Rh3CG007800

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000987
Physical Location & Seq
Reverse (-)
533514 .. 537056
3543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG007800.1

Sequence Viewer

Length: 1179 bp
ATGGAAAAAAGCAATACGAGCAAGATTGAGGAACAATTGGCCAGAGCAAGAGCAGCTATCCACAAAGCAGTTCTTACAAAGAACTATACATCTGATAGACAAGAGATTTACATCCCCAGAGGAAGTGTGTACAGAAATCCCTATGCATTTCATCAGAGTCACATAGAGATGGTAAAAAGATTCAAGATATGGGCATACAAGGAAGGGGAGATACCCATGTTCCATAATGGACCAATGTCATACATCTACTCCATAGAAGGGCAGTTCATGGATGAGCTGGATAGTAGTGGGAAAAGTCCATTTCTGGCTCGCCATCTTCATGAGGCACATTCATTCTTCGTACCAGTAAGTGTGAAAAGGATTGCTGATTTCTTGTATGATCGGCCTAAACCTCACACTTTTCACGGTCGCTTGGTTCGTATCGTCACTGACTATATCAATGTGGTAGCTCAAAAATATCCCTACTGGAATAGGAGCGAGGGAGCTGACCATTTTATGGTCTCTTGTCATGATTGGGCACCAGAAATAATAAATGATGATCTTAAGTTCTACAAGAATTTCATAAGAGTACTTTGCAATGCTAACATATCCGAAGGATTCCAGCCTGGGAGAGACGTCTCGTTGCCAGAATATAACTTGGCCAGTGGCACTCTTGGTCCATCACGCCTTGACTCACACCCTGATGAGCGTCCTATCCTGGCCTTCTTTGCGGGCGGTGCTCATGGTGACATAAGGAAGTTTTTATTTGAGCATTGGAGGGACAAAGATGAGGAAATCCAAGTCCATGAGTATCTTCCAAAGGGTCAAAATTATCACCAAATAATGGGACAAACAAAGTTTTGCTTGTGTCCAAGTGGGACTGAAGTTGCTAGTCCTAGAGTCGTTGAAGCAATGTATGCAGGATGTGTTCCGGTGCTTATTTCTGATTATTATGCATTACCCTTTGGCGATGTTCTTGATTGGCGCAAGTTTACAATAGAAATTCCACCAAAGAGAATACCAGAAATTAAGACGATATTGAAAGCTGTTTCGCATGCAGAATACTTGAAATTGCAGAAGAGGGTGATGCAAGTGAGACGGCATTTTGAGCTGAACCGGCCTGCTAAGCCATTTGATGTGTTTCACATGGTGCTTCACTCAATTTGGCTGAGGAGGCTAAACATTAGACTACCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

392

Amino Acids

45.72

Weight (kDa)

