGGAGCTACAAGGAAGGAGAACATCCCTTAGTGCATTTGGGTCCGATGAATAGGATATATGGCATTGAAGGACAATTCATAGATGAAATAGTGAGGGAGGAGAGCCCATTCAGGGCTACACATCCTGATGAGGCACACATTTTTTTCCTTCCCTTTAGTGTAGCCAACACTGTGCACTATGTGTACCGGCCTGTCATCCGAAAAGAGAACTACCTCCGTGATCGCCTACAACGGATTGCCATGGACTACATAGGTGTTGTGGCACATAAGTACCCCTACTGGAATAGAAGCAATGGTGCTGACCATTTTATGGCTTCATGTCATGACTGGGGACCGCAGATTTCACTAGGTCAATCGGAACTCCTGAAGAACTTCATTAGAGTACTTTGCAATGCCAACACCTCAGAAGGGTTTGAACCTAAAAGAGACGTTTCACTACCTGAAGTTTTTGTACCTTCTGGAAAGCTTGGCCGGCCCAATTTTGGTCAAGCCCCACACAATCGCCGGATTCTGGCCTTCTTTGTCGGTGGTGTTCATAGACCGATTCGACCTATCTTGCTCCATCATTGGAAGGACAAAGATAACGAAGTTCAAGTCCACGAGACGCTTCCCGAAGGCATGAACTACACCGCATTAATGGGACAGAGCAAGTTTTGCTTGTGCCCTAGTGGTTTTGAAGTGGCAAGTGCAAGAGTTGTGGAGGCAATTTATGCAGGGTGTGTTCCAGTGATAATATCTGACCACTACACACTACCCTTTAGCGATGTCCTCGACTGGAGCCAATTTTCAATACAAATTACCGTCGCTAAAATACCAGAAATCAAGACCATCTTACAAGCGATTCCAGATGAGGAATACCAAAAGATGCAGAGAAGGGTTTTAAAAGTTCAGAGGCATTTTTTACTCAACAGGCCGGCTAAGCCATTTGATGTGATTCACATGGTACTTCACTCAGTGTGGCTGAGACGAATTGACTTTAAGATTGGCTCTACTTGA

Protein Analysis

471

Amino Acids

54.34

Weight (kDa)