8.86

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 43 - 342 1.1e-58 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 618
AccB1I GGYRCC 1 cut(s) 517
AccB7I CCANNNNNTGG 2 cut(s) 496, 823
AciI CCGC 2 cut(s) 710, 714
AcoI YGGCCR 2 cut(s) 39, 639
AcsI RAATTY 2 cut(s) 556, 981
AcuI CTGAAG 1 cut(s) 882
AcyI GRCGYC 1 cut(s) 615
AdeI CACNNNGTG 1 cut(s) 1129
AfaI GTAC 3 cut(s) 131, 342, 570
AfiI CCNNNNNNNGG 3 cut(s) 258, 496, 823
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 4 cut(s) 184, 887, 1021, 1048
AjnI CCWGG 2 cut(s) 604, 696
AluBI AGCT 6 cut(s) 56, 277, 449, 485, 1025, 1090
AluI AGCT 6 cut(s) 56, 277, 449, 485, 1025, 1090
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 4 cut(s) 505, 606, 622, 1069
AoxI GGCC 5 cut(s) 39, 383, 639, 699, 1097
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 2 cut(s) 556, 981
AspLEI GCGC 1 cut(s) 966
AspS9I GGNCC 2 cut(s) 230, 656
AsuHPI GGTGA 3 cut(s) 737, 806, 1075
AvaII GGWCC 2 cut(s) 230, 656
BaeGI GKGCMC 1 cut(s) 520
BaeI ACNNNNGTAYC 2 cut(s) 203, 236
BalI TGGCCA 2 cut(s) 41, 641
BanI GGYRCC 1 cut(s) 517
BarI GAAGNNNNNNTAC 2 cut(s) 195, 227
Bbv12I GWGCWC 1 cut(s) 721
BbvCI CCTCAGC 1 cut(s) 1148
BbvI GCAGC 1 cut(s) 65
BccI CCATC 3 cut(s) 163, 321, 667
BceAI ACGGC 1 cut(s) 1094
BciT130I CCWGG 2 cut(s) 606, 698
BcoDI GTCTC 4 cut(s) 505, 606, 622, 1069
BfaI CTAG 2 cut(s) 870, 876
BfrI CTTAAG 1 cut(s) 542
BisI GCNGC 1 cut(s) 54
BlpI GCTNAGC 1 cut(s) 1104
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 570
Bme1390I CCNGG 2 cut(s) 606, 698
Bme18I GGWCC 2 cut(s) 230, 656
BmgT120I GGNCC 2 cut(s) 230, 656
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 2 cut(s) 606, 698
BmsI GCATC 1 cut(s) 1056
BoxI GACNNNNGTC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 1148
Bpu1102I GCTNAGC 1 cut(s) 1104
BsaBI GATNNNNATC 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 605
BsaWI WCCGGW 1 cut(s) 910
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 496, 823
Bse118I RCCGGY 1 cut(s) 1095
Bse1I ACTGG 3 cut(s) 344, 470, 642
Bse3DI GCAATG 2 cut(s) 583, 897
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 2 cut(s) 606, 698
BseDI CCNNGG 1 cut(s) 605
BseGI GGATG 3 cut(s) 111, 277, 908
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 3 cut(s) 258, 496, 823
BseMI GCAATG 2 cut(s) 583, 897
BseMII CTCAG 1 cut(s) 1139
BseNI ACTGG 3 cut(s) 344, 470, 642
BseRI GAGGAG 1 cut(s) 1165
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 5 cut(s) 41, 385, 641, 701, 1099
BshNI GGYRCC 1 cut(s) 517
BsiEI CGRYCG 1 cut(s) 409
BsiHKAI GWGCWC 1 cut(s) 721
BsiSI CCGG 2 cut(s) 911, 1096
BslFI GGGAC 3 cut(s) 773, 840, 871
BslI CCNNNNNNNGG 3 cut(s) 258, 496, 823
BsmAI GTCTC 4 cut(s) 505, 606, 622, 1069
BsmBI CGTCTC 3 cut(s) 606, 622, 1069
BsmFI GGGAC 3 cut(s) 773, 840, 871
BsnI GGCC 5 cut(s) 41, 385, 641, 701, 1099
Bso31I GGTCTC 1 cut(s) 505
Bsp1286I GDGCHC 2 cut(s) 520, 721
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 2 cut(s) 379, 538
Bsp1720I GCTNAGC 1 cut(s) 1104
BspACI CCGC 2 cut(s) 710, 714
BspANI GGCC 5 cut(s) 41, 385, 641, 701, 1099
BspCNI CTCAG 1 cut(s) 1140
BspHI TCATGA 2 cut(s) 319, 508
BspLI GGNNCC 1 cut(s) 519
BspT107I GGYRCC 1 cut(s) 517
BspTI CTTAAG 1 cut(s) 542
BspTNI GGTCTC 1 cut(s) 505