8.84

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 120 - 421 3.3e-61 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 730
AciI CCGC 3 cut(s) 179, 755, 1050
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 889
AcuI CTGAAG 3 cut(s) 294, 806, 882
AdeI CACNNNGTG 2 cut(s) 601, 1375
AfaI GTAC 7 cut(s) 133, 247, 605, 692, 804, 873, 1365
AfiI CCNNNNNNNGG 5 cut(s) 532, 730, 828, 902, 931
AgsI TTSAA 8 cut(s) 260, 288, 311, 488, 836, 1013, 1097, 1209
AhlI ACTAGT 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 7 cut(s) 12, 210, 272, 278, 284, 426, 886
AluI AGCT 7 cut(s) 12, 210, 272, 278, 284, 426, 886
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 4 cut(s) 329, 840, 1016, 1378
Alw44I GTGCAC 1 cut(s) 593
AlwI GGATC 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 5 cut(s) 608, 889, 893, 933, 1331
ApaLI GTGCAC 1 cut(s) 593
ArsI GACNNNNNNTTYG 2 cut(s) 999, 1031
AseI ATTAAT 1 cut(s) 1055
Asp700I GAANNNNTTC 1 cut(s) 791
Asp718I GGTACC 1 cut(s) 245
AspS9I GGNCC 3 cut(s) 461, 752, 894
AsuHPI GGTGA 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 2 cut(s) 461, 752
BaeGI GKGCMC 2 cut(s) 597, 1085
BaeI ACNNNNGTAYC 2 cut(s) 674, 707
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 527
BarI GAAGNNNNNNTAC 2 cut(s) 855, 887
BauI CACGAG 1 cut(s) 1019
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 597
BccI CCATC 4 cut(s) 188, 257, 990, 1256
BcoDI GTCTC 4 cut(s) 329, 840, 1016, 1378
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 3 cut(s) 129, 767, 1086
BlpI GCTNAGC 1 cut(s) 1338
BmcAI AGTACT 1 cut(s) 804
Bme18I GGWCC 2 cut(s) 461, 752
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 3 cut(s) 461, 752, 894
BmiI GGNNCC 4 cut(s) 247, 462, 753, 1199
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 2 cut(s) 286, 1275
BmuI ACTGGG 1 cut(s) 757
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 1216
Bpu1102I GCTNAGC 1 cut(s) 1338
Bsa29I ATCGAT 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 213, 660
Bsc4I CCNNNNNNNGG 5 cut(s) 532, 730, 828, 902, 931
Bse118I RCCGGY 3 cut(s) 606, 891, 1333
Bse1I ACTGG 4 cut(s) 704, 752, 1145, 1199
Bse3DI GCAATG 2 cut(s) 718, 817
BseCI ATCGAT 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 213, 660
BseGI GGATG 3 cut(s) 442, 541, 615
BseLI CCNNNNNNNGG 5 cut(s) 532, 730, 828, 902, 931
BseMI GCAATG 2 cut(s) 718, 817
BseMII CTCAG 3 cut(s) 837, 1373, 1386
BseNI ACTGG 4 cut(s) 704, 752, 1145, 1199
BseRI GAGGAG 2 cut(s) 53, 533
BseSI GKGCMC 2 cut(s) 597, 1085
BsgI GTGCAG 1 cut(s) 9
BshFI GGCC 5 cut(s) 610, 891, 895, 935, 1333
BshNI GGYRCC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 597
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 4 cut(s) 607, 892, 925, 1334
BslFI GGGAC 2 cut(s) 765, 1074
BslI CCNNNNNNNGG 5 cut(s) 532, 730, 828, 902, 931
BsmAI GTCTC 4 cut(s) 329, 840, 1016, 1378
BsmBI CGTCTC 3 cut(s) 840, 1016, 1378
BsmFI GGGAC 2 cut(s) 765, 1074
BsnI GGCC 5 cut(s) 610, 891, 895, 935, 1333
BsoBI CYCGRG 1 cut(s) 279
Bsp1286I GDGCHC 3 cut(s) 527, 597, 1085
Bsp143I GATC 2 cut(s) 217, 640
Bsp1720I GCTNAGC 1 cut(s) 1338
Bsp19I CCATGG 2 cut(s) 213, 660
BspACI CCGC 3 cut(s) 179, 755, 1050
BspANI GGCC 5 cut(s) 610, 891, 895, 935, 1333
BspCNI CTCAG 3 cut(s) 836, 1374, 1385
BspDI ATCGAT 1 cut(s) 50
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 4 cut(s) 247, 462, 753, 1199
BspPI GGATC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 718, 817
BsrFI RCCGGY 3 cut(s) 606, 891, 1333
BsrI ACTGG 4 cut(s) 704, 752, 1145, 1199
BssAI RCCGGY 3 cut(s) 606, 891, 1333
BssECI CCNNGG 2 cut(s) 213, 660
BssMI GATC 2 cut(s) 217, 640
BssSI CACGAG 1 cut(s) 1019
BssT1I CCWWGG 2 cut(s) 213, 660
Bst2BI CACGAG 1 cut(s) 1019
Bst4CI ACNGT 2 cut(s) 592, 1222
Bst6I CTCTTC 2 cut(s) 327, 401
BstAPI GCANNNNNTGC 2 cut(s) 1074, 1130
BstC8I GCNNGC 2 cut(s) 893, 1335
BstDEI CTNAG 5 cut(s) 448, 823, 1338, 1372, 1382
BstDSI CCRYGG 2 cut(s) 213, 660
BstF5I GGATG 3 cut(s) 442, 541, 615
BstKTI GATC 2 cut(s) 220, 643
BstMAI GTCTC 4 cut(s) 329, 840, 1016, 1378
BstMBI GATC 2 cut(s) 217, 640
BstMWI GCNNNNNNNGC 4 cut(s) 892, 1074, 1130, 1339
BstSLI GKGCMC 2 cut(s) 597, 1085
BstV2I GAAGAC 1 cut(s) 318
Bsu15I ATCGAT 1 cut(s) 50
BsuRI GGCC 5 cut(s) 610, 891, 895, 935, 1333
BsuTUI ATCGAT 1 cut(s) 50
BtgI CCRYGG 2 cut(s) 213, 660
BtgZI GCGATG 1 cut(s) 1197
BtsCI GGATG 3 cut(s) 442, 541, 615
BtsIMutI CAGTG 3 cut(s) 588, 1152, 1380
Cac8I GCNNGC 2 cut(s) 893, 1335
CciI TCATGA 1 cut(s) 742
Cfr10I RCCGGY 3 cut(s) 606, 891, 1333
Cfr13I GGNCC 3 cut(s) 461, 752, 894
ClaI ATCGAT 1 cut(s) 50
CseI GACGC 1 cut(s) 1033
Csp6I GTAC 7 cut(s) 132, 246, 604, 691, 803, 872, 1364
CspCI CAANNNNNGTGG 2 cut(s) 1098, 1133
CviAII CATG 6 cut(s) 214, 661, 738, 743, 1039, 1360
CviQI GTAC 7 cut(s) 132, 246, 604, 691, 803, 872, 1364
DdeI CTNAG 5 cut(s) 448, 823, 1338, 1372, 1382
DpnI GATC 2 cut(s) 219, 642
DpnII GATC 2 cut(s) 217, 640
DraI TTTAAA 3 cut(s) 16, 76, 1302
DraIII CACNNNGTG 2 cut(s) 601, 1375
EaeI YGGCCR 1 cut(s) 889
Eam1104I CTCTTC 2 cut(s) 327, 401
EarI CTCTTC 2 cut(s) 327, 401
Eco130I CCWWGG 2 cut(s) 213, 660
Eco24I GRGCYC 1 cut(s) 527
Eco47I GGWCC 2 cut(s) 461, 752
Eco57I CTGAAG 3 cut(s) 294, 806, 882
Eco88I CYCGRG 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 213, 660
EcoT22I ATGCAT 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 527
ErhI CCWWGG 2 cut(s) 213, 660
Esp3I CGTCTC 3 cut(s) 840, 1016, 1378
FaeI CATG 6 cut(s) 217, 664, 741, 746, 1042, 1363
FalI AAGNNNNNCTT 4 cut(s) 1061, 1093, 1235, 1267
FaqI GGGAC 2 cut(s) 765, 1074
FatI CATG 6 cut(s) 213, 660, 737, 742, 1038, 1359
FokI GGATG 3 cut(s) 429, 528, 602
FriOI GRGCYC 1 cut(s) 527
FseI GGCCGGCC 1 cut(s) 895
FspBI CTAG 3 cut(s) 129, 767, 1086
GsuI CTGGAG 1 cut(s) 1216
HaeIII GGCC 5 cut(s) 610, 891, 895, 935, 1333
HapII CCGG 4 cut(s) 607, 892, 925, 1334
HgaI GACGC 1 cut(s) 1033
Hin1II CATG 6 cut(s) 217, 664, 741, 746, 1042, 1363
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 2 cut(s) 10, 884
HinfI GANTC 5 cut(s) 52, 928, 964, 1261, 1354
HpaI GTTAAC 1 cut(s) 39
HpaII CCGG 4 cut(s) 607, 892, 925, 1334
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 5 cut(s) 39, 134, 595, 604, 1018
Hpy188I TCNGA 7 cut(s) 325, 465, 620, 778, 826, 1159, 1311
Hpy8I GTNNAC 5 cut(s) 39, 134, 595, 604, 1018
Hpy99I CGWCG 2 cut(s) 239, 1226
HpyCH4III ACNGT 2 cut(s) 592, 1222
HpyCH4IV ACGT 2 cut(s) 237, 849