BsrDI GCAATG 2 cut(s) 583, 897
BsrFI RCCGGY 1 cut(s) 1095
BsrGI TGTACA 1 cut(s) 129
BsrI ACTGG 3 cut(s) 344, 470, 642
BssAI RCCGGY 1 cut(s) 1095
BssECI CCNNGG 1 cut(s) 605
BssMI GATC 2 cut(s) 379, 538
BssNI GRCGYC 1 cut(s) 615
Bst2UI CCWGG 2 cut(s) 606, 698
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 1052
BstACI GRCGYC 1 cut(s) 615
BstAFI CTTAAG 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 896
BstAUI TGTACA 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 310, 712, 1035, 1101
BstDEI CTNAG 2 cut(s) 1104, 1148
BstF5I GGATG 3 cut(s) 111, 277, 908
BstHHI GCGC 1 cut(s) 966
BstKTI GATC 2 cut(s) 382, 541
BstMAI GTCTC 4 cut(s) 505, 606, 622, 1069
BstMBI GATC 2 cut(s) 379, 538
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 9 cut(s) 18, 53, 707, 716, 896, 1087, 1096, 1105, 1153
BstNI CCWGG 2 cut(s) 606, 698
BstNSI RCATGY 1 cut(s) 1037
BstPAI GACNNNNGTC 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 604, 696
BstSLI GKGCMC 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 65
BsuRI GGCC 5 cut(s) 41, 385, 641, 701, 1099
BtgZI GCGATG 1 cut(s) 963
BtsCI GGATG 3 cut(s) 111, 277, 908
BtsIMutI CAGTG 2 cut(s) 426, 649
Cac8I GCNNGC 4 cut(s) 310, 712, 1035, 1101
CciI TCATGA 2 cut(s) 319, 508
CfoI GCGC 1 cut(s) 966
Cfr10I RCCGGY 1 cut(s) 1095
Cfr13I GGNCC 2 cut(s) 230, 656
CseI GACGC 1 cut(s) 677
Csp6I GTAC 3 cut(s) 130, 341, 569
CviAII CATG 8 cut(s) 217, 268, 320, 509, 722, 785, 1034, 1126
CviQI GTAC 3 cut(s) 130, 341, 569
DdeI CTNAG 2 cut(s) 1104, 1148
DpnI GATC 2 cut(s) 381, 540
DpnII GATC 2 cut(s) 379, 538
DraIII CACNNNGTG 1 cut(s) 1129
EaeI YGGCCR 2 cut(s) 39, 639
Eam1104I CTCTTC 1 cut(s) 1052
EarI CTCTTC 1 cut(s) 1052
Eco31I GGTCTC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 230, 656
Eco57I CTGAAG 1 cut(s) 882
EcoRII CCWGG 2 cut(s) 604, 696
EcoT22I ATGCAT 2 cut(s) 148, 937
Esp3I CGTCTC 3 cut(s) 606, 622, 1069
FaeI CATG 8 cut(s) 220, 271, 323, 512, 725, 788, 1037, 1129
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 827, 859
FaqI GGGAC 3 cut(s) 773, 840, 871
FatI CATG 8 cut(s) 216, 267, 319, 508, 721, 784, 1033, 1125
FauI CCCGC 1 cut(s) 703
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 3 cut(s) 98, 284, 915
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 870, 876
GlaI GCGC 1 cut(s) 965
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 5 cut(s) 41, 385, 641, 701, 1099
HapII CCGG 2 cut(s) 911, 1096
HgaI GACGC 1 cut(s) 677
HhaI GCGC 1 cut(s) 966
Hin1I GRCGYC 1 cut(s) 615
Hin1II CATG 8 cut(s) 220, 271, 323, 512, 725, 788, 1037, 1129
Hin6I GCGC 1 cut(s) 964
HinP1I GCGC 1 cut(s) 964
HinfI GANTC 5 cut(s) 157, 180, 597, 671, 879
HpaII CCGG 2 cut(s) 911, 1096
HphI GGTGA 3 cut(s) 737, 806, 1075
Hpy166II GTNNAC 2 cut(s) 130, 972
Hpy188I TCNGA 4 cut(s) 94, 156, 592, 925
Hpy188III TCNNGA 4 cut(s) 184, 320, 509, 956
Hpy8I GTNNAC 2 cut(s) 130, 972
HpyAV CCTTC 4 cut(s) 197, 251, 587, 712
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 7 cut(s) 146, 576, 899, 935, 1037, 1054, 1069
HpyF10VI GCNNNNNNNGC 9 cut(s) 18, 53, 707, 716, 896, 1087, 1096, 1105, 1153
HpyF3I CTNAG 2 cut(s) 1104, 1148
HpySE526I ACGT 1 cut(s) 615
Hsp92I GRCGYC 1 cut(s) 615
Hsp92II CATG 8 cut(s) 220, 271, 323, 512, 725, 788, 1037, 1129