HpyCH4V TGCA 9 cut(s) 26, 299, 377, 454, 595, 810, 1109, 1133, 1288
HpyF10VI GCNNNNNNNGC 4 cut(s) 892, 1074, 1130, 1339
HpyF3I CTNAG 5 cut(s) 448, 823, 1338, 1372, 1382
HpySE526I ACGT 2 cut(s) 237, 849
Hsp92II CATG 6 cut(s) 217, 664, 741, 746, 1042, 1363
KpnI GGTACC 1 cut(s) 249
KroI GCCGGC 2 cut(s) 891, 1333
KroNI GCCGGC 2 cut(s) 893, 1335
KspAI GTTAAC 1 cut(s) 39
Kzo9I GATC 2 cut(s) 217, 640
LmnI GCTCC 4 cut(s) 215, 423, 984, 1197
LweI GCATC 2 cut(s) 286, 1275
MaeI CTAG 3 cut(s) 129, 767, 1086
MaeII ACGT 2 cut(s) 237, 849
MalI GATC 2 cut(s) 219, 642
MboI GATC 2 cut(s) 217, 640
MboII GAAGA 5 cut(s) 272, 323, 344, 418, 799
MhlI GDGCHC 3 cut(s) 527, 597, 1085
MluCI AATT 9 cut(s) 255, 288, 300, 494, 898, 1125, 1202, 1215, 1389
Mph1103I ATGCAT 1 cut(s) 379
MroNI GCCGGC 2 cut(s) 891, 1333
MroXI GAANNNNTTC 1 cut(s) 791
MseI TTAA 8 cut(s) 15, 38, 75, 240, 414, 1055, 1301, 1398
MslI CAYNNNNRTG 2 cut(s) 398, 546
MspI CCGG 4 cut(s) 607, 892, 925, 1334
MwoI GCNNNNNNNGC 4 cut(s) 892, 1074, 1130, 1339
NaeI GCCGGC 2 cut(s) 893, 1335
NcoI CCATGG 2 cut(s) 213, 660
NdeII GATC 2 cut(s) 217, 640
NgoMIV GCCGGC 2 cut(s) 891, 1333
NlaIII CATG 6 cut(s) 217, 664, 741, 746, 1042, 1363
NlaIV GGNNCC 4 cut(s) 247, 462, 753, 1199
NsiI ATGCAT 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 279
PagI TCATGA 1 cut(s) 742
PdiI GCCGGC 2 cut(s) 893, 1335
PdmI GAANNNNTTC 1 cut(s) 791
PfeI GAWTC 5 cut(s) 52, 928, 964, 1261, 1354
PflMI CCANNNNNTGG 1 cut(s) 730
PshBI ATTAAT 1 cut(s) 1055
PspN4I GGNNCC 4 cut(s) 247, 462, 753, 1199
PspPI GGNCC 3 cut(s) 461, 752, 894
PspXI VCTCGAGB 1 cut(s) 279
RigI GGCCGGCC 1 cut(s) 895
RsaI GTAC 7 cut(s) 133, 247, 605, 692, 804, 873, 1365
RsaNI GTAC 7 cut(s) 132, 246, 604, 691, 803, 872, 1364
RseI CAYNNNNRTG 2 cut(s) 398, 546
SaqAI TTAA 8 cut(s) 15, 38, 75, 240, 414, 1055, 1301, 1398
Sau3AI GATC 2 cut(s) 217, 640
Sau96I GGNCC 3 cut(s) 461, 752, 894
ScaI AGTACT 1 cut(s) 804
SduI GDGCHC 3 cut(s) 527, 597, 1085
SfaNI GCATC 2 cut(s) 286, 1275
Sfr274I CTCGAG 1 cut(s) 279
SinI GGWCC 2 cut(s) 461, 752
SlaI CTCGAG 1 cut(s) 279
SmiMI CAYNNNNRTG 2 cut(s) 398, 546
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 9 cut(s) 255, 288, 300, 494, 898, 1125, 1202, 1215, 1389
SsiI CCGC 3 cut(s) 179, 755, 1050
SspMI CTAG 3 cut(s) 129, 767, 1086
StyI CCWWGG 2 cut(s) 213, 660
TaaI ACNGT 2 cut(s) 592, 1222
TaiI ACGT 2 cut(s) 240, 852
TaqI TCGA 6 cut(s) 50, 220, 280, 294, 967, 1191
TaqII GACCGA 1 cut(s) 976
TasI AATT 9 cut(s) 255, 288, 300, 494, 898, 1125, 1202, 1215, 1389
TatI WGTACW 2 cut(s) 131, 802
TfiI GAWTC 5 cut(s) 52, 928, 964, 1261, 1354
Tru1I TTAA 8 cut(s) 15, 38, 75, 240, 414, 1055, 1301, 1398
Tru9I TTAA 8 cut(s) 15, 38, 75, 240, 414, 1055, 1301, 1398
TscAI CASTG 3 cut(s) 595, 1152, 1380
TspDTI ATGAA 9 cut(s) 130, 419, 482, 487, 519, 726, 784, 944, 1055
TspGWI ACGGA 2 cut(s) 626, 667
TspRI CASTG 3 cut(s) 595, 1152, 1380
Van91I CCANNNNNTGG 1 cut(s) 730
VneI GTGCAC 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 461, 752
VspI ATTAAT 1 cut(s) 1055
XhoI CTCGAG 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 791
XspI CTAG 3 cut(s) 129, 767, 1086
ZrmI AGTACT 1 cut(s) 804
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.