HspAI GCGC 1 cut(s) 964
Kzo9I GATC 2 cut(s) 379, 538
LmnI GCTCC 2 cut(s) 474, 482
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 1056
MaeI CTAG 2 cut(s) 870, 876
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 3 cut(s) 158, 424, 725
MalI GATC 2 cut(s) 381, 540
MboI GATC 2 cut(s) 379, 538
MboII GAAGA 4 cut(s) 308, 328, 785, 1069
MfeI CAATTG 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 520, 721
MlsI TGGCCA 2 cut(s) 41, 641
MluCI AATT 7 cut(s) 35, 556, 808, 981, 1005, 1049, 1140
MluNI TGGCCA 2 cut(s) 41, 641
MlyI GAGTC 3 cut(s) 166, 665, 888
Mox20I TGGCCA 2 cut(s) 41, 641
Mph1103I ATGCAT 2 cut(s) 148, 937
MscI TGGCCA 2 cut(s) 41, 641
MseI TTAA 3 cut(s) 543, 1008, 1177
MslI CAYNNNNRTG 3 cut(s) 167, 318, 681
Msp20I TGGCCA 2 cut(s) 41, 641
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 2 cut(s) 911, 1096
MspR9I CCNGG 2 cut(s) 606, 698
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 2 cut(s) 606, 698
MwoI GCNNNNNNNGC 9 cut(s) 18, 53, 707, 716, 896, 1087, 1096, 1105, 1153
NdeII GATC 2 cut(s) 379, 538
NlaIII CATG 8 cut(s) 220, 271, 323, 512, 725, 788, 1037, 1129
NlaIV GGNNCC 1 cut(s) 519
NmuCI GTSAC 3 cut(s) 158, 424, 725
NsiI ATGCAT 2 cut(s) 148, 937
NspI RCATGY 1 cut(s) 1037
PaeI GCATGC 1 cut(s) 1037
PagI TCATGA 2 cut(s) 319, 508
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PfeI GAWTC 2 cut(s) 180, 597
PflMI CCANNNNNTGG 2 cut(s) 496, 823
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 3 cut(s) 165, 665, 887
PpsI GAGTC 3 cut(s) 165, 665, 887
PshAI GACNNNNGTC 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 604, 696
PspGI CCWGG 2 cut(s) 604, 696
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 2 cut(s) 230, 656
RsaI GTAC 3 cut(s) 131, 342, 570
RsaNI GTAC 3 cut(s) 130, 341, 569
RseI CAYNNNNRTG 3 cut(s) 167, 318, 681
SaqAI TTAA 3 cut(s) 543, 1008, 1177
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 379, 538
Sau96I GGNCC 2 cut(s) 230, 656
ScaI AGTACT 1 cut(s) 570
SchI GAGTC 3 cut(s) 166, 665, 888
ScrFI CCNGG 2 cut(s) 606, 698
SduI GDGCHC 2 cut(s) 520, 721
SetI ASST 8 cut(s) 58, 279, 394, 451, 487, 618, 1027, 1092
SfaNI GCATC 1 cut(s) 1056
SinI GGWCC 2 cut(s) 230, 656
SmiMI CAYNNNNRTG 3 cut(s) 167, 318, 681
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SphI GCATGC 1 cut(s) 1037
Sse9I AATT 7 cut(s) 35, 556, 808, 981, 1005, 1049, 1140
SsiI CCGC 2 cut(s) 710, 714
SspMI CTAG 2 cut(s) 870, 876
StyD4I CCNGG 2 cut(s) 604, 696
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 1 cut(s) 618
TasI AATT 7 cut(s) 35, 556, 808, 981, 1005, 1049, 1140
TatI WGTACW 2 cut(s) 129, 568
TfiI GAWTC 2 cut(s) 180, 597
Tru1I TTAA 3 cut(s) 543, 1008, 1177
Tru9I TTAA 3 cut(s) 543, 1008, 1177
TscAI CASTG 2 cut(s) 433, 649
TseFI GTSAC 3 cut(s) 158, 424, 725
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 3 cut(s) 158, 424, 725
TspDTI ATGAA 5 cut(s) 140, 256, 308, 321, 550
TspRI CASTG 2 cut(s) 433, 649
Van91I CCANNNNNTGG 2 cut(s) 496, 823
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 2 cut(s) 230, 656
XapI RAATTY 2 cut(s) 556, 981
XceI RCATGY 1 cut(s) 1037
XspI CTAG 2 cut(s) 870, 876
ZraI GACGTC 1 cut(s) 616
ZrmI AGTACT 1 cut(s) 570
Zsp2I ATGCAT 2 cut(s) 148, 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.